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qPCR
•
reset
0
votes
0
replies
628
views
nondetects and technical replicates
qPCR
nondetects
2.2 years ago
Ed Siefker
▴ 230
0
votes
0
replies
1.1k
views
How to perform a cluster analysis in RT-qPCR or HT-qPCR results?
cluster
qpcr
qpcrNorm
clusterProfiler
HTqPCR
3.3 years ago
Javier
• 0
0
votes
2
replies
2.3k
views
log2FoldChange calculation in DESeq2
DESeq2
RNASeq
qPCR
qPCRData
4.4 years ago
Claire
• 0
3
votes
0
replies
866
views
Creating qPCRset for nondetects anlaysis from QuantStudio data
nondetects
qPCR
qPCRData
4.7 years ago
jhackett
▴ 30
3
votes
4
replies
5.0k
views
Using limma for the analysis of qPCR data
NormqPCR
EasyqpcR
qPCR
HTqPCR
limma
updated 4.3 years ago by
Ming
▴ 380 • written 5.0 years ago by
enricoferrero
▴ 680
0
votes
1
reply
1.1k
views
Most liked/utilized qPCR analysis package
qPCR
updated 7.7 years ago by
Gordon Smyth
53k • written 7.7 years ago by
rbronste
▴ 60
0
votes
0
replies
1.2k
views
NormqPCR Package query
SelectHK
qpcr
Genorm
7.8 years ago
jingchakvk
• 0
0
votes
0
replies
1.2k
views
HTqPCR trouble with changeCtLayout
htqpcr
qPCR
8.0 years ago
samantha_jeschonek
• 0
1
vote
7
replies
2.4k
views
EDGE: Persistent lrt() and odp() command pi0est() error due to low p values
edge
qpcr
qvalue
8.9 years ago • updated 8.0 years ago
joe.d.moore.ii
• 0
1
vote
4
replies
2.4k
views
ddCT Package for StepOnePlus qPCR output
qPCR
ddCt
geneexpression
updated 8.5 years ago by
Zhang, Jitao David
▴ 120 • written 8.5 years ago by
rbronste
▴ 60
0
votes
0
replies
1.2k
views
Batch Correction in HTqPCR?
qPCR
htqpcr
9.0 years ago
bradley
• 0
1
vote
0
replies
2.3k
views
DE analysis of PCR array [was: dataset dim for siggenes]
qPCR
Normalization
multtest
limma
siggenes
11.4 years ago • updated 9.1 years ago
Gordon Smyth
53k
0
votes
0
replies
1.5k
views
Replicating read.qPCR - "attribute on NULL"
qpcr
R
9.4 years ago
t.f.jones
• 0
0
votes
0
replies
1.2k
views
select samples for qPCR
qpcr
sample
10.4 years ago
Frederico Moraes Ferreira
▴ 100
1
vote
3
replies
3.1k
views
ddCt calculation using bioconductor package
ddct
qPCR
updated 4.7 years ago by
Pengcheng Yang
▴ 60 • written 10.9 years ago by
gv
▴ 30
1
vote
2
replies
2.2k
views
qRT-PCR Sample Maximization software analysis and proper experimental design advice
qPCR
Sample Maximization Analysis
Experimental Design
qRT-PCR
updated 10.8 years ago by
Gordon Smyth
53k • written 10.8 years ago by
Marcelo Laia
▴ 450
1
vote
1
reply
2.2k
views
Are the logFC confidence intervals returned by topTable adjusted for multiple comparisons?
Microarray
qPCR
limma
updated 11.4 years ago by
Gordon Smyth
53k • written 11.5 years ago by
Calin-Jageman, Robert
▴ 30
0
votes
5
replies
2.0k
views
dataset dim for siggenes
qPCR
limma
siggenes
updated 11.4 years ago by
James W. MacDonald
68k • written 11.4 years ago by
Frederico Moraes Ferreira
▴ 100
0
votes
1
reply
1.7k
views
deseq2 for pair-wise analysis
qPCR
qPCR
updated 11.5 years ago by
Michael Love
43k • written 11.5 years ago by
Guest User
★ 13k
0
votes
0
replies
1.5k
views
EasyqPCR package - extracting Standard error values
qPCR
EasyqpcR
qPCR
EasyqpcR
11.6 years ago
Tommaso Raffaello
▴ 60
1
vote
0
replies
1.4k
views
HTqPCR package data layout - how flexible is it?
qPCR
qPCR
11.7 years ago
Guest User
★ 13k
0
votes
0
replies
4.6k
views
Bioconductor 2.14 is released
BiocViews
aCGH
SNP
Sequencing
RNASeq
ChIPSeq
miRNA
Microarray
qPCR
Metabolomics
Coverage
11.8 years ago
Dan Tenenbaum
★ 8.2k
0
votes
2
replies
2.7k
views
First time use of limma for two-color agilent array analysis
qPCR
limma
GeneSpring
qPCR
limma
GeneSpring
updated 11.9 years ago by
James W. MacDonald
68k • written 11.9 years ago by
Calin-Jageman, Robert
▴ 30
0
votes
2
replies
1.9k
views
creating a qPCRset from Fluidigm 96*96 arrays in HTqPCR
qPCR
qPCR
updated 12.0 years ago by
Kipper Fletez-Brant
▴ 150 • written 12.0 years ago by
Norm Allaire
▴ 50
0
votes
5
replies
2.4k
views
SCAN.UPC for Illumina arrays?
RNASeq
qPCR
affy
oligo
frma
RNASeq
qPCR
affy
oligo
frma
updated 12.2 years ago by
Stephen Piccolo
▴ 600 • written 12.2 years ago by
Tim Triche
★ 4.2k
0
votes
0
replies
1.9k
views
ddCt calculation and statistics
qPCR
ddCt
qPCR
ddCt
12.4 years ago
Guest User
★ 13k
0
votes
0
replies
1.5k
views
test qPCR data for differential expression
qPCR
qPCR
12.6 years ago
Andreia Fonseca
▴ 810
0
votes
17
replies
3.9k
views
[Bioc] RNAseq less sensitive than microarrays? Is it a statistical issue?
Sequencing
RNASeq
Microarray
qPCR
Coverage
edgeR
DESeq
Sequencing
RNASeq
Microarray
qPCR
updated 12.7 years ago by
Steve Lianoglou
★ 13k • written 12.7 years ago by
Lucia Peixoto
▴ 330
0
votes
1
reply
4.8k
views
EdgeR vs voom, what to consider when deciding which to use
RNASeq
qPCR
edgeR
RNASeq
qPCR
edgeR
updated 12.9 years ago by
Steve Lianoglou
★ 13k • written 12.9 years ago by
Lucia Peixoto
▴ 330
0
votes
0
replies
1.5k
views
workflow from NormqPCR 5.1 to 5.3
qPCR
NormqPCR
qPCR
NormqPCR
12.9 years ago
James Perkins
▴ 120
0
votes
0
replies
1.5k
views
workflow from NormqPCR 5.1 to 5.3
qPCR
NormqPCR
qPCR
NormqPCR
12.9 years ago
Guest User
★ 13k
0
votes
2
replies
2.3k
views
reading in data in ReadqPCR
qPCR
Annotation
HTqPCR
qPCR
Annotation
HTqPCR
13.0 years ago • updated 12.9 years ago
Guest User
★ 13k
0
votes
1
reply
1.6k
views
replicating ReadqPCR
qPCR
qPCR
updated 13.0 years ago by
james perkins
▴ 300 • written 13.0 years ago by
Guest User
★ 13k
0
votes
1
reply
2.6k
views
Bioconductor Digest, Vol 120, Issue 12
Microarray
qPCR
Coverage
Annotation
Pathways
Visualization
Cancer
Breast
Organism
affy
13.0 years ago
Matthew Thornton
▴ 390
0
votes
2
replies
2.4k
views
HTqPCR problem with creation of qPCRset
qPCR
HTqPCR
qPCR
HTqPCR
updated 13.0 years ago by
James W. MacDonald
68k • written 13.0 years ago by
Elisabeth Gilis
▴ 20
0
votes
0
replies
1.3k
views
Error Bars on EdgeR
qPCR
qPCR
13.0 years ago
Ian Sudbery
▴ 30
0
votes
0
replies
1.7k
views
structure of cfx file for HTqPCR
Microarray
qPCR
cycle
HTqPCR
Microarray
qPCR
cycle
HTqPCR
13.0 years ago
Guest User
★ 13k
0
votes
0
replies
2.0k
views
Biorad iCycler cfx manager files and HTqPCR
Microarray
qPCR
HTqPCR
a4
Microarray
qPCR
HTqPCR
a4
13.0 years ago
b1gorsuch@comcast.net
▴ 20
1
vote
1
reply
1.6k
views
qRT-PCR - reading tab-delimited file (biol & tech replicates)
qPCR
ReadqPCR
qPCR
ReadqPCR
13.0 years ago
boczniak767
▴ 740
0
votes
0
replies
1.1k
views
Using different file formats with oligo and analysis packages using oligo
SNP
Microarray
qPCR
cycle
SNP
Microarray
qPCR
cycle
13.1 years ago
Hans Thompson
▴ 30
0
votes
0
replies
1.4k
views
RankProd absurd results
qPCR
RankProd
qPCR
RankProd
13.2 years ago
Guest User
★ 13k
0
votes
0
replies
3.6k
views
Bioconductor 2.11 is released
BiocViews
SNP
Transcription
Sequencing
miRNA
Microbiome
Microarray
qPCR
Genetics
Coverage
13.3 years ago
Dan Tenenbaum
★ 8.2k
0
votes
0
replies
998
views
Analyzing expression Affymetrix Hugene1.0.st array
qPCR
qPCR
13.4 years ago
Dario Strbenac
★ 1.6k
0
votes
0
replies
1.2k
views
sizepower
qPCR
GUI
qPCR
GUI
13.4 years ago
Michael Salbaum
▴ 80
0
votes
0
replies
1.9k
views
HTqPCR
qPCR
limma
ddCt
HTqPCR
qPCR
limma
ddCt
HTqPCR
13.4 years ago
Heidi Dvinge
★ 2.0k
0
votes
0
replies
1.4k
views
HTqPCR problems
Microarray
qPCR
GO
Preprocessing
GLAD
HTqPCR
Microarray
qPCR
GO
Preprocessing
GLAD
13.5 years ago
cfischer
▴ 10
0
votes
2
replies
2.6k
views
Fwd: help
qPCR
qPCR
updated 13.5 years ago by
Heidi Dvinge
★ 2.0k • written 13.5 years ago by
rakesh sharma
▴ 30
0
votes
0
replies
1.3k
views
HtqPCR-help
qPCR
qPCR
13.5 years ago
rakesh sharma
▴ 30
0
votes
0
replies
1.1k
views
help
qPCR
qPCR
13.5 years ago
Guest User
★ 13k
0
votes
0
replies
1.1k
views
help - HTqPCR and lightcycler
qPCR
HTqPCR
qPCR
HTqPCR
13.5 years ago
Heidi Dvinge
★ 2.0k
119 results • Page
1 of 3
Recent ...
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Comment: Questions about bacon QC and correction on EWAS results
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Tikaaa2sahaaaq2c
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In the world of mobile games, the 88ef game download has gained traction for its performance driven design [free download][1], similar to …
Comment: using limma trend workflow in CAMERA
by
A.Barden
▴ 20
Do you need to set trend.var=TRUE when using camera in the limma-voom pipeline with RNA-Seq data (as apposed to limma-trend pipeline)?
Comment: Upcoming Ensembl API and data access changes - new blog post available
by
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• 0
Just as the Ensembl team transitions to a new platform for streamlined data access, diners can benefit from a digital newks menu prices con…
Comment: Error message that there is no package called Biobase
by
DamionLedner99
• 0
thanks for sharing!!! https://cran.r-project.org/
Comment: msmsTests, inconsistent sign between lFC.Av and LogFC
by
Ben
• 0
Continued here due to posting difficulties: Extract from the results table: ``` Inhibitor Vehicle lFC.Av LogFC ... F1 0.0 27…
Votes
Answer: What happens to genes with low dispersion during dispersion shrinkage in DESeq2
Comment: Are transformed values from rlog /vst log2 normalized counts?
Answer: Are transformed values from rlog /vst log2 normalized counts?
A: DESeq2 normalization vs VST vs rlog
Answer: How to directly decet the outlier samples (libraries) in EdgeR pipeline
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