Showing : qpcr • reset
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nondetects and technical replicates
qPCR nondetects
6 months ago Ed Siefker ▴ 230
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614
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How to perform a cluster analysis in RT-qPCR or HT-qPCR results?
cluster qpcr qpcrNorm clusterProfiler HTqPCR
18 months ago Javier • 0
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2
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1.5k
views
log2FoldChange calculation in DESeq2
DESeq2 RNASeq qPCR qPCRData
2.7 years ago Claire • 0
3
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0
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500
views
Creating qPCRset for nondetects anlaysis from QuantStudio data
nondetects qPCR qPCRData
3.0 years ago jhackett ▴ 30
3
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4
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3.0k
views
Using limma for the analysis of qPCR data
NormqPCR EasyqpcR qPCR HTqPCR limma
updated 2.5 years ago by ▴ 380 • written 3.3 years ago by ▴ 660
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1
reply
771
views
Most liked/utilized qPCR analysis package
qPCR
updated 6.0 years ago by 50k • written 6.0 years ago by ▴ 60
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775
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NormqPCR Package query
SelectHK qpcr Genorm
6.1 years ago jingchakvk • 0
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820
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HTqPCR trouble with changeCtLayout
htqpcr qPCR
6.2 years ago samantha_jeschonek • 0
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4
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1.8k
views
ddCT Package for StepOnePlus qPCR output
qPCR ddCt geneexpression
updated 6.8 years ago by ▴ 120 • written 6.8 years ago by ▴ 60
1
vote
7
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1.6k
views
EDGE: Persistent lrt() and odp() command pi0est() error due to low p values
edge qpcr qvalue
7.2 years ago • updated 6.3 years ago joe.d.moore.ii • 0
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878
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Batch Correction in HTqPCR?
qPCR htqpcr
7.3 years ago bradley • 0
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1.1k
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Replicating read.qPCR - "attribute on NULL"
qpcr R
7.7 years ago t.f.jones • 0
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0
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863
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select samples for qPCR
qpcr sample
8.6 years ago Frederico Moraes Ferreira ▴ 100
1
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2
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1.6k
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qRT-PCR Sample Maximization software analysis and proper experimental design advice
qPCR Sample Maximization Analysis Experimental Design qRT-PCR
updated 9.0 years ago by 50k • written 9.0 years ago by ▴ 450
1
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3
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2.4k
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ddCt calculation using bioconductor package
ddct qPCR
updated 2.9 years ago by ▴ 60 • written 9.1 years ago by ▴ 40
1
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0
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1.8k
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DE analysis of PCR array [was: dataset dim for siggenes]
qPCR Normalization multtest limma siggenes
9.7 years ago • updated 7.3 years ago Gordon Smyth 50k
0
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5
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1.5k
views
dataset dim for siggenes
qPCR limma siggenes
updated 9.7 years ago by 65k • written 9.7 years ago by ▴ 100
1
vote
1
reply
1.8k
views
Are the logFC confidence intervals returned by topTable adjusted for multiple comparisons?
Microarray qPCR limma
updated 9.6 years ago by 50k • written 9.7 years ago by ▴ 30
0
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1
reply
1.2k
views
deseq2 for pair-wise analysis
qPCR qPCR
updated 9.7 years ago by 42k • written 9.7 years ago by ★ 13k
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0
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1.3k
views
EasyqPCR package - extracting Standard error values
qPCR EasyqpcR qPCR EasyqpcR
9.9 years ago Tommaso Raffaello ▴ 60
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1.0k
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HTqPCR package data layout - how flexible is it?
qPCR qPCR
9.9 years ago Guest User ★ 13k
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0
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4.1k
views
Bioconductor 2.14 is released
BiocViews aCGH SNP Sequencing RNASeq ChIPSeq miRNA Microarray qPCR Metabolomics Coverage
10.1 years ago Dan Tenenbaum ★ 8.2k
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2
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2.2k
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First time use of limma for two-color agilent array analysis
qPCR limma GeneSpring qPCR limma GeneSpring
updated 10.2 years ago by 65k • written 10.2 years ago by ▴ 30
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2
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1.6k
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creating a qPCRset from Fluidigm 96*96 arrays in HTqPCR
qPCR qPCR
updated 10.2 years ago by ▴ 150 • written 10.2 years ago by ▴ 50
0
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5
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1.7k
views
SCAN.UPC for Illumina arrays?
RNASeq qPCR affy oligo frma RNASeq qPCR affy oligo frma
updated 10.5 years ago by ▴ 590 • written 10.5 years ago by ★ 4.2k
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0
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1.5k
views
ddCt calculation and statistics
qPCR ddCt qPCR ddCt
10.7 years ago Guest User ★ 13k
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0
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1.2k
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test qPCR data for differential expression
qPCR qPCR
10.8 years ago Andreia Fonseca ▴ 810
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17
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2.7k
views
[Bioc] RNAseq less sensitive than microarrays? Is it a statistical issue?
Sequencing RNASeq Microarray qPCR Coverage edgeR DESeq Sequencing RNASeq Microarray qPCR
updated 11.0 years ago by ★ 13k • written 11.0 years ago by ▴ 330
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1
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4.4k
views
EdgeR vs voom, what to consider when deciding which to use
RNASeq qPCR edgeR RNASeq qPCR edgeR
updated 11.1 years ago by ★ 13k • written 11.1 years ago by ▴ 330
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0
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1.1k
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workflow from NormqPCR 5.1 to 5.3
qPCR NormqPCR qPCR NormqPCR
11.2 years ago James Perkins ▴ 120
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0
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1.1k
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workflow from NormqPCR 5.1 to 5.3
qPCR NormqPCR qPCR NormqPCR
11.2 years ago Guest User ★ 13k
0
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1
reply
1.3k
views
replicating ReadqPCR
qPCR qPCR
updated 11.2 years ago by ▴ 300 • written 11.2 years ago by ★ 13k
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2
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1.9k
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reading in data in ReadqPCR
qPCR Annotation HTqPCR qPCR Annotation HTqPCR
11.2 years ago Guest User ★ 13k
0
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1
reply
2.2k
views
Bioconductor Digest, Vol 120, Issue 12
Microarray qPCR Coverage Annotation Pathways Visualization Cancer Breast Organism affy
11.2 years ago Matthew Thornton ▴ 350
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2
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2.0k
views
HTqPCR problem with creation of qPCRset
qPCR HTqPCR qPCR HTqPCR
updated 11.2 years ago by 65k • written 11.2 years ago by ▴ 20
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0
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1.1k
views
Error Bars on EdgeR
qPCR qPCR
11.2 years ago Ian Sudbery ▴ 30
0
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0
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1.3k
views
structure of cfx file for HTqPCR
Microarray qPCR cycle HTqPCR Microarray qPCR cycle HTqPCR
11.3 years ago Guest User ★ 13k
0
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0
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1.6k
views
Biorad iCycler cfx manager files and HTqPCR
Microarray qPCR HTqPCR a4 Microarray qPCR HTqPCR a4
11.3 years ago b1gorsuch@comcast.net ▴ 20
1
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1
reply
1.2k
views
qRT-PCR - reading tab-delimited file (biol & tech replicates)
qPCR ReadqPCR qPCR ReadqPCR
11.3 years ago boczniak767 ▴ 720
0
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0
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862
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Using different file formats with oligo and analysis packages using oligo
SNP Microarray qPCR cycle SNP Microarray qPCR cycle
11.3 years ago Hans Thompson ▴ 30
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0
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1.1k
views
RankProd absurd results
qPCR RankProd qPCR RankProd
11.4 years ago Guest User ★ 13k
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0
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3.1k
views
Bioconductor 2.11 is released
BiocViews SNP Transcription Sequencing miRNA Microbiome Microarray qPCR Genetics Coverage
11.6 years ago Dan Tenenbaum ★ 8.2k
0
votes
0
replies
729
views
Analyzing expression Affymetrix Hugene1.0.st array
qPCR qPCR
11.6 years ago Dario Strbenac ★ 1.5k
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0
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874
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sizepower
qPCR GUI qPCR GUI
11.6 years ago Michael Salbaum ▴ 80
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0
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1.6k
views
HTqPCR
qPCR limma ddCt HTqPCR qPCR limma ddCt HTqPCR
11.7 years ago Heidi Dvinge ★ 2.0k
0
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0
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1.1k
views
HTqPCR problems
Microarray qPCR GO Preprocessing GLAD HTqPCR Microarray qPCR GO Preprocessing GLAD
11.7 years ago cfischer ▴ 10
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0
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1.1k
views
HtqPCR-help
qPCR qPCR
11.7 years ago rakesh sharma ▴ 30
0
votes
2
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2.2k
views
Fwd: help
qPCR qPCR
updated 11.7 years ago by ★ 2.0k • written 11.7 years ago by ▴ 30
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0
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827
views
help
qPCR qPCR
11.7 years ago Guest User ★ 13k
0
votes
0
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874
views
help - HTqPCR and lightcycler
qPCR HTqPCR qPCR HTqPCR
11.8 years ago Heidi Dvinge ★ 2.0k
50 results • Page 1 of 1
Recent ...
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Comment: How to use bootRanges to bootstrap small RNA loci (nullranges package) by Michael Love 42k
> Any suggestions for methylation data segmentation? I think the same segmentation can be used.
Comment: deseq2 results by swbarnes2 ★ 1.3k
Cross-posted https://www.biostars.org/p/9594331/#9594458
Answer: Mac ARM64 build report for BioC 3.19 from 'kjohnson3' reporting ERROR which it by Mike Smith ★ 6.5k
The other answers here are all good and demonstrate the issue with floating point comparisons nicely. I'd like to add that your particular…
Comment: More regions in union when increasing DBA$config$mergeOverlap by Ian D. ▴ 70
Nudging my question. I could do with confirmation before proceeding with my current projects. Thank you.
Comment: Extremely small p-values using Limma for proteomic data by Robert Castelo ★ 3.3k
From the point of view of visualization, I find handy the fact that raw p-values give more resolution than adjusted ones, which allows one …
Votes
A: Volcanoplot with limma - RAW P-values or Adj.P-Values
Answer: Mac ARM64 build report for BioC 3.19 from 'kjohnson3' reporting ERROR which it
Comment: Mac ARM64 build report for BioC 3.19 from 'kjohnson3' reporting ERROR which it
Answer: minfi latest update for EPIC V2 chip
A: Error in DESeqDataSet : some values in assay are not integers
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