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qualitycontrol
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0
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replies
1.2k
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getsex function error.
QualityControl
methylationArrayAnalysis
3.0 years ago
zusman
• 0
0
votes
1
reply
1.3k
views
Error when running qAlign from QuasR package for sequence alignment & QC.
QualityControl
Alignment
QuasR
updated 4.0 years ago by
Michael Stadler
▴ 350 • written 4.0 years ago by
h.kozlowski
• 0
0
votes
0
replies
759
views
AffyExpress choose relative path folder
folder
quality
QualityControl
AffyExpress
4.2 years ago
bastien_chassagnol
• 0
0
votes
2
replies
1.7k
views
Quality control for Affymetrix GeneChip Mouse Gene 2.0 ST Array
qc
qualitycontrol
arrayqualitymetrics
mouse gene st 2.0
affymetrix
updated 7.5 years ago by
James W. MacDonald
68k • written 7.5 years ago by
n.lu
• 0
3
votes
2
replies
1.1k
views
Q score filter to each base in QualityScaledDNAStringSet
qualitycontrol
updated 7.9 years ago by
Mike Smith
★ 6.6k • written 7.9 years ago by
XIA.PAN
▴ 20
0
votes
0
replies
1.2k
views
Shinymethyl 850K Array quality control signal cutoffs
shinymethyl
minfi
epic microarray
methylationepic
qualitycontrol
8.0 years ago
chelsey.ju
• 0
2
votes
0
replies
1.3k
views
Quality Assessment of one color Agilent arrays?
limma
one colour
agilent microarrays
qualitycontrol
arrayqualitymetrics
8.3 years ago
Bouzid.a
▴ 20
3
votes
14
replies
4.3k
views
GWAS analysis with Illumina HumanOmni5-4 BeadChip - recommended software and workflow
GWASTools
qualitycontrol
HumanOmni5-4BeadChip
GenomeStudio
illumina
updated 8.8 years ago by
Stephanie M. Gogarten
▴ 890 • written 8.8 years ago by
Lna
• 0
2
votes
2
replies
1.7k
views
Manually compute NUSE score
NUSE
qualitycontrol
microarray
updated 9.1 years ago by
Diego Diez
▴ 760 • written 9.1 years ago by
jacorvar
▴ 40
4
votes
2
replies
2.7k
views
Quality control on RNA-Seq (level 3) data from TCGA
rna-seq
GC-Content
qualitycontrol
updated 9.3 years ago by
Matthew McCormack
▴ 180 • written 9.3 years ago by
NS
▴ 60
1
vote
2
replies
1.9k
views
array quality control, affy probes, contracts setting in limma, result interpretation and weights
limma
affy
probe
qualitycontrol
design and contrast matrix
updated 10.1 years ago by
Gordon Smyth
52k • written 10.1 years ago by
alakatos
▴ 130
0
votes
1
reply
1.4k
views
read.maimages problem under sun ?
Microarray
OneChannel
TwoChannel
DifferentialExpression
Preprocessing
QualityControl
affy
17.8 years ago
Amin Moghaddasi
▴ 130
12 results • Page
1 of 1
Recent ...
Replies
Comment: Overcoming confounding in batch effect correction
by
ATpoint
★ 4.7k
biostars.org and the [bioinformatics reddit][1] are suitable and have much larger audience than this forum here. [1]: https://www.reddi…
Comment: Overcoming confounding in batch effect correction
by
bbao
▴ 10
Thank you! And apologies for posting here. Do you know which forum I should go to in the future for questions like these?
Comment: For some reason I can't update BiocManager to 3.20
by
shepherl
4.1k
interesting. it could be since this is not your installation that it was installed by an admin that you do not have access to perform this…
Comment: Overcoming confounding in batch effect correction
by
ATpoint
★ 4.7k
Hi, this is not related to Bioconductor directly. And no, you cannot correct anything because in your own batch you only have a single samp…
Comment: MEDIPS - error using MEDIPS.CpGenrich
by
sg
• 0
I have the same error when I use 22 chrs with the paramenters chr.select: Error in h(simpleError(msg, call)) : error in evaluating the …
Votes
Answer: Store Matrix in DataFrame Cell
Answer: enrichGOgradient color change
Comment: Overcoming confounding in batch effect correction
Overcoming confounding in batch effect correction
Answer: Standardization of rlog transformed counts before PCA
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