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qualitycontrol
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0
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1.2k
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getsex function error.
QualityControl
methylationArrayAnalysis
3.1 years ago
zusman
• 0
0
votes
1
reply
1.3k
views
Error when running qAlign from QuasR package for sequence alignment & QC.
QualityControl
Alignment
QuasR
updated 4.1 years ago by
Michael Stadler
▴ 350 • written 4.1 years ago by
h.kozlowski
• 0
0
votes
0
replies
784
views
AffyExpress choose relative path folder
folder
quality
QualityControl
AffyExpress
4.3 years ago
bastien_chassagnol
• 0
0
votes
2
replies
1.8k
views
Quality control for Affymetrix GeneChip Mouse Gene 2.0 ST Array
qc
qualitycontrol
arrayqualitymetrics
mouse gene st 2.0
affymetrix
updated 7.6 years ago by
James W. MacDonald
68k • written 7.6 years ago by
n.lu
• 0
3
votes
2
replies
1.1k
views
Q score filter to each base in QualityScaledDNAStringSet
qualitycontrol
updated 8.0 years ago by
Mike Smith
★ 6.6k • written 8.0 years ago by
XIA.PAN
▴ 20
0
votes
0
replies
1.2k
views
Shinymethyl 850K Array quality control signal cutoffs
shinymethyl
minfi
epic microarray
methylationepic
qualitycontrol
8.1 years ago
chelsey.ju
• 0
2
votes
0
replies
1.3k
views
Quality Assessment of one color Agilent arrays?
limma
one colour
agilent microarrays
qualitycontrol
arrayqualitymetrics
8.4 years ago
Bouzid.a
▴ 20
3
votes
14
replies
4.4k
views
GWAS analysis with Illumina HumanOmni5-4 BeadChip - recommended software and workflow
GWASTools
qualitycontrol
HumanOmni5-4BeadChip
GenomeStudio
illumina
updated 8.9 years ago by
Stephanie M. Gogarten
▴ 890 • written 8.9 years ago by
Lna
• 0
2
votes
2
replies
1.7k
views
Manually compute NUSE score
NUSE
qualitycontrol
microarray
updated 9.2 years ago by
Diego Diez
▴ 760 • written 9.2 years ago by
jacorvar
▴ 40
4
votes
2
replies
2.8k
views
Quality control on RNA-Seq (level 3) data from TCGA
rna-seq
GC-Content
qualitycontrol
updated 9.4 years ago by
Matthew McCormack
▴ 180 • written 9.4 years ago by
NS
▴ 60
1
vote
2
replies
2.0k
views
array quality control, affy probes, contracts setting in limma, result interpretation and weights
limma
affy
probe
qualitycontrol
design and contrast matrix
updated 10.2 years ago by
Gordon Smyth
52k • written 10.2 years ago by
alakatos
▴ 130
0
votes
1
reply
1.4k
views
read.maimages problem under sun ?
Microarray
OneChannel
TwoChannel
DifferentialExpression
Preprocessing
QualityControl
affy
17.8 years ago
Amin Moghaddasi
▴ 130
12 results • Page
1 of 1
Recent ...
Replies
Answer: affy::rma results doesn't match with ncbi website
by
ATpoint
★ 4.7k
Exact OMCIS reproduction down to the values without code and software version is borderline impossible. Either use the values as provided o…
Answer: Use of org.Rn.eg.db with GRCr8 reference genome
by
James W. MacDonald
68k
You've got it backwards. It should be ``` adult_res_df$symbol <- mapIds(org.Rn.eg.db, keys = rownames(adult_res_df), column = "ENSEMBL"…
Comment: DESeq2 swap ensembl gene id rownames with gene symbol column
by
Erika
• 0
Alternatively, you could have added a column with the common gene names. Assuming your dataframe `df` was created using `DESeq()`, somethin…
Answer: Clarification on GOALL / GO2ALLORFs mapping
by
James W. MacDonald
68k
It appears that 'negative regulation of glycogen biosynthesis' has an 'is a' relationship with 'glycogen biosynthetic process' https://www.…
Comment: Can't post a question?
by
DavideSant
• 0
Thank you, this was super useful!
Votes
Comment: Can't post a question?
Answer: Limma - Complex 2-way multi-level contrast with paired samples
Answer: [ChIP-seq] DESeq2 on counts matrix from union set of called peaks
Help with creation of an OrgDB package and conduction of a bioinformatical analysis of gene expression
Answer: Loading Ensembl 98 EnsDb from Annotation Hub fails with database disk image malf
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