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qualitycontrol
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0
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1.4k
views
getsex function error.
QualityControl
methylationArrayAnalysis
3.9 years ago
zusman
• 0
0
votes
1
reply
1.6k
views
Error when running qAlign from QuasR package for sequence alignment & QC.
QualityControl
Alignment
QuasR
updated 5.0 years ago by
Michael Stadler
▴ 350 • written 5.0 years ago by
h.kozlowski
• 0
0
votes
0
replies
957
views
AffyExpress choose relative path folder
folder
quality
QualityControl
AffyExpress
5.1 years ago
bastien_chassagnol
• 0
0
votes
2
replies
2.1k
views
Quality control for Affymetrix GeneChip Mouse Gene 2.0 ST Array
qc
qualitycontrol
arrayqualitymetrics
mouse gene st 2.0
affymetrix
updated 8.4 years ago by
James W. MacDonald
68k • written 8.4 years ago by
n.lu
• 0
3
votes
2
replies
1.3k
views
Q score filter to each base in QualityScaledDNAStringSet
qualitycontrol
updated 8.9 years ago by
Mike Smith
★ 6.6k • written 8.9 years ago by
XIA.PAN
▴ 20
0
votes
0
replies
1.5k
views
Shinymethyl 850K Array quality control signal cutoffs
shinymethyl
minfi
epic microarray
methylationepic
qualitycontrol
8.9 years ago
chelsey.ju
• 0
2
votes
0
replies
1.5k
views
Quality Assessment of one color Agilent arrays?
limma
one colour
agilent microarrays
qualitycontrol
arrayqualitymetrics
9.2 years ago
Bouzid.a
▴ 20
3
votes
14
replies
5.1k
views
GWAS analysis with Illumina HumanOmni5-4 BeadChip - recommended software and workflow
GWASTools
qualitycontrol
HumanOmni5-4BeadChip
GenomeStudio
illumina
updated 9.7 years ago by
Stephanie M. Gogarten
▴ 890 • written 9.7 years ago by
Lna
• 0
2
votes
2
replies
2.0k
views
Manually compute NUSE score
NUSE
qualitycontrol
microarray
updated 10.0 years ago by
Diego Diez
▴ 760 • written 10.0 years ago by
jacorvar
▴ 40
4
votes
2
replies
3.2k
views
Quality control on RNA-Seq (level 3) data from TCGA
rna-seq
GC-Content
qualitycontrol
updated 10.2 years ago by
Matthew McCormack
▴ 180 • written 10.2 years ago by
NS
▴ 60
1
vote
2
replies
2.2k
views
array quality control, affy probes, contracts setting in limma, result interpretation and weights
limma
affy
probe
qualitycontrol
design and contrast matrix
updated 11.0 years ago by
Gordon Smyth
53k • written 11.1 years ago by
alakatos
▴ 130
0
votes
1
reply
1.6k
views
read.maimages problem under sun ?
Microarray
OneChannel
TwoChannel
DifferentialExpression
Preprocessing
QualityControl
affy
18.7 years ago
Amin Moghaddasi
▴ 130
12 results • Page
1 of 1
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Comment: Pairwise comparison of multiple groups with different base
by
ja569116
• 0
Hi @mikelove I have a similar situation, and I feel that I have interpreted the results in the wrong way. In my case I would like to identi…
Comment: Are individual-mouse-based statistics possible in CellChat?
by
TikTsossakaas33ocissalpc
• 0
Questions about comparing groups and statistical significance highlight how data driven thinking matters across fields. In online mobile ga…
Comment: DESeq2 - how many surrogate variables from svaseq, use of lfcshrink
by
ja569116
• 0
Hi @atpoint Thanks for the information. Could you please expand on when to use adjusted p-values vs nominal p-values. My understanding was …
Answer: limpa analysis advice
by
Gordon Smyth
53k
It is actually very hard to estimate the DPC from observed data, because the curve is function of unobserved intensities rather than a func…
Answer: When to use edgeR or limma
by
Gordon Smyth
53k
The short answer is that we generally prefer edgeR for applications with lots of small counts and limma for complex designs with random eff…
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Answer: When to use edgeR or limma
Answer: When to use edgeR or limma
Answer: When to use edgeR or limma
Answer: When to use edgeR or limma
A: deseq2 - paired samples in 2 sequencing types with very different library sizes
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