Bioconductor Qualitycontrol

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QualityControl methylationArrayAnalysis

3.9 years ago zusman • 0

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1.5k

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QualityControl Alignment QuasR

updated 4.9 years ago by Michael Stadler ▴ 350 • written 4.9 years ago by h.kozlowski • 0

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937

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folder quality QualityControl AffyExpress

5.0 years ago bastien_chassagnol • 0

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qc qualitycontrol arrayqualitymetrics mouse gene st 2.0 affymetrix

updated 8.3 years ago by James W. MacDonald 68k • written 8.3 years ago by n.lu • 0

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1.3k

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qualitycontrol

updated 8.8 years ago by Mike Smith ★ 6.6k • written 8.8 years ago by XIA.PAN ▴ 20

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1.4k

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shinymethyl minfi epic microarray methylationepic qualitycontrol

8.8 years ago chelsey.ju • 0

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limma one colour agilent microarrays qualitycontrol arrayqualitymetrics

9.2 years ago Bouzid.a ▴ 20

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GWASTools qualitycontrol HumanOmni5-4BeadChip GenomeStudio illumina

updated 9.6 years ago by Stephanie M. Gogarten ▴ 890 • written 9.6 years ago by Lna • 0

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1.9k

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NUSE qualitycontrol microarray

updated 10.0 years ago by Diego Diez ▴ 760 • written 10.0 years ago by jacorvar ▴ 40

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3.1k

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rna-seq GC-Content qualitycontrol

updated 10.1 years ago by Matthew McCormack ▴ 180 • written 10.1 years ago by NS ▴ 60

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2.1k

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limma affy probe qualitycontrol design and contrast matrix

updated 11.0 years ago by Gordon Smyth 53k • written 11.0 years ago by alakatos ▴ 130

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1.6k

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Microarray OneChannel TwoChannel DifferentialExpression Preprocessing QualityControl affy

18.6 years ago Amin Moghaddasi ▴ 130

12 results • Page 1 of 1

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Comment: How does contrasts.fit do in limma to extract comparisons with a model having in by jtsy6383 • 0

Thanks for the reply Gordon. I am also working on the project and have been tasked to reformulate and add some details. We're interested i…

Answer: How does contrasts.fit do in limma to extract comparisons with a model having in by Gordon Smyth 53k

The limma Users Guide explains how to test for interactions or to test for contrasts very easily. limma can work with any design matrix, bu…

Answer: NUPOP usage by shepherl 4.2k

You should read the documentation in the package especially the package vignette https://bioconductor.org/packages/release/bioc/html/NuPoP.…

Comment: How can I correctly use phyloseq with Docker? by fnfgame • 0

In a rocker image, this error usually means the Bioconductor install happened as root but the runtime library paths used by the shiny user …

Comment: DECIPHER DesignProbes unable to design FISH-probes by Erik Wright ▴ 150

Are the sequences aligned (i.e., the same width) before running `TileSeqs()`?

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C: DESeq2 Following RSEM

Upcoming Ensembl API and data access changes - new blog post available

Comment: Highly similar RNA-seq samples in PCA - pooling or technical duplication?

Answer: Large logFC but somewhat high FDR

Comment: upstream git branches of bioc-release

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Popular Question to Istvan Albert ▴ 50

Popular Question to Dario Strbenac ★ 1.6k

Scholar to Nikos Ignatiadis ▴ 180