Bioconductor Qualitycontrol

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QualityControl methylationArrayAnalysis

3.6 years ago zusman • 0

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1.5k

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QualityControl Alignment QuasR

updated 4.6 years ago by Michael Stadler ▴ 350 • written 4.6 years ago by h.kozlowski • 0

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863

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folder quality QualityControl AffyExpress

4.7 years ago bastien_chassagnol • 0

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qc qualitycontrol arrayqualitymetrics mouse gene st 2.0 affymetrix

updated 8.0 years ago by James W. MacDonald 68k • written 8.0 years ago by n.lu • 0

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1.2k

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qualitycontrol

updated 8.5 years ago by Mike Smith ★ 6.6k • written 8.5 years ago by XIA.PAN ▴ 20

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1.3k

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shinymethyl minfi epic microarray methylationepic qualitycontrol

8.5 years ago chelsey.ju • 0

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limma one colour agilent microarrays qualitycontrol arrayqualitymetrics

8.9 years ago Bouzid.a ▴ 20

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4.7k

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GWASTools qualitycontrol HumanOmni5-4BeadChip GenomeStudio illumina

updated 9.3 years ago by Stephanie M. Gogarten ▴ 890 • written 9.3 years ago by Lna • 0

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1.8k

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NUSE qualitycontrol microarray

updated 9.7 years ago by Diego Diez ▴ 760 • written 9.7 years ago by jacorvar ▴ 40

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rna-seq GC-Content qualitycontrol

updated 9.8 years ago by Matthew McCormack ▴ 180 • written 9.8 years ago by NS ▴ 60

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limma affy probe qualitycontrol design and contrast matrix

updated 10.7 years ago by Gordon Smyth 52k • written 10.7 years ago by alakatos ▴ 130

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Microarray OneChannel TwoChannel DifferentialExpression Preprocessing QualityControl affy

18.3 years ago Amin Moghaddasi ▴ 130

12 results • Page 1 of 1

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Comment: How to account for solvent controls in DESeq2 when comparing follicular vs lutea by James W. MacDonald 68k

Yes. You can infer that by figuring out what each coefficient measures. Here is your design matrix: ``` > targets ID Name phase G…

Comment: How to account for solvent controls in DESeq2 when comparing follicular vs lutea by snijesh ▴ 200

I would like to clarify whether the command `res <- results(dds, name = "phaseLP.conditionTreated")` is the correct approach to generate …

Comment: How to account for solvent controls in DESeq2 when comparing follicular vs lutea by James W. MacDonald 68k

Not sure I understand. You ask how to do something and then show how one would do so.

Comment: DiffBind getting Fold values of near 0 by littlefishes20 ▴ 10

Same issues. All peaks return to a fold near 0, although they are significant when visualizing in IGV. Please find the MAplot and volcanoPl…

Comment: How to account for solvent controls in DESeq2 when comparing follicular vs lutea by snijesh ▴ 200

I have checked DEGs between Solvent Control (SC) of FP and LP and there are noticebale differences in terms of DEGs. ``` # Checking SC in …

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How to account for solvent controls in DESeq2 when comparing follicular vs luteal phase?

Answer: How to account for solvent controls in DESeq2 when comparing follicular vs lutea

Comment: Using DESeq2 on single cell RNA Seq data of same cell type but different conditi

Can NanoString data be analyzed using DESeq2?

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