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News: Bioconductor Release 3.12 Schedule Posted
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5.0 years ago shepherl 4.2k
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1.3k
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News: Issues with annotation packages
annotation news release News
5.4 years ago kayla.interdonato ▴ 160
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News: Bioconductor 3.11 OrgDb and TxDb packages now available
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5.4 years ago kayla.interdonato ▴ 160
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News: Bioconductor 3.11 is Released!
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5.4 years ago shepherl 4.2k
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News: Import Deadlines for RELEASE 3.11
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5.4 years ago shepherl 4.2k
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News: Last Day to Submit New Packages for Bioconductor Release 3.11
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5.5 years ago shepherl 4.2k
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News: New Package and New Docker Image Submission Deadline for Bioc Release 3.11
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5.5 years ago shepherl 4.2k
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News: Deadline for devel branch 3.11 to pass R CMD build and R CMD check
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5.5 years ago shepherl 4.2k
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961
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News: Bioconductor Release 3.10 Code Freeze Deadline
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5.5 years ago shepherl 4.2k
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1.1k
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News: Bioconductor 3.11 db0s are available
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5.5 years ago kayla.interdonato ▴ 160
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1.1k
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News: Bioconductor Release 3.11 Schedule Posted
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5.5 years ago shepherl 4.2k
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1.3k
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News: List of Deprecated Packages Bioc 3.11
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5.6 years ago shepherl 4.2k
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1.2k
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News: List of Deprecated Packages Bioc 3.11
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5.7 years ago shepherl 4.2k
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857
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News: Single Package Builder for New Package Submissions
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5.8 years ago shepherl 4.2k
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1.2k
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News: List of Deprecated Packages Bioc 3.11
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5.8 years ago shepherl 4.2k
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2
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News: Final List of Deprecated Packages for Bioc3.10
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5.9 years ago • updated 5.8 years ago shepherl 4.2k
6
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News: Bioconductor 3.10 is released!!
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5.9 years ago shepherl 4.2k
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0
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1.3k
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News: Important Deadlines for RELEASE
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updated 5.9 years ago by 25k • written 5.9 years ago by 4.2k
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0
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977
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News: Bioconductor 3.10 db0s are available
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5.9 years ago kayla.interdonato ▴ 160
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1.0k
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News: Deadline for commits to current Release 3.9 Branch
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5.9 years ago shepherl 4.2k
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News: Package Submission Deadline is TODAY!!
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6.0 years ago shepherl 4.2k
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1.2k
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News: List of Deprecated Packages Bioc 3.10
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6.0 years ago shepherl 4.2k
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News: Deadline for commits to current Release 3.9 Branch and Devel 3.10
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6.0 years ago shepherl 4.2k
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News: New Package Submission Deadline for Bioc Release 3.10
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6.0 years ago shepherl 4.2k
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869
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News: Bioconductor 3.10 release schedule
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6.0 years ago shepherl 4.2k
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1
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1.4k
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News: List of Deprecated Packages Bioc 3.10
annotation experimentdata software deprecation release News
6.1 years ago • updated 6.0 years ago shepherl 4.2k
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3
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1.5k
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News: List of Deprecated Packages Bioc 3.10
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6.3 years ago shepherl 4.2k
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1.2k
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News: Initial List of Deprecated Packages Bioc 3.10
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6.4 years ago • updated 6.3 years ago shepherl 4.2k
4
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News: Bioconductor 3.9 is released
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6.4 years ago shepherl 4.2k
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861
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News: Important Change to Release 3.9
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6.4 years ago shepherl 4.2k
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News: Important Release Deadlines this week!!!
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6.4 years ago shepherl 4.2k
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1.3k
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News: Deadline for devel branch 3.9 to pass R CMD build and R CMD check
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6.5 years ago shepherl 4.2k
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1.1k
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News: Package Submission Deadline is TODAY!!
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6.5 years ago shepherl 4.2k
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News: Deadline for commits to current Release 3.8 Branch
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6.5 years ago shepherl 4.2k
1
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1.1k
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News: New Package Submission Deadline for Bioc Release 3.9
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6.5 years ago shepherl 4.2k
2
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1.3k
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News: Bioconductor 3.9 release schedule
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6.5 years ago shepherl 4.2k
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1.6k
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News: List of Deprecated Package Bioc 3.9
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6.6 years ago shepherl 4.2k
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2
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1.2k
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Gallus gallus package genome update release
genome novel package release
updated 6.6 years ago by 68k • written 6.6 years ago by • 0
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News: List of Deprecated Package Bioc 3.9
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6.7 years ago shepherl 4.2k
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11
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News: Bioconductor 3.8 is released
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updated 6.7 years ago by • 0 • written 6.9 years ago by ★ 6.8k
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3
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News: Initial List of Deprecated Package Bioc 3.9
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updated 6.9 years ago by ★ 13k • written 6.9 years ago by 4.2k
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1.2k
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News: Package Submission Deadline is TODAY!!
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7.0 years ago shepherl 4.2k
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1
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1.0k
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News: Ensembl 94 has been released
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7.0 years ago Thomas Maurel ▴ 800
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News: Deadline for devel branch 3.8 to pass R CMD build and R CMD check
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7.0 years ago shepherl 4.2k
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News: Deadline for commits to current Release 3.7 Branch
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7.0 years ago shepherl 4.2k
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1.1k
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News: Final List of Deprecated Packages for Bioc3.8
deprecate release News
7.0 years ago shepherl 4.2k
2
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988
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News: New Package Submission Deadline for Bioc Release 3.8
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7.0 years ago shepherl 4.2k
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956
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News: BioC 3.8 release schedule
bioconductor release news News
7.0 years ago Valerie Obenchain ★ 6.8k
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907
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DESerq2 older releases
deseq2 release
updated 7.0 years ago by 43k • written 7.0 years ago by ▴ 150
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News: List of Deprecated Packages for Bioc3.8
package release deprecate News
7.1 years ago shepherl 4.2k
131 results • Page 2 of 3
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Comment: Guidance on limma for pseudobulk scRNA-seq with multi-factor design by James W. MacDonald 68k
It may not be that common for bulk RNA-Seq, but in my experience it's very common for bulk miRNA-Seq.
Comment: Guidance on limma for pseudobulk scRNA-seq with multi-factor design by abaed • 0
Nice. That's great to hear. `sva` was actually the next step I was planning to try. My colleagues haven't seen this kind of pattern before …
Comment: Guidance on limma for pseudobulk scRNA-seq with multi-factor design by James W. MacDonald 68k
It is not uncommon for library size to be apparent in an MDS plot. You can use `sva` or `RUV` to account for that.
Comment: p-adjusted values in multiple comparisons by Josh • 0
Yes, using lmFit with block and duplicateCorrelation is appropriate; mobile data collection can illustrate blocking importance. First estim…
Comment: Guidance on limma for pseudobulk scRNA-seq with multi-factor design by abaed • 0
Understood, thanks. The issue I'm seeing is that even after normalization, the MDSplot still orders samples by library size. I suspect cell…
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Comment: Guidance on limma for pseudobulk scRNA-seq with multi-factor design
Answer: Guidance on limma for pseudobulk scRNA-seq with multi-factor design
Answer: Guidance on limma for pseudobulk scRNA-seq with multi-factor design
Comment: Guidance on limma for pseudobulk scRNA-seq with multi-factor design
Comment: How to construct a BSgenome object from a custom genome assembly using BSgenomeF
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