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tcgabiolinks
•
reset
0
votes
4
replies
2.2k
views
how to reformat complex list object (derived with TCGAbiolinks)?
TCGA
tcgabiolinks
list
reformat
8.1 years ago
Guido Hooiveld
★ 4.1k
0
votes
0
replies
870
views
TCGAvisualize_EAbarplot error in TCGAbiolinks
tcgabiolinks
tcgavisualize_EAbarplot
differential expression
8.1 years ago
fawazfebin
▴ 60
0
votes
0
replies
1.3k
views
Error in move(i, file.path(path, i)) : I could not find the file: 95a5d709-7454-4f76-84b0-a505c32baeb5 ; GDCdownload error
tcgabiolinks
gdcdownload
tcga-brca
8.2 years ago
fawazfebin
▴ 60
3
votes
5
replies
3.4k
views
GDCdownload error in TCGAbiolinks: Invalid zip name argument
tcgabiolinks
gdcdownload
unzip
updated 8.2 years ago by
Tiago Chedraoui Silva
▴ 260 • written 8.2 years ago by
fawazfebin
▴ 60
7
votes
6
replies
4.1k
views
Analysis using TCGAbiolinks
tcgabiolinks
triple negative breast cancer
data sets
updated 8.2 years ago by
antonio.colaprico
▴ 50 • written 8.2 years ago by
fawazfebin
▴ 60
0
votes
0
replies
1.3k
views
Reasoning for illegal operation
tcgabiolinks
illegaloperation
gdcprepare
8.2 years ago
lisa8191
• 0
2
votes
5
replies
2.6k
views
Error when prepare the TCGAdata
tcgabiolinks
dna methylation
updated 8.3 years ago by
Marcel Ramos
700 • written 8.3 years ago by
michaelwxf2012
• 0
6
votes
11
replies
4.5k
views
Error and weird result of TCGAanalyze_Normalization function using the R package TCGAbiolinks for normalization of raw HTSeq counts
tcgabiolinks
rnaseq
normalization
EDASeq
updated 8.3 years ago by
antonio.colaprico
▴ 50 • written 8.3 years ago by
svlachavas
▴ 840
1
vote
7
replies
3.3k
views
Cannot retrieve projects from TCGA using getGDCprojects function
tcgabiolinks
TCGA
software error
8.3 years ago
jacorvar
▴ 40
1
vote
5
replies
1.8k
views
update TCGAbiolinks to version 3.6 and GDCquery doesn't work
software error
tcgabiolinks
updated 8.3 years ago by
eshelden
▴ 40 • written 8.3 years ago by
sechenmo
• 0
1
vote
2
replies
2.2k
views
TCGABiolinks::GDCquery() suddenly sending back unknown error
software error
error
tcgabiolinks
GDCquery
updated 8.3 years ago by
eshelden
▴ 40 • written 8.3 years ago by
jrlarsen
▴ 10
2
votes
2
replies
3.2k
views
TCGAbiolinks Download ERROR
TCGA
tcgabiolinks
download
error
updated 8.3 years ago by
eshelden
▴ 40 • written 8.3 years ago by
Talip
▴ 10
4
votes
2
replies
3.4k
views
TCGA-biolink: GRCH38 RNA-seq, normalized counts matrix, Converting ensemble gene name into common gene name
tcgabiolinks
grch38
annotation
updated 8.3 years ago by
Tiago C. Silva
▴ 270 • written 8.4 years ago by
salvocomplicazioni1
• 0
6
votes
3
replies
3.3k
views
TCGAbiolinks GDCquery Error: Parsing problems
tcgabiolinks
updated 8.3 years ago by
maysa_taheir
▴ 50 • written 8.4 years ago by
Ramiro Magno
▴ 100
2
votes
11
replies
4.9k
views
package or namespace load failed for TCGAbiolinks
tcgabiolinks
updated 8.4 years ago by
wenhuo hu
▴ 200 • written 8.5 years ago by
jason.yijialin
• 0
0
votes
1
reply
1.7k
views
Error downloading the package
tcgabiolinks
TCGA
DOWNLOAD
updated 8.4 years ago by
James W. MacDonald
68k • written 8.4 years ago by
sup230
▴ 30
0
votes
2
replies
3.7k
views
Unable to install TCGAbiolinks
tcgabiolinks
updated 8.5 years ago by
shepherl
4.3k • written 8.5 years ago by
rf
• 0
0
votes
0
replies
1.1k
views
Error in mRNAselected_values_ordered[1:(lastelementTOP - 1)]
tcgabiolinks
TCGA
survival analysis
8.5 years ago
lqfuture
• 0
1
vote
1
reply
1.1k
views
TCGAbiolinks XML error
tcgabiolinks
updated 8.5 years ago by
lqfuture
• 0 • written 8.7 years ago by
Markus List
▴ 20
1
vote
2
replies
1.9k
views
Problem with TCGAbiolinks Enrichment analysis
tcgabiolinks
updated 8.7 years ago by
conico
• 0 • written 8.8 years ago by
david.tieri
▴ 10
0
votes
1
reply
2.6k
views
How to get treatment information with TCGAbiolinks?
gdcprepare
tcgabiolinks
treatment_type
R
data extraction
updated 8.7 years ago by
Dario Strbenac
★ 1.6k • written 8.7 years ago by
newbie
• 0
0
votes
2
replies
4.1k
views
Error using TCGAbiolinks "Error in fix.by(by.y, y) : 'by' must specify a uniquely valid column"
TCGA
tcgabiolinks
Error
8.7 years ago
f.geist
▴ 20
0
votes
0
replies
1.2k
views
TCGAbiolinks : TCGAdownload Error in curl
R
tcgabiolinks
tcgadownload
error
8.7 years ago
juniuskcc
• 0
1
vote
3
replies
3.7k
views
Data download via TCGAbiolinks
tcgabiolinks
updated 8.8 years ago by
ugandhar.ch1
• 0 • written 10.1 years ago by
maedakus
▴ 10
0
votes
3
replies
2.0k
views
TCGA controlled data
R
tcgabiolinks
gdcprepare
8.8 years ago
ugandhar.ch1
• 0
0
votes
0
replies
2.3k
views
TCGAbiolinks Installation Issues
tcgabiolinks
8.8 years ago
natalie_stephenson
• 0
4
votes
20
replies
4.4k
views
TCGAbiolinks Error in gene.location$ensembl_gene_id : $ operator is invalid for atomic vectors
tcgabiolinks
updated 8.9 years ago by
Mike Smith
★ 6.6k • written 8.9 years ago by
tangming2005
▴ 200
0
votes
2
replies
5.1k
views
Extract gene expression values from GDCprepare object
tcgabiolinks
tcga
tcgadownload
gdcprepare
gdc
updated 8.9 years ago by
Tiago Chedraoui Silva
▴ 260 • written 9.1 years ago by
enigmargs
• 0
1
vote
1
reply
1.3k
views
Problem with using GDC_queryMaf()
tcgabiolinks
maf
mutations
updated 9.0 years ago by
Tiago Chedraoui Silva
▴ 260 • written 9.0 years ago by
d r
▴ 150
0
votes
3
replies
2.5k
views
TCGAbiolinks maf files RAS mutation rate not matching maf files from firehose
TCGAbiolinks
9.0 years ago
tangming2005
▴ 200
1
vote
1
reply
1.9k
views
TCGAbiolinks query error
tcgabiolinks
9.1 years ago
gaiusjaugustus
• 0
0
votes
1
reply
1.1k
views
Meaning of subtype_methylation.Clusters , subtype_miRNA.Clusters, subtype_CN.Clusters
tcgabiolinks
updated 9.1 years ago by
Tiago Chedraoui Silva
▴ 260 • written 9.1 years ago by
vera
• 0
1
vote
2
replies
1.8k
views
Error in 'rownames' while using TCGAanalyze_Normalization in TCGA_biolinks
tcgabiolinks
error
9.2 years ago
salvl
▴ 10
0
votes
0
replies
804
views
Issues performing Analysis with TCGAbiolinks
tcgabiolinks
bioconductor
normalization
9.2 years ago
ammarsabir15
• 0
1
vote
2
replies
2.3k
views
Multiple problems with TCGAbiolinks 2.2.6
software error
tcgabiolinks
ubuntu
updated 9.2 years ago by
Tiago Chedraoui Silva
▴ 260 • written 9.2 years ago by
lmorrill
• 0
0
votes
1
reply
1.2k
views
Data type error
tcgabiolinks
updated 9.3 years ago by
Tiago Chedraoui Silva
▴ 260 • written 9.3 years ago by
mukhamadeeva.r
• 0
1
vote
1
reply
2.3k
views
Install problems on centos 7 of TCGAbiolinks
tcgabiolinks
centos7
updated 9.3 years ago by
Mike Smith
★ 6.6k • written 9.3 years ago by
jarod_v6@libero.it
▴ 40
0
votes
11
replies
4.6k
views
TCGAbiolinks GDCquery downloads a file that reads "message": "internal server error"
tcgabiolinks
gdc
9.3 years ago
jshelton
• 0
0
votes
3
replies
1.4k
views
GDCPrepare function returns a function
TCGAbiolinks
updated 9.3 years ago by
Tiago Chedraoui Silva
▴ 260 • written 9.3 years ago by
jvwong
• 0
2
votes
6
replies
5.2k
views
Getting a flat metadata table from the XML files in TCGA: is it feasible?
tcgabiolinks
updated 9.3 years ago by
Tiago Chedraoui Silva
▴ 260 • written 9.3 years ago by
Leonardo Collado Torres
★ 1.1k
3
votes
7
replies
6.8k
views
Getting the metadata for a RNA-seq sample from TCGA when you have the uuid
tcgabiolinks
tcgadownload
updated 9.3 years ago by
Tiago Chedraoui Silva
▴ 260 • written 9.3 years ago by
Leonardo Collado Torres
★ 1.1k
0
votes
8
replies
3.6k
views
TCGAbiolinks GDCprepare fails to connect to Biomart web server
tcgabiolinks
gdcprepare
9.4 years ago
sabarinath.chandrasekharan
▴ 10
0
votes
7
replies
2.6k
views
TCGAbiolinks not downloading the 450k data
tcgabiolinks
updated 9.4 years ago by
Tiago Chedraoui Silva
▴ 260 • written 9.4 years ago by
tangming2005
▴ 200
0
votes
1
reply
1.6k
views
Error during GDCprepare
tcgabiolinks
gdcprepare
updated 9.5 years ago by
Tiago C. Silva
▴ 270 • written 9.5 years ago by
Mariana Boroni
▴ 10
0
votes
1
reply
2.1k
views
Why the package readr can't be find?
software error
tcgabiolinks
readr
updated 9.5 years ago by
Gordon Smyth
53k • written 9.5 years ago by
fang291831388
• 0
1
vote
6
replies
3.1k
views
Errors in TCGAbiolinks
tcgabiolinks
updated 9.6 years ago by
Tiago Chedraoui Silva
▴ 260 • written 9.6 years ago by
sabarinath.chandrasekharan
▴ 10
0
votes
3
replies
6.1k
views
Problem in downloading data via TCGAbiolinks
tcgabiolinks
tcgadownload
updated 4.8 years ago by
H. Z. Amini
▴ 10 • written 9.6 years ago by
sabarinath.chandrasekharan
▴ 10
0
votes
2
replies
1.8k
views
Problems running TCGAbiolinks
tcgabiolinks
updated 9.6 years ago by
Tiago C. Silva
▴ 270 • written 9.6 years ago by
wangzx
• 0
1
vote
2
replies
2.1k
views
TCGAbiolinks 403 Forbidden Error
bug
issue
tcgabiolinks
updated 9.6 years ago by
Tiago C. Silva
▴ 270 • written 9.7 years ago by
Marcel Ramos
700
0
votes
4
replies
3.3k
views
TCGA biolinks data download
tcgabiolinks
updated 9.6 years ago by
Tiago C. Silva
▴ 270 • written 9.7 years ago by
maedakus
▴ 10
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