Showing : tcgabiolinks • reset
0
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834
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TCGAvisualize_EAbarplot error in TCGAbiolinks
tcgabiolinks tcgavisualize_EAbarplot differential expression
7.8 years ago fawazfebin ▴ 60
0
votes
0
replies
1.3k
views
Error in move(i, file.path(path, i)) : I could not find the file: 95a5d709-7454-4f76-84b0-a505c32baeb5 ; GDCdownload error
tcgabiolinks gdcdownload tcga-brca
7.9 years ago fawazfebin ▴ 60
3
votes
5
replies
3.1k
views
GDCdownload error in TCGAbiolinks: Invalid zip name argument
tcgabiolinks gdcdownload unzip
updated 7.9 years ago by ▴ 260 • written 7.9 years ago by ▴ 60
7
votes
6
replies
3.4k
views
Analysis using TCGAbiolinks
tcgabiolinks triple negative breast cancer data sets
updated 7.9 years ago by ▴ 50 • written 7.9 years ago by ▴ 60
0
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0
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1.2k
views
Reasoning for illegal operation
tcgabiolinks illegaloperation gdcprepare
7.9 years ago lisa8191 • 0
2
votes
5
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2.4k
views
Error when prepare the TCGAdata
tcgabiolinks dna methylation
updated 7.9 years ago by 700 • written 7.9 years ago by • 0
6
votes
11
replies
4.2k
views
Error and weird result of TCGAanalyze_Normalization function using the R package TCGAbiolinks for normalization of raw HTSeq counts
tcgabiolinks rnaseq normalization EDASeq
updated 8.0 years ago by ▴ 50 • written 8.0 years ago by ▴ 840
1
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7
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3.0k
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Cannot retrieve projects from TCGA using getGDCprojects function
tcgabiolinks TCGA software error
8.0 years ago jacorvar ▴ 40
1
vote
5
replies
1.7k
views
update TCGAbiolinks to version 3.6 and GDCquery doesn't work
software error tcgabiolinks
updated 8.0 years ago by ▴ 40 • written 8.0 years ago by • 0
1
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2
replies
2.1k
views
TCGABiolinks::GDCquery() suddenly sending back unknown error
software error error tcgabiolinks GDCquery
updated 8.0 years ago by ▴ 40 • written 8.0 years ago by ▴ 10
2
votes
2
replies
3.0k
views
TCGAbiolinks Download ERROR
TCGA tcgabiolinks download error
updated 8.0 years ago by ▴ 40 • written 8.0 years ago by ▴ 10
4
votes
2
replies
3.0k
views
TCGA-biolink: GRCH38 RNA-seq, normalized counts matrix, Converting ensemble gene name into common gene name
tcgabiolinks grch38 annotation
updated 8.0 years ago by ▴ 270 • written 8.1 years ago by • 0
6
votes
3
replies
3.1k
views
TCGAbiolinks GDCquery Error: Parsing problems
tcgabiolinks
updated 8.0 years ago by ▴ 50 • written 8.1 years ago by ▴ 100
2
votes
11
replies
4.7k
views
package or namespace load failed for TCGAbiolinks
tcgabiolinks
updated 8.1 years ago by ▴ 200 • written 8.2 years ago by • 0
0
votes
1
reply
1.7k
views
Error downloading the package
tcgabiolinks TCGA DOWNLOAD
updated 8.1 years ago by 68k • written 8.1 years ago by ▴ 30
0
votes
2
replies
3.4k
views
Unable to install TCGAbiolinks
tcgabiolinks
updated 8.2 years ago by 4.2k • written 8.2 years ago by • 0
0
votes
0
replies
1.1k
views
Error in mRNAselected_values_ordered[1:(lastelementTOP - 1)]
tcgabiolinks TCGA survival analysis
8.2 years ago lqfuture • 0
1
vote
1
reply
1.0k
views
TCGAbiolinks XML error
tcgabiolinks
updated 8.2 years ago by • 0 • written 8.4 years ago by ▴ 20
1
vote
2
replies
1.8k
views
Problem with TCGAbiolinks Enrichment analysis
tcgabiolinks
updated 8.4 years ago by • 0 • written 8.4 years ago by ▴ 10
0
votes
1
reply
2.2k
views
How to get treatment information with TCGAbiolinks?
gdcprepare tcgabiolinks treatment_type R data extraction
updated 8.4 years ago by ★ 1.6k • written 8.4 years ago by • 0
0
votes
2
replies
4.0k
views
Error using TCGAbiolinks "Error in fix.by(by.y, y) : 'by' must specify a uniquely valid column"
TCGA tcgabiolinks Error
8.4 years ago f.geist ▴ 20
0
votes
0
replies
1.1k
views
TCGAbiolinks : TCGAdownload Error in curl
R tcgabiolinks tcgadownload error
8.4 years ago juniuskcc • 0
1
vote
3
replies
3.3k
views
Data download via TCGAbiolinks
tcgabiolinks
updated 8.5 years ago by • 0 • written 9.8 years ago by ▴ 10
0
votes
3
replies
1.8k
views
TCGA controlled data
R tcgabiolinks gdcprepare
8.5 years ago ugandhar.ch1 • 0
0
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0
replies
2.2k
views
TCGAbiolinks Installation Issues
tcgabiolinks
8.5 years ago natalie_stephenson • 0
4
votes
20
replies
4.1k
views
TCGAbiolinks Error in gene.location$ensembl_gene_id : $ operator is invalid for atomic vectors
tcgabiolinks
updated 8.6 years ago by ★ 6.6k • written 8.6 years ago by ▴ 200
0
votes
2
replies
4.5k
views
Extract gene expression values from GDCprepare object
tcgabiolinks tcga tcgadownload gdcprepare gdc
updated 8.6 years ago by ▴ 260 • written 8.8 years ago by • 0
1
vote
1
reply
1.3k
views
Problem with using GDC_queryMaf()
tcgabiolinks maf mutations
updated 8.6 years ago by ▴ 260 • written 8.7 years ago by ▴ 150
0
votes
3
replies
2.4k
views
TCGAbiolinks maf files RAS mutation rate not matching maf files from firehose
TCGAbiolinks
8.7 years ago tangming2005 ▴ 200
1
vote
1
reply
1.8k
views
TCGAbiolinks query error
tcgabiolinks
8.8 years ago gaiusjaugustus • 0
0
votes
1
reply
1.1k
views
Meaning of subtype_methylation.Clusters , subtype_miRNA.Clusters, subtype_CN.Clusters
tcgabiolinks
updated 8.8 years ago by ▴ 260 • written 8.8 years ago by • 0
1
vote
2
replies
1.7k
views
Error in 'rownames' while using TCGAanalyze_Normalization in TCGA_biolinks
tcgabiolinks error
8.9 years ago salvl ▴ 10
0
votes
0
replies
760
views
Issues performing Analysis with TCGAbiolinks
tcgabiolinks bioconductor normalization
8.9 years ago ammarsabir15 • 0
1
vote
2
replies
2.1k
views
Multiple problems with TCGAbiolinks 2.2.6
software error tcgabiolinks ubuntu
updated 8.9 years ago by ▴ 260 • written 8.9 years ago by • 0
0
votes
1
reply
1.2k
views
Data type error
tcgabiolinks
updated 9.0 years ago by ▴ 260 • written 9.0 years ago by • 0
1
vote
1
reply
2.3k
views
Install problems on centos 7 of TCGAbiolinks
tcgabiolinks centos7
updated 9.0 years ago by ★ 6.6k • written 9.0 years ago by ▴ 40
0
votes
11
replies
4.2k
views
TCGAbiolinks GDCquery downloads a file that reads "message": "internal server error"
tcgabiolinks gdc
9.0 years ago jshelton • 0
0
votes
3
replies
1.3k
views
GDCPrepare function returns a function
TCGAbiolinks
updated 9.0 years ago by ▴ 260 • written 9.0 years ago by • 0
2
votes
6
replies
4.6k
views
Getting a flat metadata table from the XML files in TCGA: is it feasible?
tcgabiolinks
updated 9.0 years ago by ▴ 260 • written 9.0 years ago by ★ 1.1k
3
votes
7
replies
5.8k
views
Getting the metadata for a RNA-seq sample from TCGA when you have the uuid
tcgabiolinks tcgadownload
updated 9.0 years ago by ▴ 260 • written 9.0 years ago by ★ 1.1k
0
votes
8
replies
3.4k
views
TCGAbiolinks GDCprepare fails to connect to Biomart web server
tcgabiolinks gdcprepare
9.1 years ago sabarinath.chandrasekharan ▴ 10
0
votes
7
replies
2.4k
views
TCGAbiolinks not downloading the 450k data
tcgabiolinks
updated 9.1 years ago by ▴ 260 • written 9.1 years ago by ▴ 200
0
votes
1
reply
1.5k
views
Error during GDCprepare
tcgabiolinks gdcprepare
updated 9.2 years ago by ▴ 270 • written 9.2 years ago by ▴ 10
0
votes
1
reply
2.0k
views
Why the package readr can't be find?
software error tcgabiolinks readr
updated 9.2 years ago by 53k • written 9.2 years ago by • 0
1
vote
6
replies
2.7k
views
Errors in TCGAbiolinks
tcgabiolinks
updated 9.3 years ago by ▴ 260 • written 9.3 years ago by ▴ 10
0
votes
3
replies
5.4k
views
Problem in downloading data via TCGAbiolinks
tcgabiolinks tcgadownload
updated 4.4 years ago by ▴ 10 • written 9.3 years ago by ▴ 10
0
votes
2
replies
1.7k
views
Problems running TCGAbiolinks
tcgabiolinks
updated 9.3 years ago by ▴ 270 • written 9.3 years ago by • 0
1
vote
2
replies
2.0k
views
TCGAbiolinks 403 Forbidden Error
bug issue tcgabiolinks
updated 9.3 years ago by ▴ 270 • written 9.4 years ago by 700
0
votes
4
replies
3.0k
views
TCGA biolinks data download
tcgabiolinks
updated 9.3 years ago by ▴ 270 • written 9.4 years ago by ▴ 10
1
vote
2
replies
1.9k
views
TCGAbiolinks download and read data error
TCGAbiolinks
updated 9.3 years ago by ▴ 270 • written 9.4 years ago by • 0
165 results • Page 3 of 4
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Comment: What R/Bioconductor tools would you recommend for the analysis of sncRNA, specif by Matthew Thornton ▴ 380
WOW! Thank you so much for the information. I will do this.
Comment: "Watched Tags" are being erased rather than updated by RalphSavage99 • 0
Thanks for sharing https://github.com/Bioconductor/support.bioconductor.org/issues/112
Answer: Add additional maintainer for MOFA2 by shepherl 4.2k
These requests are best on the bioc-devel @ r-project.org or a request to maintainer @ bioconductor.org -- We would ideally need the curre…
Answer: After running samtools, the featureCounts command crashed. by Kevin Blighe ★ 4.0k
Hi Rui Tang, The "buffer overflow detected" error in featureCounts usually stems from a corrupted or malformed GTF file, often due to tr…
Answer: Problem with the TMB plot by Kevin Blighe ★ 4.0k
Hi, The linear TMB plot with no clustering suggests your variant calls may lack sample-specific discrimination, likely due to filtering ap…
Votes
Answer: What R/Bioconductor tools would you recommend for the analysis of sncRNA, specif
Using edgeR or DESeq2 to analyze allele-specific expression?
Answer: DESeq2 design for haplotype MPRA
Answer: Failure to download resources (MeSHDb) from AnnotationHub
Answer: Failure to download resources (MeSHDb) from AnnotationHub
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