Showing : visualization • reset
0
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6
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2.9k
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Gviz::plotTracks for BiomartGeneRegionTrack() produces empty plots
gviz visualization
9.3 years ago Asta Laiho ▴ 120
0
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4
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1.3k
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Pathview published in Bioinformatics
Visualization pathview Visualization pathview
10.9 years ago Luo Weijun ★ 1.6k
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5
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2.6k
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Gene Symbol with Pathview
pathview bioconductor kegg visualization
updated 8.6 years ago by ★ 1.6k • written 8.6 years ago by • 0
0
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5
replies
1.9k
views
Question regarding cellhts2 output
Normalization Visualization PROcess cellHTS2 ASSIGN Normalization Visualization PROcess
11.1 years ago maziz@tgen.org ▴ 70
0
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6
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3.3k
views
Fwd: WGCNA: labeledHeatmap and verboseScatterplot correlations and p-values are not the same
Visualization Visualization
9.8 years ago Peter Langfelder ★ 3.0k
0
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2
replies
906
views
ANN: Bioconductor short course June 1-3 in Seattle
Preprocessing Visualization Cancer Preprocessing Visualization Cancer
19.1 years ago Seth Falcon ★ 7.4k
4
votes
6
replies
1.4k
views
How to best visualize multi-level transcriptomics experiment data?
ggplot2 Transcriptomics Visualization R limma
24 months ago • updated 23 months ago mohammedtoufiq91 ▴ 10
0
votes
4
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1.4k
views
rtracklayer can't access hg38 on UCSC?
rtracklayer Visualization
updated 2.5 years ago by 16k • written 2.5 years ago by • 0
3
votes
5
replies
2.3k
views
Explanation of warning output of pathview regarding visualization of a KEGG pathway with Graphviz format
pathview clusterProfiler KEGGpath visualization Graphviz
updated 8.5 years ago by ★ 1.6k • written 8.5 years ago by ▴ 830
0
votes
7
replies
2.2k
views
Bioconductor 2.6 is released
Sequencing Microarray Visualization Infrastructure PROcess beadarray keggorthology eisa
updated 7.7 years ago by • 0 • written 14.1 years ago by ★ 1.6k
0
votes
2
replies
2.6k
views
DESeq2 error
Visualization Clustering DESeq2 Visualization Clustering DESeq2
10.3 years ago Michael Love 42k
0
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2
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1.4k
views
proposed: a bridge between R and Cytoscape
Visualization Network graph Visualization Network graph
updated 13.9 years ago by ★ 13k • written 13.9 years ago by ★ 1.1k
2
votes
4
replies
1.6k
views
chimeraviz - import own fusion file for visualization
visualization chimeraviz
updated 2.8 years ago by • 0 • written 6.8 years ago by ▴ 10
0
votes
2
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2.1k
views
What RNA-Seq expression estimates to use for plotting to show voom/limma Differential expression
Visualization graph limma Visualization graph limma
updated 10.3 years ago by 50k • written 10.3 years ago by ▴ 30
0
votes
3
replies
2.3k
views
RNAseq read coverage plot: What tool?
rnaseq visualization plotcoveragehist
updated 7.0 years ago by ★ 1.3k • written 7.0 years ago by ▴ 130
0
votes
2
replies
1.4k
views
DMRcate DMR.plot Turn Off Group Means
dmrcate visualization
updated 7.3 years ago by ▴ 180 • written 7.3 years ago by • 0
0
votes
1
reply
1.3k
views
Survey on interactive visualization and Bioconductor
visualization epivizr
7.9 years ago Hector Corrada Bravo ▴ 60
2
votes
2
replies
4.3k
views
How can I visualize Gene Set Enrichment Results from gseGo fun. (clusterProfiler)?
ggplot2 clusterprofiler visualization gseGo
7.1 years ago • updated 3.5 years ago tcalvo ▴ 90
1
vote
3
replies
1.9k
views
Visualizing gene counts and variance stabilization
deseq2 rnaseq variancestabilizingtransformation visualization
updated 8.9 years ago by 42k • written 8.9 years ago by ▴ 40
0
votes
1
reply
1.0k
views
status of visnab
Visualization ggbio Gviz Visualization ggbio Gviz
updated 11.0 years ago by ▴ 420 • written 11.0 years ago by ▴ 410
1
vote
1
reply
1.5k
views
Visualizing Structural variants
visualization SV
updated 9.0 years ago by 6.7k • written 9.0 years ago by ▴ 190
1
vote
2
replies
2.7k
views
gene expression visualization: lineplot with ggplot2
ggplot2 lineplot visualization
updated 9.0 years ago by ▴ 180 • written 9.0 years ago by ▴ 130
0
votes
1
reply
2.0k
views
Entrez Gene ID to Probe Set Name
aCGH Sequencing miRNA Microarray Annotation Normalization GO Preprocessing Visualization
updated 15.6 years ago by ★ 7.2k • written 15.6 years ago by ▴ 300
2
votes
2
replies
1.1k
views
What can be done to separate the healthy and patient samples in PCA plot and Distance matrix
deseq2 PCAplot Visualization
updated 5.3 years ago by 42k • written 5.3 years ago by • 0
0
votes
2
replies
3.5k
views
Mapping gene IDs to gene symbol of KEGG pathways with "Pathview"
Pathview KEGG annotation gene symbol visualization
updated 8.9 years ago by ★ 1.6k • written 8.9 years ago by ▴ 130
0
votes
1
reply
723
views
comparative genomics
Visualization Visualization
updated 18.9 years ago by 21k • written 18.9 years ago by ▴ 30
1
vote
1
reply
2.3k
views
Using DESeq2: experimental design and extracting results
Visualization DESeq DESeq2 Visualization DESeq DESeq2
updated 9.8 years ago by 42k • written 9.8 years ago by ▴ 60
0
votes
1
reply
1.0k
views
Several questions goCluster and GOstats...
Annotation GO Visualization Yeast goCluster Annotation GO Visualization Yeast goCluster
updated 18.7 years ago by ▴ 60 • written 18.7 years ago by ▴ 140
2
votes
1
reply
3.5k
views
Heatmap function
Visualization Visualization
updated 20.5 years ago by ▴ 210 • written 20.5 years ago by ▴ 150
0
votes
1
reply
1.5k
views
ChIPseeker gene body plot
chipseeker visualization
updated 7.9 years ago by ★ 1.2k • written 7.9 years ago by ▴ 40
2
votes
1
reply
2.1k
views
ggbio: examples of overlaying multiple assay datasets
ggbio visualization ggbio
updated 9.6 years ago by ▴ 30 • written 9.6 years ago by ▴ 190
0
votes
1
reply
3.0k
views
GAGE/Pathview RNA-Seq Data Pathway and Gene-set Analysis Workflows
GO Visualization edgeR gage GO Visualization edgeR gage
10.6 years ago Luo Weijun ★ 1.6k
0
votes
1
reply
711
views
MA plots and assumptions
Normalization Visualization Normalization Visualization
updated 11.0 years ago by ★ 13k • written 11.0 years ago by ▴ 360
0
votes
1
reply
8.3k
views
Using DESeq normalized gene count to replace FPKM?
Visualization DESeq Visualization DESeq
updated 10.8 years ago by ★ 3.7k • written 10.8 years ago by ▴ 10
0
votes
2
replies
2.5k
views
Questions about multi-factor contrast setting in DESeq2
GO Visualization Clustering limma edgeR DESeq2 GO Visualization Clustering limma edgeR
updated 10.2 years ago by ▴ 380 • written 10.2 years ago by 42k
0
votes
2
replies
1.6k
views
Visualizing GOstats HyperGTest results
GO Visualization GOstats GO Visualization GOstats
updated 16.3 years ago by 65k • written 16.3 years ago by ▴ 600
0
votes
1
reply
1.8k
views
DEseq for sample clustering
Visualization Clustering DESeq Visualization Clustering DESeq
updated 12.5 years ago by ★ 13k • written 12.5 years ago by ★ 13k
0
votes
5
replies
3.5k
views
Adjacency to network using R
Visualization Network convert Visualization Network convert
updated 12.1 years ago by ★ 4.2k • written 12.1 years ago by ▴ 120
0
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5
replies
1.6k
views
Visualization of alignments with mismatch bases
SNP Coverage Alignment Visualization ggbio SNP Coverage Alignment Visualization ggbio
updated 11.2 years ago by ▴ 420 • written 11.2 years ago by ★ 11k
0
votes
1
reply
786
views
cosmo package - Tk requirement?
Visualization cosmo Visualization cosmo
updated 17.3 years ago by ▴ 30 • written 17.4 years ago by ▴ 10
0
votes
1
reply
2.4k
views
Visualising the GO structure (RNA-seq) using topGO and goseq
Microarray GO Visualization Microarray GO Visualization
updated 13.1 years ago by ★ 7.2k • written 13.1 years ago by ▴ 140
0
votes
1
reply
2.2k
views
Bioconductor Digest, Vol 120, Issue 12
Microarray qPCR Coverage Annotation Pathways Visualization Cancer Breast Organism affy
11.2 years ago Matthew Thornton ▴ 350
0
votes
1
reply
848
views
Visualization of multiple alignments in bioconductor
Genetics Visualization Genetics Visualization
updated 15.8 years ago by 25k • written 15.8 years ago by ▴ 10
0
votes
1
reply
1.1k
views
Color in the lefs of a dendrogram?
Visualization Clustering Visualization Clustering
updated 19.5 years ago by ▴ 330 • written 19.5 years ago by ▴ 270
0
votes
4
replies
8.9k
views
Agilent 2-color Microarray data analysis tutorial
Microarray Visualization Clustering Microarray Visualization Clustering
updated 14.3 years ago by 25k • written 14.3 years ago by ▴ 140
0
votes
3
replies
1.6k
views
Bioconductor 2.3 is released
aCGH Sequencing miRNA Microarray Visualization Bayesian Classification Survival Yeast LPE
15.6 years ago • updated 15.5 years ago Patrick Aboyoun ★ 1.6k
0
votes
1
reply
1.4k
views
2 Courses Near You - (1) Introduction to R/S+ programming: Microarrays Analysis and Bioconductor, (2) R/Splus Fundamentals and Programming Techniques
Visualization Clustering Visualization Clustering
updated 17.9 years ago by ▴ 130 • written 17.9 years ago by ▴ 570
0
votes
2
replies
1.5k
views
FlowViz graphics problems
Microarray Visualization graph flowCore flowViz Microarray Visualization graph flowCore
updated 14.9 years ago by ▴ 340 • written 14.9 years ago by ▴ 20
0
votes
1
reply
1.4k
views
Talk & Poster - Final Call - qPCR 2009 Event
SNP qPCR Normalization Visualization Regression Cancer probe PROcess microRNA SNP qPCR
15.4 years ago qPCR Platform - the reference in real-t… ▴ 170
0
votes
1
reply
1.1k
views
LIMMA, SAM & clustering
Visualization Clustering limma Visualization Clustering limma
updated 18.3 years ago by 65k • written 18.3 years ago by ▴ 100
50 results • Page 1 of 1
Recent ...
Replies
Comment: How to use bootRanges to bootstrap small RNA loci (nullranges package) by Poonam • 0
That ll be helpful. Thank you.
Comment: Log-cpm values from limma by Shaimaa Gamal • 0
I have performed RUVg correction and extracted W, factors of unwanted variation. According to limma guide, > In the limma approach to RNA…
Comment: DSS CpG coverage threshold by j.gilbert • 0
Might be a bit late for the original poster :') but in case anyone else is wondering, the DSS user guide says: *Q: Do I need to filter out…
Comment: How to use bootRanges to bootstrap small RNA loci (nullranges package) by Michael Love 42k
Segmentation is of the whole genome, I'll write some code for doing this later today.
Comment: How to use bootRanges to bootstrap small RNA loci (nullranges package) by Michael Love 42k
I'll take a look later. For next time, I've edited your post by enclosing the code in triple backticks (on their own link). This properly …
Votes
Bioconductor 3.19 is Released!
A: Volcanoplot with limma - RAW P-values or Adj.P-Values
Answer: Mac ARM64 build report for BioC 3.19 from 'kjohnson3' reporting ERROR which it
Comment: Mac ARM64 build report for BioC 3.19 from 'kjohnson3' reporting ERROR which it
Answer: minfi latest update for EPIC V2 chip
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