Showing : wgcna • reset
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Multiple way network preservation
wgcna
2.6 years ago madzayasodara • 0
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916
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WGCNA TOM file empty
WGCNA TOM
2.6 years ago gianni.drm • 0
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1.5k
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WGCNA Heatmap and Export to Cytoscape Not Working
Cytoscape Heatmap heatmaps WGCNA
2.6 years ago gianni.drm • 0
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1
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1.6k
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WGCNA soft thresholding suggesting a power of 1
independence thresholding WGCNA connectivity scale
updated 18 months ago by ▴ 740 • written 2.6 years ago by • 0
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1
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814
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In WGCNA which is the matrix on which the eigen decomposition is run to get the module eigen gene
WGCNA
updated 2.6 years ago by ▴ 50 • written 2.6 years ago by • 0
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961
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Does verboseScatterplot in WGCNA package allow for highlighting a subset of genes
WGCNA
2.6 years ago S • 0
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947
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Problems running WGCNA
WGCNA
2.7 years ago S • 0
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761
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coexpression networks
WGCNA igraph
2.8 years ago María José • 0
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876
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A question about GWENA R/Bioconductor package
proteomics GWENA Proteomics WGCNA
2.8 years ago Abdullah • 0
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0
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1.4k
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WGCNA: minModuleSize is not responding correctly
Network minModuleSize WGCNA wgcna
2.8 years ago • updated 11 months ago bioinformaticssrm2011 • 0
2
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1
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1.2k
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WGCNA: weird issue of module with a single gene
network co-expression WGCNA
updated 3.0 years ago by ▴ 50 • written 3.0 years ago by ▴ 10
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1
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1.5k
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WGCNA - Network construction and module detection
gene Clustering wgcna flashclust
updated 3.0 years ago by ▴ 50 • written 3.0 years ago by ▴ 20
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804
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MM-GS plot doesn't show any negative correlation
wgcna
3.1 years ago shubhankar.pawar • 0
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1
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1.7k
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WGCNA Export Eigengene Adjacency/Correlation values export
WGCNA
updated 3.1 years ago by • 0 • written 3.1 years ago by • 0
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0
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950
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ARACNe Sample Size
grndata GRN ARACNE WGCNA
3.2 years ago Harrsha • 0
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805
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Enrichment in genomic regions
Enrichment clusterPro WGCNA
3.2 years ago María José • 0
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0
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948
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How to create consensus network from SampledBlockwiseModules in WGCNA?
NetworkInference SampledBlockWiseModules WGCNA
3.2 years ago as8020 • 0
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585
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WGCNA consensusMEDdissimilrity
WGCNA
3.3 years ago María José • 0
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3
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2.5k
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WGCNA error
WGCNA
3.3 years ago ayabalbaa1990 • 0
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1.3k
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The gene clusters from the WGCNA dendrogram output are not in order
Clustering WGCNA
3.3 years ago chiwut.wong • 0
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1.0k
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FILTER GENES FOR WGCNA
WGCNA
3.4 years ago María José • 0
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1.1k
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Only 1 gene/ feature is present in module after WGCNA analysis
RNASeq Clustering cluster WGCNA
3.4 years ago chiwut.wong • 0
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2
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2.1k
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WGCNA: Picking soft threshold before and after batch effect correction for Microbial data
wgcna WGCNA
written 3.4 years ago by • 0
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812
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WGCNA analsyis: Cytoscape visualization (Error in recalculating topological overlap)
analsyis WGCNA
3.4 years ago Amazing570 • 0
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0
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1.0k
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WGCNA with large Methylation matrix
wgcna R WGCNA Methylation
3.6 years ago Lorenzo • 0
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1
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972
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adjacency matrix in WGCNA returns NA
Coexpressionnetwork WGCNA
written 3.6 years ago by • 0
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1
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1.8k
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WGCNA: Obtaining a consensus network from sampledBlockwiseModules function output
Network consensus sampledBlockwiseModules resampling WGCNA
updated 3.6 years ago by ★ 3.0k • written 3.7 years ago by ▴ 30
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1
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1.6k
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WGCNA Preservation error
preservation WGCNA
updated 19 months ago by • 0 • written 3.7 years ago by • 0
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1
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1.5k
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Outlier Removal WGCNA
RNASeq WGCNA
updated 3.7 years ago by 6.7k • written 3.7 years ago by ▴ 10
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1.2k
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Removing low count/low variance genes
WGCNA
3.7 years ago Aya • 0
2
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9
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6.0k
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Deseq2 normalization for WGCNA
RNASeq Deseq2 DESeq2 WGCNA
updated 3.3 years ago by 43k • written 3.7 years ago by ▴ 10
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2.1k
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How to choose singed or unsigned network in step-by-step WGCNA
WGCNA
3.7 years ago synat.keam • 0
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1
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1.4k
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Trouble with gene dendrogram
Network RNASeq WGCNA
updated 2.6 years ago by • 0 • written 3.8 years ago by ▴ 10
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3
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2.3k
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Problem getting soft threshold power using WGCNA for RNA-seq data
RNASeq WGCNA
3.8 years ago jms2520 ▴ 10
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1
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1.6k
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Summarising WGCNA data with modules and their corresponding gene ID and statistics
RNASeq WGCNA
3.8 years ago synat.keam • 0
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963
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WGCNA Consensus Module Sign Question
wgcna
3.9 years ago erik.burchard • 0
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2
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1.3k
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WGCA tutorial related question
WGCNA
3.9 years ago wes • 0
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0
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1.2k
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WGCNA error during network construction
WGCNA Network R
3.9 years ago gitanjali • 0
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1
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2.0k
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pre-proccessing of TCGA data for WGCNA
TCGAbiolinks WGCNA
updated 4.0 years ago by 43k • written 4.0 years ago by • 0
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0
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873
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WGCNA out of memory
wgcna RNASeq
4.1 years ago zli1 • 0
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2
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2.9k
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WGCNA adjust p value
WGCNA
written 4.1 years ago by ▴ 40
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788
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Working with Binary Categorical Data using WGCNA and Unsigned Networks
WGCNA
4.2 years ago schum266 ▴ 10
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1
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1.7k
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Determining number of genes in each module based on color in WGCNA package
WGCNA
4.2 years ago schum266 ▴ 10
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1
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962
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Query regarding WGCNA module formation
WGCNA RNAseq RNASeqData
updated 4.3 years ago by ▴ 760 • written 4.3 years ago by • 0
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1
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842
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Query regarding WGCNA module
WGCNA
updated 4.3 years ago by ▴ 50 • written 4.3 years ago by • 0
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1
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2.6k
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Removing batch effect by sva or combat and subsequent correlation analysis by WGCNA
WGCNA impute sva
updated 4.3 years ago by ▴ 60 • written 4.3 years ago by • 0
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1
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1.5k
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No genes with Module Membership > 0.8
wgcna WGCNA hubgenes
updated 4.4 years ago by ▴ 70 • written 4.6 years ago by ▴ 10
10
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1
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5.2k
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WGCNA: Module preservation vs consensus analysis
WGCNA wgcna
updated 4.4 years ago by ▴ 70 • written 4.5 years ago by ▴ 60
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1.3k
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Consensus wgcna soft threshold for each data
Transcriptomics WGCNA wgcna
4.5 years ago 2323982403 ▴ 60
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0
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1.2k
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Sample size on Differential Network Analysis
coexpression WGCNA
4.5 years ago Hanna ▴ 10
335 results • Page 2 of 7
Recent ...
Replies
Comment: WGCNA analysis on RNAseq and proteoimcs data by sum31278 • 0
Hi sagigordon, Can you share how you performed WGCNA analysis for proteomics data? Thanks
Comment: European Bioconductor Conference 2023 planning by inadequate.peacock.iiag • 0
I once faced a dilemma similar to this when coordinating a smaller local event; despite initial hesitation, I learned invaluable skills and…
Comment: ROAST compare results with complex design by Gordon Smyth 52k
It's also worth pointing out that the syntax for `camera` and `mroast` is the same, so I wonder how OP did the earlier `camera` analysis.
Answer: ROAST compare results with complex design by James W. MacDonald 68k
You are specifying that the last column of your design should be used as the contrast. You should instead use `contrast[,1]`, which will us…
Comment: How to account for solvent controls in DESeq2 when comparing follicular vs lutea by James W. MacDonald 68k
Yes. You can infer that by figuring out what each coefficient measures. Here is your design matrix: ``` > targets ID Name phase G…
Votes
Answer: ROAST compare results with complex design
How to account for solvent controls in DESeq2 when comparing follicular vs luteal phase?
Answer: How to account for solvent controls in DESeq2 when comparing follicular vs lutea
Answer: How to account for solvent controls in DESeq2 when comparing follicular vs lutea
Comment: Using DESeq2 on single cell RNA Seq data of same cell type but different conditi
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