Showing : wgcna • reset
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915
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How to draw module significance barplot?
module_significance barplot WGCNA
2.8 years ago Sooni ▴ 10
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886
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Multiple way network preservation
wgcna
2.9 years ago madzayasodara • 0
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991
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WGCNA TOM file empty
WGCNA TOM
2.9 years ago gianni.drm • 0
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1.6k
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WGCNA Heatmap and Export to Cytoscape Not Working
Cytoscape Heatmap heatmaps WGCNA
2.9 years ago gianni.drm • 0
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1
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1.7k
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WGCNA soft thresholding suggesting a power of 1
independence thresholding WGCNA connectivity scale
updated 22 months ago by ▴ 740 • written 2.9 years ago by • 0
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1
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873
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In WGCNA which is the matrix on which the eigen decomposition is run to get the module eigen gene
WGCNA
updated 2.9 years ago by ▴ 50 • written 2.9 years ago by • 0
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1.0k
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Does verboseScatterplot in WGCNA package allow for highlighting a subset of genes
WGCNA
2.9 years ago S • 0
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0
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990
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Problems running WGCNA
WGCNA
3.0 years ago S • 0
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0
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813
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coexpression networks
WGCNA igraph
3.1 years ago María José • 0
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0
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938
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A question about GWENA R/Bioconductor package
proteomics GWENA Proteomics WGCNA
3.1 years ago Abdullah • 0
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0
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1.5k
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WGCNA: minModuleSize is not responding correctly
Network minModuleSize WGCNA wgcna
3.1 years ago • updated 15 months ago bioinformaticssrm2011 • 0
2
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1
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1.3k
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WGCNA: weird issue of module with a single gene
network co-expression WGCNA
updated 3.3 years ago by ▴ 50 • written 3.3 years ago by ▴ 10
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1
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1.7k
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WGCNA - Network construction and module detection
gene Clustering wgcna flashclust
updated 3.3 years ago by ▴ 50 • written 3.3 years ago by ▴ 20
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0
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841
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MM-GS plot doesn't show any negative correlation
wgcna
3.4 years ago shubhankar.pawar • 0
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1
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1.8k
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WGCNA Export Eigengene Adjacency/Correlation values export
WGCNA
updated 3.4 years ago by • 0 • written 3.5 years ago by • 0
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0
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1.0k
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ARACNe Sample Size
grndata GRN ARACNE WGCNA
3.5 years ago Harrsha • 0
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0
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864
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Enrichment in genomic regions
Enrichment clusterPro WGCNA
3.5 years ago María José • 0
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0
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1.1k
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How to create consensus network from SampledBlockwiseModules in WGCNA?
NetworkInference SampledBlockWiseModules WGCNA
3.5 years ago as8020 • 0
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0
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614
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WGCNA consensusMEDdissimilrity
WGCNA
3.6 years ago María José • 0
1
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3
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2.6k
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WGCNA error
WGCNA
3.6 years ago ayabalbaa1990 • 0
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0
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1.4k
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The gene clusters from the WGCNA dendrogram output are not in order
Clustering WGCNA
3.7 years ago chiwut.wong • 0
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0
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1.1k
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FILTER GENES FOR WGCNA
WGCNA
3.7 years ago María José • 0
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0
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1.3k
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Only 1 gene/ feature is present in module after WGCNA analysis
RNASeq Clustering cluster WGCNA
3.7 years ago chiwut.wong • 0
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2
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2.2k
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WGCNA: Picking soft threshold before and after batch effect correction for Microbial data
wgcna WGCNA
written 3.7 years ago by • 0
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0
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859
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WGCNA analsyis: Cytoscape visualization (Error in recalculating topological overlap)
analsyis WGCNA
3.7 years ago Amazing570 • 0
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0
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1.1k
views
WGCNA with large Methylation matrix
wgcna R WGCNA Methylation
3.9 years ago Lorenzo • 0
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1
reply
1.0k
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adjacency matrix in WGCNA returns NA
Coexpressionnetwork WGCNA
written 3.9 years ago by • 0
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1
reply
2.0k
views
WGCNA: Obtaining a consensus network from sampledBlockwiseModules function output
Network consensus sampledBlockwiseModules resampling WGCNA
updated 3.9 years ago by ★ 3.0k • written 4.0 years ago by ▴ 30
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1
reply
1.6k
views
WGCNA Preservation error
preservation WGCNA
updated 23 months ago by • 0 • written 4.0 years ago by • 0
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1
reply
1.6k
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Outlier Removal WGCNA
RNASeq WGCNA
updated 4.0 years ago by 6.7k • written 4.0 years ago by ▴ 10
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0
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1.3k
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Removing low count/low variance genes
WGCNA
4.0 years ago Aya • 0
2
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9
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6.3k
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Deseq2 normalization for WGCNA
RNASeq Deseq2 DESeq2 WGCNA
updated 3.7 years ago by 43k • written 4.0 years ago by ▴ 10
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0
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2.3k
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How to choose singed or unsigned network in step-by-step WGCNA
WGCNA
4.1 years ago synat.keam • 0
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1
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1.5k
views
Trouble with gene dendrogram
Network RNASeq WGCNA
updated 3.0 years ago by • 0 • written 4.1 years ago by ▴ 10
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3
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2.4k
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Problem getting soft threshold power using WGCNA for RNA-seq data
RNASeq WGCNA
4.1 years ago jms2520 ▴ 10
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1
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1.7k
views
Summarising WGCNA data with modules and their corresponding gene ID and statistics
RNASeq WGCNA
4.1 years ago synat.keam • 0
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0
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1.0k
views
WGCNA Consensus Module Sign Question
wgcna
4.2 years ago erik.burchard • 0
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2
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1.4k
views
WGCA tutorial related question
WGCNA
4.2 years ago wes • 0
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0
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1.3k
views
WGCNA error during network construction
WGCNA Network R
4.2 years ago gitanjali • 0
0
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1
reply
2.1k
views
pre-proccessing of TCGA data for WGCNA
TCGAbiolinks WGCNA
updated 4.3 years ago by 43k • written 4.3 years ago by • 0
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0
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937
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WGCNA out of memory
wgcna RNASeq
4.4 years ago zli1 • 0
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2
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3.1k
views
WGCNA adjust p value
WGCNA
written 4.4 years ago by ▴ 40
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0
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841
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Working with Binary Categorical Data using WGCNA and Unsigned Networks
WGCNA
4.5 years ago schum266 ▴ 10
1
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1
reply
1.8k
views
Determining number of genes in each module based on color in WGCNA package
WGCNA
4.5 years ago schum266 ▴ 10
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1
reply
1.1k
views
Query regarding WGCNA module formation
WGCNA RNAseq RNASeqData
updated 4.6 years ago by ▴ 760 • written 4.6 years ago by • 0
0
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1
reply
911
views
Query regarding WGCNA module
WGCNA
updated 4.6 years ago by ▴ 50 • written 4.6 years ago by • 0
0
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1
reply
2.7k
views
Removing batch effect by sva or combat and subsequent correlation analysis by WGCNA
WGCNA impute sva
updated 4.6 years ago by ▴ 60 • written 4.6 years ago by • 0
1
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1
reply
1.6k
views
No genes with Module Membership > 0.8
wgcna WGCNA hubgenes
updated 4.8 years ago by ▴ 70 • written 5.0 years ago by ▴ 10
10
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1
reply
5.3k
views
WGCNA: Module preservation vs consensus analysis
WGCNA wgcna
updated 4.8 years ago by ▴ 70 • written 4.8 years ago by ▴ 60
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0
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1.3k
views
Consensus wgcna soft threshold for each data
Transcriptomics WGCNA wgcna
4.8 years ago 2323982403 ▴ 60
336 results • Page 2 of 7
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That's a fascinating application of 3D printing in a scientific context. Using this technology to create custom lab equipment, models of mo…
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If you want to share your research progress and microbiome discoveries with colleagues or friends, [snaptroid android][1] download free mak…
Answer: Limma-voom sample weights and impact on DEG numbers by Gordon Smyth 53k
I recommend that you always use voomLmFit() instead of the earlier voom() or voomWithQualityWeights() functions. Personally, I would use sa…
Answer: wgcna module preseravtion taking too long? by ATpoint ★ 5.0k
WGCNA is not a Bioconductor package, you won't get an answer here. Consider biostars.org or the r/bioinformatics reddit. Note that 10 sampl…
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Answer: DESeq2 class error: superclass "ExpData" not defined in the environment of the o
Limma-voom sample weights and impact on DEG numbers
C: DESeq2 Following RSEM
Upcoming Ensembl API and data access changes - new blog post available
Comment: Highly similar RNA-seq samples in PCA - pooling or technical duplication?
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