Log In
Sign Up
about
faq
Ask a question
Latest
News
Jobs
Tutorials
Tags
Users
New Post
Latest
News
Jobs
Tutorials
Tags
Users
Log In
Sign Up
About
Limit
all time
today
this week
this month
this year
Unanswered
All posts
Sort
Update
Answers
Bookmarks
Creation
Replies
Rank
Views
Votes
Showing :
wgcna
•
reset
1
vote
1
reply
1.3k
views
Can I apply WGCNA on unmatched time point microarray data and clinical data?
WGCNA
8.6 years ago
joseph
▴ 50
0
votes
2
replies
2.5k
views
WGCNA multiple data sets overlapping analysis
wgcna
multiple data sets
overlap
updated 8.6 years ago by
Peter Langfelder
★ 3.0k • written 8.6 years ago by
2323982403
▴ 60
1
vote
0
replies
2.3k
views
Problem about module preservation statistics in WGCNA software
rnaseq
tcga
wgcna
8.8 years ago • updated 8.6 years ago
panagiotis.mokos
▴ 40
2
votes
1
reply
4.0k
views
How to load WGCNA TOM file?
wgcna
connectivity
8.7 years ago
syrttgump
▴ 20
0
votes
3
replies
2.1k
views
WGCNA crashes R on OSX
WGCNA
hclust
8.7 years ago
bag59
• 0
0
votes
4
replies
3.4k
views
WGCNA ranking of HUB genes
WGCNA
HUB
updated 8.7 years ago by
Lluís Revilla Sancho
▴ 760 • written 8.7 years ago by
arom2
• 0
1
vote
1
reply
8.0k
views
WGCNA: Different Detect Cut Heights Across Multiple Blocks
wgcna
clustering
gene expression
updated 8.7 years ago by
Peter Langfelder
★ 3.0k • written 8.7 years ago by
ngeraci
▴ 10
0
votes
6
replies
3.0k
views
WGCNA exporting for Visant visualization
wgcna
visant
updated 8.7 years ago by
Peter Langfelder
★ 3.0k • written 8.7 years ago by
arom2
• 0
1
vote
2
replies
3.0k
views
DESeq2 residuals log transformation input for WGCNA
deseq2
residuals
wgcna
updated 8.7 years ago by
Steve Lianoglou
★ 13k • written 8.7 years ago by
glmazzo
▴ 10
5
votes
8
replies
5.6k
views
Problem about picking soft threshold power in WGCNA software
wgcna
rnaseq
written 8.8 years ago by
panagiotis.mokos
▴ 40
0
votes
1
reply
2.2k
views
Windows fails to install package from source 'tar.gz', e.g., "GO.db"
go.db
WGCNA
updated 8.9 years ago by
Martin Morgan
25k • written 8.9 years ago by
s3462450
▴ 10
2
votes
2
replies
2.2k
views
ExportingWGCNA data for Ingenutity IPA
IPA
wgcna
network visualization
updated 8.9 years ago by
Peter Langfelder
★ 3.0k • written 8.9 years ago by
mrodrigues.fernanda
▴ 10
4
votes
9
replies
4.4k
views
WGCNA | pickSoftThreshold.fromSimilarity not working for input similarity matrix
WGCNA
similarity
correlation
bioconductor
rnaseq
updated 8.9 years ago by
Peter Langfelder
★ 3.0k • written 8.9 years ago by
jol.espinoz
▴ 40
1
vote
2
replies
2.5k
views
WGCNA | Which module is reserved for outliers/unclustered genes?
wgcna
updated 8.9 years ago by
Lluís Revilla Sancho
▴ 760 • written 8.9 years ago by
jol.espinoz
▴ 40
1
vote
0
replies
1.2k
views
BrainLists - userListEnrichment WGCNA
WGCNA
BrainLists
userListEnrichment
8.9 years ago
vinnu260
▴ 10
1
vote
2
replies
3.3k
views
WGCNA small number of genes
WGCNA
updated 8.9 years ago by
Peter Langfelder
★ 3.0k • written 8.9 years ago by
zson3366
▴ 10
3
votes
4
replies
3.8k
views
Question about WGCNA soft thresholding value
wgcna
9.0 years ago
jessewilson13
• 0
1
vote
8
replies
5.9k
views
WGCNA error : Error in hclust
WGCNA
updated 9.0 years ago by
Peter Langfelder
★ 3.0k • written 9.0 years ago by
lwang.daniel
▴ 10
0
votes
2
replies
1.8k
views
WGCNA analysis with NCBI GEO Series Matrix file?
WGCNA
geo data
updated 9.0 years ago by
Peter Langfelder
★ 3.0k • written 9.0 years ago by
mathavanbioinfo
▴ 20
1
vote
1
reply
1.1k
views
Finding specific modules compared to consensus modules; cut-off?
wgcna
9.0 years ago
Sindre
▴ 70
0
votes
2
replies
2.8k
views
WGCNA multiple samples
wgcna
updated 9.0 years ago by
Lluís Revilla Sancho
▴ 760 • written 9.0 years ago by
mh.manoj
• 0
1
vote
3
replies
1.5k
views
Wired modules WGCNA cluster dendrogam
wgcna
updated 9.1 years ago by
Peter Langfelder
★ 3.0k • written 9.1 years ago by
Sindre
▴ 70
7
votes
9
replies
2.2k
views
Unclear of calculating correlations with case+control samples together
WGCNA
wgcna
9.2 years ago
mocharrout
▴ 20
1
vote
0
replies
2.2k
views
WGCNA comparing and contrasting two networks
WGCNA
9.2 years ago
jhj89
▴ 10
1
vote
1
reply
1.5k
views
WGCNA: question on margin setting when using plotNetworkHeatmap
WGCNA
plotNetworkHeatmap
par
updated 9.2 years ago by
Peter Langfelder
★ 3.0k • written 9.2 years ago by
boyashuang
• 0
0
votes
3
replies
2.4k
views
Unable to get soft threshold power using WGCNA for RNA-seq data
rnaseq
wgcna
picksoftthreshold
updated 9.2 years ago by
Lluís Revilla Sancho
▴ 760 • written 9.2 years ago by
divara01
• 0
1
vote
8
replies
6.5k
views
Error in TOMplot (WGCNA)
WGCNA
TOMplot
9.2 years ago
Abhishek Singh
▴ 20
1
vote
5
replies
5.4k
views
WGCNA - How to prevent "blockwiseModules" command from dividing genes into multiple blocks?
WGCNA
RNA-Seq
updated 9.3 years ago by
Peter Langfelder
★ 3.0k • written 9.3 years ago by
gokce.ouz
▴ 70
0
votes
3
replies
1.5k
views
bicorAndPvalue in WGCNA
WGCNA
updated 9.3 years ago by
Lluís Revilla Sancho
▴ 760 • written 9.3 years ago by
bram.verstockt
▴ 20
0
votes
2
replies
1.1k
views
Highly correlated, non-significant modules
wgcna
9.3 years ago
bram.verstockt
▴ 20
5
votes
3
replies
3.6k
views
Analyzing RNA-seq data by WGCNA
wgcna
rna-seq
updated 9.3 years ago by
Peter Langfelder
★ 3.0k • written 9.3 years ago by
bram.verstockt
▴ 20
1
vote
2
replies
3.1k
views
Using WGCNA egiengenes for modules in correlated networks
wgcna
updated 9.3 years ago by
Peter Langfelder
★ 3.0k • written 9.3 years ago by
Lluís Revilla Sancho
▴ 760
1
vote
1
reply
2.0k
views
WGNCA kME vs. kIM
WGCNA
updated 9.3 years ago by
Lluís Revilla Sancho
▴ 760 • written 10.3 years ago by
akridgerunner
▴ 30
11
votes
8
replies
12k
views
Pre-processing of RNA-Seq data for WGCNA and DGE
WGCNA
RNA-Seq
DESeq2
voom
removebatcheffect()
updated 9.3 years ago by
Peter Langfelder
★ 3.0k • written 9.3 years ago by
gokce.ouz
▴ 70
2
votes
3
replies
1.8k
views
Problems with running limma voom on subsets of genes from WGCNA modules?
WGCNA
limma
voom
updated 9.3 years ago by
Aaron Lun
★ 29k • written 9.3 years ago by
Jenny Drnevich
★ 2.0k
2
votes
1
reply
1.7k
views
WGCNA - soft threshold
wgcna
updated 9.3 years ago by
Peter Langfelder
★ 3.0k • written 9.3 years ago by
g.atla
▴ 10
1
vote
1
reply
3.4k
views
WGCNA configured network of low scale-free topology fit
wgcna
updated 9.3 years ago by
Peter Langfelder
★ 3.0k • written 9.3 years ago by
chrisclarkson100
▴ 50
1
vote
5
replies
4.6k
views
adjacency function of WGCNA
wgcna
9.4 years ago
wlnjseu
• 0
4
votes
2
replies
3.9k
views
WGCNA blockwiseModules parallelisation question
wgcna
rnaseq
updated 9.4 years ago by
Peter Langfelder
★ 3.0k • written 9.4 years ago by
caitlin
▴ 10
0
votes
10
replies
5.5k
views
WGCNA differences two groups 10 replicates each group
WGCNA
updated 9.5 years ago by
Peter Langfelder
★ 3.0k • written 9.5 years ago by
nicky.driedonks
• 0
0
votes
0
replies
1.0k
views
randomGLM error: fitted probabilities numerically 0 or 1 occurred
randomGLM
WGCNA
9.5 years ago
bram.verstockt
▴ 20
0
votes
1
reply
1.2k
views
randomGLM and WGCNA
randomGLM
WGCNA
updated 9.5 years ago by
Peter Langfelder
★ 3.0k • written 9.5 years ago by
bram.verstockt
▴ 20
1
vote
2
replies
2.2k
views
WGCNA maxBlockSize limit
microarray
wgcna
updated 9.5 years ago by
Peter Langfelder
★ 3.0k • written 9.5 years ago by
Xiaokuan Wei
▴ 230
11
votes
3
replies
6.5k
views
WGCNA - Signed vs signed hybrid networks
wgcna
updated 9.5 years ago by
Peter Langfelder
★ 3.0k • written 9.5 years ago by
bram.verstockt
▴ 20
0
votes
2
replies
3.0k
views
Error in for 'x' has a zero dimension WGCNA
R
wgcna
9.5 years ago
christopher.clarskon15
▴ 20
3
votes
4
replies
4.3k
views
interactive networks from WGCNA clusters
wgcna
rcytoscape
updated 9.5 years ago by
branislav misovic
▴ 120 • written 9.5 years ago by
christopher.clarskon15
▴ 20
4
votes
5
replies
2.9k
views
WGCNA network visualisation in RCyjs
WGCNA
rcytoscape
network analysis
updated 9.6 years ago by
Paul Shannon
▴ 470 • written 9.6 years ago by
christopher.clarskon15
▴ 20
1
vote
3
replies
2.6k
views
WGCNA clustering configuration
clustering
wgcna
microarray
updated 9.6 years ago by
Peter Langfelder
★ 3.0k • written 9.6 years ago by
Lluís Revilla Sancho
▴ 760
3
votes
5
replies
9.2k
views
Wgcna with missing values - error with calculation of bicor correlations in pickSoftThreshold and blockwiseModules
software error
rnaseq
wgcna
missing data
10.1 years ago • updated 9.7 years ago
dvillarlozano
▴ 10
3
votes
2
replies
3.1k
views
Finding nearest neighbors of given hub gene in a co-expression network module
wgcna
rbgl
graph
coexpression
hub genes
updated 9.8 years ago by
Peter Langfelder
★ 3.0k • written 9.8 years ago by
Alan Smith
▴ 150
336 results • Page
6 of 7
Recent ...
Replies
Answer: ATACseq rudimentary questions
by
Kevin Blighe
★ 4.0k
For differential analysis tools like DiffTF and TOBIAS, the standard and statistically sound approach is to create **one large consensus pe…
Answer: Clarification on counting in Rsubread (featureCounts)
by
Kevin Blighe
★ 4.0k
Dear Luca, This is a very plausible behavior caused by **read assignment ambiguity** due to **overlapping gene coordinates** (specifical…
Answer: How to install packages such as TCGAbiolinks, SumarizedExperiment?
by
Gordon Smyth
53k
The warning message is telling you that you already have the packages installed. However, you might consider upgrading to the current vers…
Comment: Guitar R package requires update due to dependency GenomicFeatures
by
Frank
• 0
Created by French developer Julien "Orteil" Thiennot, Cookie Clicker transformed the gaming landscape by introducing a new genre of idle ga…
Comment: Empty boxes in treemap plot rrvgo package
by
TikTsokaasocissalpc
• 0
Clear visualization matters just as much in mobile entertainment as in data analysis. The [Try KK33 Game App now][1] focuses on clean layou…
Votes
A: limma-voom duplicateCorrelation once or twice, difference?
A: limma: comparison of repeat measurements - blocking or within-subject correlatio
Answer: DecideTest vs topTAGs in edgeR
A: LIMMA time series spline model.matrix design setup
Answer: Limma-voom sample weights and impact on DEG numbers
Awards
• All
Teacher
to
Gordon Smyth
53k
Popular Question
to
shepherl
4.2k
Popular Question
to
Hervé Pagès
16k
Popular Question
to
Vincent J. Carey, Jr.
6.7k
Popular Question
to
Istvan Albert
▴ 50
Locations
• All
The Cave, 181 Longwood Avenue, Boston, USA,
1 minute ago
WEHI, Melbourne, Australia,
1 hour ago
The city by the bay,
3 hours ago
United States,
3 hours ago
Türkiye,
6 hours ago
Traffic: 2202 users visited in the last hour
Content
Search
Users
Tags
Badges
Help
About
FAQ
Access
RSS
API
Stats
Use of this site constitutes acceptance of our
User Agreement and Privacy Policy
.
Powered by the
version 2.3.6