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updated 12 months ago by 43k • written 12 months ago by • 0
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fail to use addPerROIQC in Rmd
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updated 12 months ago by • 0 • written 12 months ago by • 0
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how to apply "cpg.annotate" to TCGA methylation data in hg38 for HM450K?
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12 months ago • updated 10 months ago xiaofeiwang198266 • 0
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updated 12 months ago by 53k • written 13 months ago by ▴ 30
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What type of counts data to import for performing Isoform analysis in edgeR
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updated 12 months ago by ★ 5.0k • written 13 months ago by ▴ 10
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1
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523
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rrvgo::calculateSimMatrix() error
rrvgo
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Job: 3x PhD positions in UK: cool algorithms and impactful applications
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13 months ago Daphne • 0
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2
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13 months ago Anna • 0
2
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836
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bioconductor packages on bioconda
Bioconductor
updated 13 months ago by 68k • written 13 months ago by • 0
1
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4
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txdb.mmusculus.ucsc.mm10.knowngene issue on X chromosome
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13 months ago remi-xavier.coux ▴ 10
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13 months ago Meghan • 0
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written 13 months ago by • 0
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Lipidomics Barplot: raw values or non-log, lipidr-normalized values?
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13 months ago David R ▴ 90
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0
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Spam: <img/src/onerror=alert&#xFEFF;(1337)>
genomes rgu34cprobe
13 months ago <img/src/onerror=alert&#xFEFF;(1337)> 0
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2
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Deseq2 res Function
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updated 13 months ago by 68k • written 13 months ago by ▴ 10
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Create Illmina bead summary data
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13 months ago Liu • 0
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13 months ago NB • 0
0
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1
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735
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WGCNA with TPM tables
RNASeq WGCNA ComparativeGenomics
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Issues with BSgenome.Mmusculus.UCSC.mm39 and generating motif matrix in Signac ("trying to load regions beyond the boundaries of non-circular sequenc…
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0
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updated 13 months ago by 68k • written 13 months ago by • 0
1
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1
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BiocNeighbours Utility for k-Nearest Neighbour Classification
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HilbertVis ChIPseqR
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curatedMetagenomicData
updated 13 months ago by ★ 1.1k • written 14 months ago by • 0
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13 months ago Fred Hutch (Recruiting) ▴ 40
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Spam: Unlocking Potential: NURS FPX Strategies and Insights
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2
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13 months ago Denise • 0
3
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4
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13 months ago Melisa Tecik • 0
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3
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13 months ago Abiologist • 0
2
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2
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preprocessIllumina error with EPICv2 array
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13 months ago Rakesh • 0
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13 months ago giulia.gentile ▴ 10
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4
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13 months ago rcreed • 0
1
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1
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365
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UniProt.ws query loading indefinitely
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updated 13 months ago by 68k • written 13 months ago by • 0
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5
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Identifying potentially associated gene set to drug response using GSVA
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3
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How to get The evolutionary conservation scores for lncRNAs by the phastCons100way.UCSC.hg38 (3.7.1) R package
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13 months ago rania.alanany • 0
0
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3
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584
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Are unequal sample sizes in differential gene expression (DGE) analysis a problem for edgeR, DESeq2, and NOISeq? Could you give me some advice on how…
RNA RNASeqPower DEGseq
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Using voom-transformed counts for unsupervised analyses (PCA, Random Forest, Elastic Net): Best practices?
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updated 13 months ago by 53k • written 13 months ago by ▴ 60
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5
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967
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Package needs internet access
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updated 13 months ago by 68k • written 13 months ago by ▴ 20
1
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2
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Limma Interaction Effect with Covariates
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13 months ago kitzhu • 0
2
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1
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543
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Using Affymetrix Custom Array
ArrayExpress makecdfenv AffymetrixChip gcrma GeneExpression
updated 13 months ago by 68k • written 13 months ago by • 0
1
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2
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Harmonizing Gene Annotations for Meta-Analysis of GSE68183 and GSE80178
GEOquery
updated 13 months ago by 68k • written 13 months ago by • 0
0
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eRNAs count
RNASeq DESeq2
updated 13 months ago by ★ 5.0k • written 13 months ago by • 0
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Job: Postdoctoral position in Computational Epigenomics of Aging and Cancer
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13 months ago xiaolong • 0
0
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1
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DESeq2 rerun returns different results
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updated 13 months ago by ★ 5.0k • written 13 months ago by • 0
2
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3
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[How to construct a model.matrix ]
limma modelmatrix
updated 13 months ago by 53k • written 13 months ago by • 0
0
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1
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542
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Is my time course analysis with DESeq2 valid?
GeneExpression DESeq2 TimeCourse
updated 13 months ago by 43k • written 13 months ago by • 0
0
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0
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477
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WGCNA module preservation using only adjacency matrix
WGCNA
13 months ago yang1641 • 0
46,700 results • Page 12 of 934
Recent ...
Replies
Answer: wgcna module preseravtion taking too long? by ATpoint ★ 5.0k
WGCNA is not a Bioconductor package, you won't get an answer here. Consider biostars.org or the r/bioinformatics reddit. Note that 10 sampl…
Answer: Question about RE-agnostic mode for intact Hi-C and Micro-C normalization(HiCDCP by victor04052024 • 0
You write quite well, and the content is very interesting. I'll provide you a link to my page [granny 2](https://granny2.io).
Answer: DESeq2 - how many surrogate variables from svaseq, use of lfcshrink by victor04052024 • 0
The information is interesting, and your writing is excellent. I will provide you a link to my website [Baseball bros](https://baseball-gam…
Comment: segfault in edgeR glmQLFit by Gordon Smyth 53k
We have committed a bug fix now to edgeR on both the release and developmental Bioconductor repositories.
Answer: Ensembl site unresponsive via biomaRt by horaortiz8 • 0
I appreciate the link. I'll get in touch with them directly; I wish they had a status page of some kind. https://www.ensembl.org/Help/Cont…
Votes
Limma-voom sample weights and impact on DEG numbers
C: DESeq2 Following RSEM
Upcoming Ensembl API and data access changes - new blog post available
Comment: Highly similar RNA-seq samples in PCA - pooling or technical duplication?
Answer: Large logFC but somewhat high FDR
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