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803
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bioconductor packages on bioconda
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12 months ago remi-xavier.coux ▴ 10
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12 months ago NB • 0
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706
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BiocNeighbours Utility for k-Nearest Neighbour Classification
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12 months ago Fred Hutch (Recruiting) ▴ 40
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12 months ago Denise • 0
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12 months ago Melisa Tecik • 0
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12 months ago Abiologist • 0
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12 months ago Rakesh • 0
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12 months ago giulia.gentile ▴ 10
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updated 12 months ago by ★ 5.0k • written 12 months ago by • 0
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12 months ago xiaolong • 0
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12 months ago yang1641 • 0
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12 months ago Simone • 0
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12 months ago dseauer • 0
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12 months ago 育 • 0
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Is it possible to parallelise saveHDF5SummarizedExperiment
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13 months ago • updated 12 months ago Stefano Mangiola ▴ 40
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DESeq2 "Not full rank" and "less than full rank" error
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13 months ago elgomez • 0
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1
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573
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updated 13 months ago by 16k • written 13 months ago by • 0
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46,691 results • Page 12 of 934
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Comment: BiocParallel (and DESeq2) - wrong args for environment subassignment by Michael Love 43k
BTW, I tested with no issue on MacOS ARM on our previous github issue.
Answer: DESeq(dds, parallel=TRUE) wrong args for environment subassignment by Michael Love 43k
The DESeq2 error makes sense, as we've talked about, given that the simple `bplapply` isn't working in your setup. Maybe give the traceb…
Answer: PTM analysis in LIMPA by Gordon Smyth 53k
For PTM analysis, the usual quantification command dpcQuant() is replaced by dpcImpute(). Otherwise the limpa pipeline is the same as for a…
Answer: problem reading bam files into nucleR by James W. MacDonald 68k
The first step is to update to the current versions of R/Bioconductor and try again. It's possible that you have run into a bug that's alre…
Answer: Question about DESeq2 Design for Paired Treatment Study by ATpoint ★ 5.0k
It's a paired analysis so you don't need any patient-specific covariates such as age and sex. What you call batch effect might just be the …
Votes
C: DESeq2 Following RSEM
Upcoming Ensembl API and data access changes - new blog post available
Comment: Highly similar RNA-seq samples in PCA - pooling or technical duplication?
Answer: Large logFC but somewhat high FDR
Comment: upstream git branches of bioc-release
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