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3
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[How to construct a model.matrix ]
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updated 13 months ago by 53k • written 13 months ago by • 0
0
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1
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546
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Is my time course analysis with DESeq2 valid?
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updated 13 months ago by 43k • written 13 months ago by • 0
0
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485
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13 months ago yang1641 • 0
0
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0
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284
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13 months ago Simone • 0
3
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4
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1.2k
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Limma- Print-tip loess normalisation-printer layout information does not match M row dimension
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13 months ago dseauer • 0
0
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2
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796
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installation error for BiocNeighbors package
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13 months ago 育 • 0
0
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3
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799
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Is it possible to parallelise saveHDF5SummarizedExperiment
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13 months ago Stefano Mangiola ▴ 40
0
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1
reply
640
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DESeq2 "Not full rank" and "less than full rank" error
DESeq2 deseq
updated 13 months ago by ★ 4.1k • written 13 months ago by • 0
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2
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updated 13 months ago by ★ 5.0k • written 13 months ago by • 0
0
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0
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595
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Errors trying to load EPIC v2 data in ChAMP
ChAMP ChAMPdata
13 months ago elgomez • 0
0
votes
1
reply
599
views
forgeBSgenomeDataPkgFromNCBI: Error in find_NCBI_assembly_ftp_dir unable to find FTP dir
BSgenomeForge non-modelorganism unabletofindFTPdir
updated 13 months ago by 16k • written 13 months ago by • 0
0
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3
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942
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ChIPpeakAnno can not load data
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10
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7
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2.4k
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Why in Bioconductor community people rarely upvote questions?
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updated 13 months ago by 4.2k • written 2.9 years ago by ▴ 50
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3
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29k
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DESeq2: thousands of NA for pvalues?
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1
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3
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919
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makeContrastsDream for Interaction
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13 months ago abadgerw • 0
0
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5
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1.2k
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Merge Replicates vs Mixed Model
limma DifferentialExpression variancePartition dream
13 months ago abadgerw • 0
1
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6
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1.7k
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Volcano plot has many values around zero
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updated 13 months ago by 43k • written 13 months ago by ▴ 10
2
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4
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Differential Expression Analysis with unbalanced batches without replication between conditions
edgeR BatchEffect
updated 13 months ago by 53k • written 14 months ago by • 0
1
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8
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0
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2
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585
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2
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7
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updated 14 months ago by • 0 • written 15 months ago by • 0
0
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0
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356
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ChIP peaks comparison
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14 months ago user_bioinfo • 0
0
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2
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GOstats kegg analysis in wheat - help - none of the objects in the first column are legitimate kegg ids (but they are)
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14 months ago • updated 13 months ago GV Yoshikawa • 0
1
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2
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1.5k
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Consistent Decimals In Data After Antibody Array Background Correction Using Limma:nec Function
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14 months ago Ai • 0
4
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5
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14 months ago LuciaNhu • 0
0
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0
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Diffbind: Cut&Run: E-coli spike-in
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14 months ago kim • 0
0
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0
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414
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14 months ago brayas13 • 0
2
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3
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featureCounts segmentation fault with large chromosomes
Rsubread
14 months ago vkkodali ▴ 10
0
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1
reply
761
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Average expression of genes across replicates
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updated 14 months ago by ★ 5.0k • written 14 months ago by • 0
0
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1
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969
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Spike-in normalization method in ATACseq
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single cell RNA seq pseudobulk batch correction
edgeR
updated 14 months ago by 68k • written 14 months ago by • 0
0
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1
reply
939
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Normalized counts to be used in decoupleR from deseq2 results
decoupleR
updated 14 months ago by 68k • written 14 months ago by • 0
2
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10
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incomplete official symbol mitochondrial genes in org.Hs.eg.db?
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updated 13 months ago by 68k • written 14 months ago by ★ 4.1k
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8
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986
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updated 14 months ago by 68k • written 14 months ago by • 0
0
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0
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344
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export processed data from flowploidy
flowPloidy
14 months ago Zdenek Skala • 0
0
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1
reply
444
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edit y axis scale in errBarchart?
ddCt
updated 14 months ago by 68k • written 14 months ago by • 0
2
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2
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1.1k
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Error: 'term_similarity_from_KEGG' not found in simplifyEnrichment package
simplifyEnrichment
updated 14 months ago by 68k • written 14 months ago by • 0
1
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0
replies
1.5k
views
News: Bioconductor 3.20 is Released!
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14 months ago shepherl 4.2k
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0
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14 months ago info ▴ 10
0
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1
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683
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probe ID search for SNP (plink)
genomes
updated 14 months ago by 68k • written 14 months ago by • 0
2
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2
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946
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clusterProfiler enrichGO on only T-cell related GO terms
clusterProfiler
updated 14 months ago by ★ 1.2k • written 14 months ago by • 0
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11
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DESeq2
updated 9 months ago by • 0 • written 14 months ago by • 0
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2
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1.6k
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basilisk
updated 14 months ago by ★ 5.0k • written 14 months ago by ▴ 40
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9
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3.0k
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biomaRt rnorvegicus_gene_ensembl not available anymore
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updated 12 months ago by 68k • written 14 months ago by ▴ 20
0
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0
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Filtering Steps for proActiv Analysis
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14 months ago LuciaNhu • 0
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3
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Why `FoldEnrichment`,`RichFactor`and `zScore` are not in the ReactomePA::enrichPathway result
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14 months ago Yifeii.Ge • 0
0
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572
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Deseq to output continous sequencing data
DESeq2
updated 14 months ago by 43k • written 14 months ago by • 0
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4
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Adjusted p-values become NA when sub-setting samples
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14 months ago txema.heredia • 0
3
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3
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Robust way of dealing with low number of samples for Differential Gene Expression
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diffbind covariates
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