0
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3
replies
371
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segfault in edgeR glmQLFit
edgeR
updated 9 weeks ago by 53k • written 10 weeks ago by • 0
0
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4
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706
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How does contrasts.fit do in limma to extract comparisons with a model having interaction terms?
limma
updated 7 weeks ago by • 0 • written 10 weeks ago by • 0
0
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1
reply
365
views
News: Opportunity to host EuroBioC2026 Preconference workshops!
Conference Workshop Bioconductor
written 10 weeks ago by • 0
0
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2
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244
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NUPOP usage
TOAST
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1
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2
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484
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News: Important: Bioconductor Release 3.22 Delayed
release
written 4 months ago by 4.3k
0
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1
reply
342
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PTM analysis in LIMPA
limpa
updated 6 weeks ago by 53k • written 12 weeks ago by • 0
1
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2
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529
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News: Upcoming Ensembl API and data access changes - new blog post available
ensembl mart biomaRt ensembldb
written 12 weeks ago by ▴ 10
0
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2
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362
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problem reading bam files into nucleR
nucleR
updated 12 weeks ago by 68k • written 3 months ago by ▴ 10
0
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0
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14
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Spam: Career Growth After CCNP Certification Training: Roles, Salaries & Opportunities
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12 weeks ago Maya 0
0
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0
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10
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Spam: Career Growth After CCNP Certification Training: Roles, Salaries & Opportunities
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12 weeks ago Maya 0
0
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0
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9
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Spam: Career Growth After CCNP Certification Training: Roles, Salaries & Opportunities
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12 weeks ago Maya 0
0
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0
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8
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Spam: Career Growth After CCNP Certification Training: Roles, Salaries & Opportunities
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0
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0
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Spam: Career Growth After CCNP Certification Training: Roles, Salaries & Opportunities
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3
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6
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Highly similar RNA-seq samples in PCA - pooling or technical duplication?
RNASeq DESeq2 DifferentialExpression RNASeqData
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0
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1
reply
1.4k
views
two questions about limma
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updated 3 months ago by 53k • written 19.0 years ago by ▴ 240
0
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1
reply
284
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Question about DESeq2 Design for Paired Treatment Study
DESeq2
updated 3 months ago by ★ 5.0k • written 3 months ago by • 0
0
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1
reply
455
views
News: EuroBioC2026 abstract submission is open!
Conference Bioconductor
written 3 months ago by • 0
0
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1
reply
250
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PFAM formats changed - is it still possible to use this with ISA?
IsoformSwitchAnalyzeR
written 3 months ago by • 0
0
votes
3
replies
408
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DECIPHER DesignProbes unable to design FISH-probes
decipher FISH DECIPHER FISH-probe probe-design
written 3 months ago by • 0
0
votes
2
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1.3k
views
p.adjust BH Question
written 14.5 years ago by ▴ 10
1
vote
4
replies
599
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Large logFC but somewhat high FDR
limpa
3 months ago • updated 12 weeks ago JKim • 0
0
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1
reply
401
views
Job: Bioinformatician at the Lausanne University Hospital
GenomicRanges JobPosting
written 3 months ago by ▴ 20
3
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5
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652
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upstream git branches of bioc-release
Bioconductor
written 3 months ago by ▴ 10
0
votes
2
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359
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limpa - drivers for unusually high standard error?
limpa
updated 3 months ago by 53k • written 3 months ago by • 0
1
vote
4
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2.2k
views
How can I correctly use phyloseq with Docker?
phylo phyloseq Docker
updated 11 weeks ago by • 0 • written 10 months ago by • 0
0
votes
2
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561
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Boolean Gate Combination for Any 2 Positive Events in flowWorkspace
flowWorkspace FlowCytometry
written 7 months ago by • 0
0
votes
2
replies
1.3k
views
Install old version of DESeq2
apeglm Install DESeq2 version
updated 3 months ago by ★ 4.0k • written 7 months ago by • 0
0
votes
1
reply
506
views
Guidance Requested on GCN Network Analysis and Module Enrichment in R
BioNERO Bioconductor Arabidopsis_thaliana_Data
updated 3 months ago by ★ 4.0k • written 7 months ago by • 0
0
votes
2
replies
512
views
ORFik: spliced 5utr regions
splicing 5utr ORFik
updated 3 months ago by ★ 4.0k • written 7 months ago by • 0
0
votes
2
replies
921
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BiocManager::install() doesn't work
Install Biocond
updated 3 months ago by ★ 4.0k • written 7 months ago by • 0
0
votes
2
replies
531
views
Results with PON give more variants
mutect2 variants pon
written 7 months ago by ▴ 10
0
votes
2
replies
491
views
Empty boxes in treemap plot rrvgo package
rrvgo
written 7 months ago by • 0
0
votes
1
reply
384
views
CRISPRSeek Question: changing weight and gRNA.size causes error
CRISPRseek CRISPR
updated 3 months ago by ★ 4.0k • written 7 months ago by • 0
0
votes
2
replies
709
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Feedback needed on new user-friendly BED file tool
bedbaser offtopic
updated 3 months ago by ★ 4.0k • written 7 months ago by • 0
0
votes
1
reply
411
views
sigDF object in sesame
sesame sesameData
updated 3 months ago by ★ 4.0k • written 6 months ago by • 0
0
votes
3
replies
494
views
Create consensusMatrix for codon bases
Biostrings
updated 3 months ago by ★ 4.0k • written 6 months ago by • 0
0
votes
2
replies
545
views
Memory error while running alignments
DECIPHER Alignment
updated 3 months ago by ★ 4.0k • written 6 months ago by • 0
1
vote
11
replies
2.6k
views
Using DESeq2 on single cell RNA Seq data of same cell type but different conditions that were pseudo bulked
DESeq2 scRNAseq
updated 3 months ago by ★ 4.0k • written 6 months ago by • 0
0
votes
1
reply
389
views
Finding duplicated entries in GRangesList
GenomicRanges
updated 3 months ago by ★ 4.0k • written 6 months ago by • 0
0
votes
2
replies
453
views
DESeq2 on non-RNASeq counts data
DESeq2
written 6 months ago by • 0
0
votes
2
replies
645
views
After running samtools, the featureCounts command crashed.
RNASeqData Bioconductor RNASeq
updated 3 months ago by • 0 • written 5 months ago by • 0
0
votes
2
replies
749
views
Problem with the TMB plot
Bioconductor
written 5 months ago by • 0
0
votes
1
reply
371
views
mzR-Rcpp compiler version issue
Rcpp Perseus mzR
updated 3 months ago by 1.6k • written 6 months ago by • 0
2
votes
3
replies
672
views
DESeq2 design for haplotype MPRA
Bioconductor
written 4 months ago by • 0
0
votes
1
reply
634
views
Must I do pseudobulk analysis on Cell Surface Protein Labeling data of Single Cell RNA Sequencing
scRNAseq
updated 3 months ago by ★ 4.0k • written 3 months ago by • 0
0
votes
0
replies
417
views
Corrupted SQLite while trying to install PANTHER.db?
SQLite PANTHER.db
updated 3 months ago by ★ 4.0k • written 6 months ago by • 0
0
votes
1
reply
532
views
org.Ss.eg.db MAMDC4 maps to incorrect UNIPROT key
MAMDC4 org.Ss.eg.db AnnotationDbi
written 6 months ago by • 0
0
votes
1
reply
415
views
Length of 'dimnames' [1] not equal to array extent
SingleCellExperiment singlecelle scRNAseq
updated 3 months ago by ★ 4.0k • written 6 months ago by • 0
0
votes
1
reply
464
views
Extract snp information from genomic regions with biomaRt -> "oaries_snp"
biomaRt
updated 3 months ago by ★ 4.0k • written 5 months ago by • 0
0
votes
2
replies
419
views
3-factor DESeq2 trime-series analysis
time-series DESeq2
updated 3 months ago by ★ 4.0k • written 5 months ago by • 0
46,779 results • Page 3 of 936
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Answer: Inconsistencies between accessor functions for TxDb databases with selected seql by a2a2hd42aa • 0
Technical inconsistencies in database accessors can disrupt your workflow, but finding a reliable source to download online mobile games sh…
Comment: Can sample-level weights be used when analysing GSVA scores in limma? by A.Barden ▴ 20
Thanks both for this useful information.
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SNPlocs.Hsapiens.dbSNP155.GRCh38 is available for download from the same location as always. It has not changed since Bioc 3.20: Presumabl…
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Similarly, for structural complexity in the [He777 Game][1] APK, having precise control over every detail is what makes a high-performance …
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Hi, thank you all for the advice. Using James's advice, I managed to install SNPlocs.Hsapiens.dbSNP155.GRCh38, but it took almost half an …
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Do I map probes to gene symbols BEFORE or AFTER differentially expressed gene analysis?
Answer: Can sample-level weights be used when analysing GSVA scores in limma?
Answer: Can sample-level weights be used when analysing GSVA scores in limma?
Comment: Can sample-level weights be used when analysing GSVA scores in limma?
Answer: Issue loading and downloading Bioconductor 3.22 packages after update
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