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BSgenome package for T2T-CHM13v2.0 assembly and SNPlocs package for dbSNP155
BSgenome
dbSNP
T2T-CHM13v2.0
SNPlocs
2.0 years ago
Hervé Pagès
16k
0
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598
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News:
Support Site Bioconductor Award
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Bioc2022
Bioconductor
2.1 years ago
shepherl
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804
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News:
Bioconductor 3.15 db0s, OrgDbs and TxDbs now available
annotation
release
db0
2.1 years ago • updated 2.0 years ago
kayla.interdonato
▴ 160
2
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News:
News:Ensembl 106 has just been released!
ensembl
biomaRt
ensembldb
2.1 years ago
Benjamin
▴ 30
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664
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News:
Bioconductor Community Engagement, Outreach, and Diversity Award
Bioc2022
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Bioconductor
Recognition
2.1 years ago
shepherl
3.9k
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617
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News:
New Package Submission Deadline Tomorrow for Bioconductor 3.15
Release
Software
Bioconductor
Devel
2.1 years ago
shepherl
3.9k
0
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0
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664
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News:
Bioconductor Award for Outstanding Documentation
Bioc2022
Awards
Bioconductor
Recognition
2.1 years ago
shepherl
3.9k
1
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900
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News:
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presentation
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bioc2022
2.3 years ago • updated 2.1 years ago
shepherl
3.9k
1
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News:
scMET: Bayesian modelling of DNA methylation heterogeneity at single-cell resolution
scMET
2.1 years ago
kapouranis.andreas
▴ 10
1
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829
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News:
Bioconductor Release 3.15 Schedule
Devel
release
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devel
2.2 years ago
shepherl
3.9k
0
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674
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News:
Join the Bioconductor Community Advisory Board -- Deadline this Friday February 25
bioconductoroversight
community
CAB
2.2 years ago
shepherl
3.9k
5
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News:
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bioconductoroversight
community
CAB
2.3 years ago • updated 2.2 years ago
shepherl
3.9k
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News:
BioC2022 Seattle July 27-29 hybrid conference organizing committee
bioc2022
Conference
2.4 years ago
Levi Waldron
★ 1.1k
1
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792
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News:
Ensembl 105 has just been released!
ensembl
biomaRt
ensembldb
2.4 years ago
mchakiachvili
▴ 20
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5
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News:
Final List of Deprecated Packages for Bioc3.14
ExperimentData
Deprecation
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2.6 years ago • updated 2.0 years ago
shepherl
3.9k
8
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Bioconductor
2.5 years ago
shepherl
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2
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1.0k
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Ascona Workshop “Biological systems: from first principles to data-driven modelling and back” 27. 3. - 1. 4. 2022
theory
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ascona
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2.5 years ago • updated 15 months ago
Wolfgang Huber
★ 13k
3
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1
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704
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News:
Service problems noted
bioconductor
updated 2.6 years ago by
shepherl
3.9k • written 2.6 years ago by
Vincent J. Carey, Jr.
6.7k
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BioC Asia Virtual Meeting, 1-4 November 2021
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Asia
BioCAsia
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2.6 years ago
Peter Hickey
▴ 740
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798
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New Package Submission Deadline for Bioc Release 3.14
newpackage
Deadline
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2.6 years ago
shepherl
3.9k
1
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851
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devel
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2.6 years ago
shepherl
3.9k
2
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1.1k
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News:
BioCAsia Virtual Meeting, 15-18 October 2020
news
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Matthew Ritchie
▴ 1000
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knitr ERROR on Biocondcutor builders
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2.8 years ago
shepherl
3.9k
3
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721
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Community
SinglePackageBuilder
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Bioconductor
2.8 years ago
shepherl
3.9k
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796
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Bioconductor 2021 Scholarship and Caregiver Awards
Bioc2021
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2.8 years ago
shepherl
3.9k
0
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763
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Bioconductor
Bioc2021
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2.9 years ago
shepherl
3.9k
5
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0
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1.0k
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Bioconductor 3.13 is Released!
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Bioconductor
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3.0 years ago • updated 2.9 years ago
shepherl
3.9k
0
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0
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724
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Long-term Bioconductor Contribution Award
Bioconductor
Bioc2021
Recognition
Awards
2.9 years ago
shepherl
3.9k
2
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5
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3.3k
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News:
New in DiffBind 3.2: dba.plotProfile() - Peak profiles and profile heatmaps
profileplyr
ATACSeq
DiffBind
ComplexHeatmap
ChIPSeq
updated 16 months ago by
Junsik
• 0 • written 2.9 years ago by
Rory Stark
★ 5.2k
0
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0
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724
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News:
Last day to make commit before the RELEASE_3_13
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Bioc3.13
3.0 years ago
shepherl
3.9k
0
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0
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797
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News:
Scientific or Informatic Technology Advancement Award!
Bioconductor
Bioc2021
Recognition
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3.0 years ago
shepherl
3.9k
1
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745
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News:
Bioconductor Award for Outstanding Documentation
Bioc2021
Awards
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Bioconductor
3.0 years ago
shepherl
3.9k
1
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828
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News:
Bioconductor 3.13 db0s, OrgDbs and TxDbs now available
annotation
release
db0
3.0 years ago
kayla.interdonato
▴ 160
2
votes
2
replies
1.5k
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News:
Final List of Deprecated Packages for Bioc3.13
Workflow
Software
ExperimentData
Deprecation
3.4 years ago • updated 3.0 years ago
shepherl
3.9k
0
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0
replies
804
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News:
Nominations for Bioconductor Technical Advisory Board are open
community
Bioconductor
3.0 years ago
Charlotte Soneson
▴ 170
1
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1.0k
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News:
Ensembl 104 has just been released!
ensembldb
biomaRt
3.0 years ago
mchakiachvili
▴ 20
0
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0
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813
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News:
Community engagement, outreach, and diversity award
awards
bioc2021
recognition
community
Bioconductor
3.0 years ago
shepherl
3.9k
0
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reply
1.0k
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News:
Bioconductor 3.13 New Package Submission Deadline
release
Submission
newpackage
Release
Deadline
3.1 years ago • updated 3.0 years ago
shepherl
3.9k
0
votes
0
replies
884
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News:
Support Site Bioconductor Award
recognition
awards
bioc2021
Bioconductor
3.0 years ago
shepherl
3.9k
1
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0
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823
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News:
Terra / AnVIL R / Bioconductor Popup Workshops
AnVIL
workshop
Bioconductor
Terra
3.1 years ago
shepherl
3.9k
0
votes
0
replies
804
views
News:
Bioconductor Release 3.12 and Bioconductor Devel 3.13 Code Freeze Deadlines!
Bioconductor
release
devel
deadline
3.1 years ago • updated 3.0 years ago
shepherl
3.9k
0
votes
0
replies
761
views
News:
Nominations for Bioconductor 2021 Awards!
Awards
Recognition
Bioconductor
Bioc2021
3.1 years ago
shepherl
3.9k
0
votes
0
replies
916
views
News:
Bioconductor Release 3.13 Schedule
release
Release
3.1 years ago • updated 3.0 years ago
shepherl
3.9k
0
votes
0
replies
782
views
News:
Bioc2021 Registration is Open
Conference
Bioc2021
3.1 years ago
shepherl
3.9k
0
votes
0
replies
620
views
News:
User handle changes to site
Bioconductor
handles
3.1 years ago
natay.aberra
10
0
votes
1
reply
1.1k
views
News:
Updates to BiocFileCache, AnnotationHub, and ExperimentHub
BiocFileCache
AnnotationHub
ExperimentHub
cache
3.1 years ago
shepherl
3.9k
2
votes
0
replies
880
views
News:
New Bioconductor Community Advisory Board Members for 2021
bioconductoroversight
news
community
BiocVersion
3.1 years ago
Matthew Ritchie
▴ 1000
0
votes
1
reply
922
views
News:
SBGNview manuscript on bioRxiv now
pathway
SBGNview
Reactome
pathview
PANTHER
written 3.1 years ago by
Luo Weijun
★ 1.6k
0
votes
1
reply
935
views
News:
Submission Deadline for Bioc2021 Next Week!
Conference
Bioc2021
updated 3.1 years ago by
Levi Waldron
★ 1.1k • written 3.2 years ago by
shepherl
3.9k
1
vote
1
reply
1.1k
views
News:
SBGNview: Data Analysis, Integration and Visualization on 5000+ Pathways/3000+ Species
SBGNview
pathways
SBGNview.data
pathview
visualization
3.2 years ago
Luo Weijun
★ 1.6k
494 results • Page
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Answer: limma Intercept vs No-intercept models completely changing DMR results?
by
James W. MacDonald
65k
This part: ``` design_intercept <- model.matrix(~Alt+Sex+Age+PC1, data=targets_Sherpa) colnames(design_intercept) <- c("AltSHP_LA","Al…
Comment: CombineArrays for EPIC and EPIC V2
by
Kim
• 0
Thank you Tim, this is a great help in getting me started!
Comment: Too many significant genes when integrating gtex and tcga
by
Michael Love
41k
Yes, this was one of the aspects we highlighted in the 2014 paper, and it's also in the workflow. Check these places first. Also take a st…
Answer: Too many significant genes when integrating gtex and tcga
by
James W. MacDonald
65k
See `?results`, in particular the lfcThreshold argument.
Comment: Once again a "Model matrix not full rank"
by
James W. MacDonald
65k
You already ran a temporal assay. Now you can compare each time point to the baseline. The interaction term is only applicable if you have…
Votes
Answer: CombineArrays for EPIC and EPIC V2
Answer: Too many significant genes when integrating gtex and tcga
Comment: Too many significant genes when integrating gtex and tcga
A: Print Differentially Expressed Exons From Dexseq Results
stuck on unimplemented type 'list' in 'EncodeElement'
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