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0
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0
replies
1.0k
views
no chip information in lumiHumanIDMapping?
lumi
lumihumanidmapping
8.5 years ago
aush
▴ 40
0
votes
0
replies
676
views
Analyst Positions for Deep-Sequencing Facility
16.1 years ago
Thomas Girke
★ 1.7k
0
votes
0
replies
773
views
export expression set from beadarray
beadarray
beadarray
15.6 years ago
Matthew Vitalone
▴ 40
0
votes
1
reply
413
views
HiCDCPlus extract_hic_eigenvectors() only works with larger bin sizes (> =250kb )?
HiCDCPlus
updated 11 months ago by
merve.sahn
• 0 • written 13 months ago by
mlin18
• 0
0
votes
0
replies
910
views
"Error: object 'nuID' not found" error when using `returnAllMatches=TRUE` in `IlluminaID2nuID()`
lumi
lumihumanidmapping
8.5 years ago
aush
▴ 40
0
votes
0
replies
809
views
r3Cseq file name convention
r3Cseq
9.0 years ago
felix.klein
▴ 150
0
votes
0
replies
349
views
bug report/repair in vcf2sm of GGtools
12.9 years ago
Vincent J. Carey, Jr.
6.7k
0
votes
0
replies
955
views
Re: Spelling mistakes and some questions re limma
Microarray
limma
Microarray
limma
20.8 years ago
Gordon Smyth
50k
0
votes
0
replies
810
views
ChIPQC comparison of controls - uniqueness error
chipqc
7.0 years ago
Coby Viner
▴ 50
0
votes
1
reply
1.2k
views
repeat mask for mm10?
BSgenome
BSgenome
BSgenome
BSgenome
11.5 years ago
Janet Young
▴ 740
0
votes
0
replies
926
views
exonmap problems with rma normalization
Normalization
cdf
exonmap
Normalization
cdf
exonmap
13.1 years ago
Gomez Moruno, Antonio
▴ 30
0
votes
0
replies
612
views
Course reminder: Intermediate R / Bioc for Sequence Analysis
Cancer
Cancer
11.3 years ago
Martin Morgan
25k
0
votes
0
replies
728
views
calling SAM using siggenes package
siggenes
siggenes
19.6 years ago
saran.2.vardhanabhuti@gsk.com
▴ 10
0
votes
0
replies
3.6k
views
rhdf5::h5dump requires write access
rhdf5
9.6 years ago
friedmab
▴ 10
1
vote
2
replies
928
views
GO.db for Bioconductor 3.17
GO.db
devel
15 months ago
Amanda D. Clark
• 0
0
votes
0
replies
800
views
RNA-seq Workshop An introductory course to RNA-seq 1st-2nd March 2012 Torino, Italy
Network
Network
12.4 years ago
rcaloger
▴ 500
0
votes
0
replies
1.0k
views
BitSeq: Required input for 3' bias correction on transcripts.
RNASeq
safe
BitSeq
RNASeq
safe
BitSeq
11.3 years ago
Dave Gerrard
▴ 40
0
votes
0
replies
834
views
0 values in cuff_data file from cummeRbund
cummeRbund
cuff_data
rnaseq
cuffset
6.0 years ago
alexandra.holden.2015
• 0
0
votes
1
reply
1.8k
views
Questions regarding removal and following re-installation of a specific R package using a custom library path
package installation
custom library path
biocLite
bioconductor
8.7 years ago
svlachavas
▴ 830
0
votes
0
replies
712
views
need to confirm this for GOHyperG
GO
GO
17.5 years ago
Weiwei Shi
★ 1.2k
0
votes
0
replies
2.4k
views
8. CGHCall problems (Bernard North [guest]) : Bioconductor Digest, Vol 126, Issue 7
aCGH
RNASeq
ChIPSeq
Proteomics
Annotation
Normalization
GO
Network
Cancer
ChipName
probe
10.7 years ago
Sarah JugurnauthLittle
▴ 20
0
votes
0
replies
895
views
gage function problem in R
gage
R
kegg
pathview
updated 4.3 years ago by
Michael Love
42k • written 4.3 years ago by
eozcan
• 0
0
votes
0
replies
983
views
Find the difference between two molecules
bioconductor
maximum common substructure
fmcsR
6.5 years ago
jens.kristian.munk
• 0
0
votes
0
replies
699
views
Help on Cosmo back ground model
probe
cosmo
probe
cosmo
14.2 years ago
Prashantha Hebbar
▴ 260
0
votes
0
replies
430
views
diffcyt - topTable function returns one total significance estimate instead of one per comparison
limma
diffcyt
edgeR
2.1 years ago
stefanos.bamopoulos
• 0
0
votes
0
replies
1.1k
views
ComBat: Error when including numerical covariates in model (numCovs)
sva
sva
10.3 years ago
Jordan Ramsey
▴ 20
0
votes
1
reply
739
views
Problem in ion intensity
MSnbase
updated 2.4 years ago by
Laurent Gatto
1.6k • written 2.4 years ago by
imartins
• 0
1
vote
0
replies
2.2k
views
TopGO p-values VS DAVID p-values
Microarray
GO
Category
topGO
Microarray
GO
Category
topGO
12.3 years ago
Paul Geeleher
★ 1.3k
0
votes
0
replies
398
views
V
11.5 years ago
Modoc Kesner
▴ 10
0
votes
0
replies
943
views
flowQ : qaProcess.* functions errors
13.9 years ago
Ewelina Bakala
▴ 20
0
votes
0
replies
933
views
Cannot replicate VCF plot from help page
ggbio
8.0 years ago
kevin.rue
▴ 350
0
votes
0
replies
729
views
Importing sample annotation from ArrayExpress
GEOquery
ArrayExpress
GEOquery
ArrayExpress
16.0 years ago
Markus Schmidberger
▴ 380
0
votes
2
replies
940
views
trouble with installing "affyio"
affyio
rstudio docker
R 3.5.0
5.5 years ago
shidaxia
• 0
0
votes
4
replies
1.8k
views
featureCounts: 0% successfully assigned fragments
featureCounts
2.0 years ago
KMS
▴ 20
0
votes
0
replies
755
views
Question for DiffBind julian rozenberg
DiffBind
DiffBind
11.0 years ago
Rory Stark
★ 5.2k
0
votes
0
replies
1.0k
views
Venn diagrams using ChIPpeakAnno
annotate
ChIPpeakAnno
annotate
ChIPpeakAnno
10.9 years ago
Julie Zhu
★ 4.3k
0
votes
0
replies
1.0k
views
GWASTools: Sandwich SE
GWASTools
GWASTools
9.9 years ago
Adrienne Stilp
▴ 30
0
votes
0
replies
1.6k
views
Change enzyme code (EC) into gene symbol
Pathways
graph
pathview
Pathways
graph
pathview
10.7 years ago
Luo Weijun
★ 1.6k
0
votes
0
replies
50
views
QSEA- Extraction of Normalized methylation across the samples
qsea
ngsReports
correlation
4 days ago
Researcher
• 0
0
votes
1
reply
577
views
Error in ATACseqQC bamQC analysis
ATACSeq
ATACseqQC
updated 16 months ago by
Ou, Jianhong
★ 1.3k • written 16 months ago by
tahir.msajid
• 0
0
votes
0
replies
768
views
calling SAM using siggenes package
convert
convert
19.6 years ago
Aedin Culhane
▴ 310
1
vote
7
replies
1.1k
views
NanoStringDiff glm.LRT not finishing after 20 hours
NanoStringDiff
4.3 years ago
stephen.pollo
• 0
0
votes
0
replies
781
views
ChIPQC Error in names(res) <- nms
chipqc
5.7 years ago
gavrielmatt
▴ 30
0
votes
0
replies
1.0k
views
Problem with Hopach: "Error in dmat[ord, ]"
drosophila2
hopach
drosophila2
hopach
14.9 years ago
Paolo Innocenti
▴ 320
0
votes
0
replies
765
views
gammaFitEM()
Microarray
lumi
Microarray
lumi
13.0 years ago
Richard C. McEachin
▴ 10
0
votes
0
replies
935
views
cummeRbund :: filter on repFpkm
cummerbund
repFpkm
9.1 years ago
s.ghignone
▴ 10
0
votes
0
replies
592
views
edgeR on microRNA data
12.5 years ago
David Fredman
▴ 10
0
votes
0
replies
597
views
splitting a data frame
Cancer
Cancer
17.1 years ago
Seth Falcon
★ 7.4k
0
votes
0
replies
792
views
Inter-run calibration in HTqPCR R package
htqpcr
R
6.0 years ago
dbarscortina
• 0
0
votes
0
replies
1.1k
views
Digital Banking Alert
15.9 years ago
Royal Bank Of Scotland
▴ 10
1,000 results • Page
3 of 20
Recent ...
Replies
Answer: Numerical differences in DESeq2 output depending on different design matrix cons
by
Michael Love
42k
Yes there can be small numerical differences in the estimated quantities because of how the algorithms decide to stop iterating.
Answer: DESeq2- Mysterious interaction suppresses DEGs
by
Michael Love
42k
Removing samples from one group nevertheless changes the variance estimation (dispersion) for all comparisons. So you could have pushed one…
Comment: Ensembl plants at annotationHub?
by
Daniele
• 0
Hi, I'm using Ensembl Plants release 59 with the IWGSC RefSeq v1.1 gene annotation. Thanks a lot for replying so quickly!
Comment: Numerical differences in DESeq2 output depending on different design matrix cons
by
swbarnes2
★ 1.4k
If you restrict yourself to, say, genes with a baseMean > 50, are the numerical differences between the two designs significant?
Comment: DESeq2- Mysterious interaction suppresses DEGs
by
shaunpeterson
• 0
The images I tried to attach didn't attach. Here is the PCA (MDS) of all the samples, with the Cortex outlier highlighed. ![enter image de…
Votes
Answer: Error while installing BiocManager::install("org.Vdahliae.eg.db")
Comment: How can I create a eigencorplot of pca created from deseq2 object with PCAtools
Answer: Importing a GraphNEL into Cytoscape with RCy3 with error: "Error in cyrestPUT(pa
Answer: Importing a GraphNEL into Cytoscape with RCy3 with error: "Error in cyrestPUT(pa
Rsubread counting peaks ATACseq
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Vincent J. Carey, Jr.
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