Showing : ATACSeqQC • reset
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Error with BSgenome, wanting to analyse non-model species with ATACseqQC
ATACseqQC
updated 11 weeks ago by 66k • written 11 weeks ago by • 0
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0
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137
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Issue with shiftGAlignmentsList() in ATACseqQC after updating
R ATACseqQC
12 weeks ago danalvoronov ▴ 10
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7
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703
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ATACseqQC shiftGAlignmentsList() problem
ATACseqQC ATACSeq
updated 12 weeks ago by ▴ 10 • written 6 months ago by • 0
0
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1
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595
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Error in ATACseqQC bamQC analysis
ATACSeq ATACseqQC
updated 16 months ago by ★ 1.3k • written 16 months ago by • 0
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0
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619
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[ATACseqQC] NA values in sigs makes heatmap not completed
ATACseqQC ATACSeq
2.2 years ago hyjforesight • 0
1
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7
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1.4k
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TSSEscore function in ATACseqQC package
ATACseqQC
2.3 years ago Liu Yu-Yu • 0
0
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3
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1.2k
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package for ATACseq data analysis
SequencingData ATACSeq ATACseqQC
updated 21 months ago by ★ 5.2k • written 2.6 years ago by ▴ 30
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466
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ATACseqQC function fragSizeDist returns error
fragSizeDist ATACseqQC
2.7 years ago xuyao15927402897 • 0
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0
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497
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NAs in TSSE for certain windows
ATACseqQC
2.8 years ago red_bricks ▴ 50
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2
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1.4k
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*** caught segfault *** address 0xffffffff9a378e20, cause 'memory not mapped'
ATACseqQC
3.0 years ago Nolan • 0
0
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9
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3.6k
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No peak corresponding to the nucleosome-free regions is observed in Fragment size distribution of ATAC-seq
ATACseqQC Fragmentsizedistribution ATAC-seq
3.1 years ago Xiaojie Cheng • 0
1
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4
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1.2k
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How to use a fimo BED output as GRanges object in factorFootprints from ATACseqQC
ATACseqQC
updated 3.7 years ago by ★ 4.3k • written 3.7 years ago by ▴ 10
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4
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2.0k
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ATACseqQC R package for QC scores (TSS, FRIP, NFR, IDR)
ATACseqQC atacseq R
updated 3.8 years ago by ★ 1.3k • written 3.8 years ago by • 0
1
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2
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9.4k
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Interpreting TSS Enrichment Score Summary
atacseq atacseqqc tss enrichment
updated 3.8 years ago by ★ 1.3k • written 3.8 years ago by • 0
1
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4
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984
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Subsampling when adjusting the read start sites in the ATACseqQC guide
atacseqqc r
3.8 years ago Arpi Beshlikyan • 0
0
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5
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1.5k
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ATACSeqQC - error when splitting files using mm10
atacseqqc atac-seq R bioconductor rsamtools
updated 4.0 years ago by ★ 3.9k • written 4.0 years ago by • 0
0
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5
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1.7k
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ATACseqQC installation fails at shiny step
ATACseqQC
updated 4.7 years ago by 66k • written 4.7 years ago by • 0
0
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2
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1.0k
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factorFootprints, bindingSites and Profile.segmentation
ATACSeqQC factorFootprints
updated 4.8 years ago by ★ 4.3k • written 4.8 years ago by • 0
1
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2
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1.4k
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ATACseqQC function bamSplit returns error when input .bam is from mouse
ATACseqQC
4.8 years ago beiting ▴ 30
1
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11
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2.4k
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ATAC-QC shiftGAlignmentsList function
ATAC-seq ATACseqQC
updated 4.9 years ago by ★ 4.3k • written 4.9 years ago by • 0
0
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7
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1.6k
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ATACseqQC splitGAlignmentsByCut: strand values must be in '+' '-' '*'
ATACseqQC R
updated 4.9 years ago by ★ 4.3k • written 4.9 years ago by • 0
0
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1
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1.0k
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ATAC-QC fragSizeDist function
ATAC-seq ATACseqQC
updated 4.9 years ago by ★ 4.3k • written 4.9 years ago by • 0
0
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7
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1.8k
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ATACseqQC shiftGAlignmentsList leads to (all(elementNROWS)>3) is not TRUE error
ATACseqQC ATAC ATACseq software error Tutorial
updated 4.9 years ago by ★ 13k • written 4.9 years ago by • 0
0
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6
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1.9k
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atacseqQC error while splittin the bamfile
ATACseqQC ATAC-seq error split bam file
updated 5.1 years ago by • 0 • written 5.1 years ago by ▴ 10
0
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0
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791
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Enough cell number or not based on library complexity evaluation by ATACseqQC?
ATACseqQC ATAC-Seq Library complexity estimateLibComplexity
5.2 years ago Gary ▴ 20
2
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5
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1.5k
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The meaning of results produced by the bamQC function implemented in the ATACseqQC
ATACseqQC bamQC ATAC-Seq totalQNAMEs MAPQ
updated 5.3 years ago by ★ 4.3k • written 5.3 years ago by ▴ 20
11
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21
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5.2k
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How about our ATAC-Seq data quality analyzed by ATACseqQC
ATACseqQC ATAC-Seq quality analysis fragment size distribution library complexity
updated 5.3 years ago by ★ 4.3k • written 5.3 years ago by ▴ 20
0
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3
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1.0k
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Compare the DNA footprinting between different samples when using ATACseqQC
atacseqqc
updated 5.8 years ago by ★ 1.3k • written 5.9 years ago by ▴ 10
0
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9
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1.6k
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use factorFootprints function in ATACseqQC to get DNA footprinting for certain gene region
ATACseqQC
updated 5.9 years ago by ★ 4.3k • written 5.9 years ago by ▴ 10
0
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1
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1.0k
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ATACseqQC: a few questions
ATACseqQC
updated 5.9 years ago by ★ 4.3k • written 5.9 years ago by • 0
0
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1
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925
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ATACseqQC questions in R language
atacseqqc
updated 6.0 years ago by ★ 1.3k • written 6.0 years ago by • 0
0
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1
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1.7k
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Issue installing packages ATACseqQC and GO.db
GO.db biocinstaller package installation atacseqqc
updated 6.2 years ago by ★ 1.3k • written 6.2 years ago by • 0
0
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7
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2.2k
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ATACseqQC memory overflow issue
atac-seq software error atacseqqc
updated 6.3 years ago by • 0 • written 6.3 years ago by ▴ 10
0
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2
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1.1k
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ATACseqQC needs too much memory
ATACseqQC
updated 6.5 years ago by ★ 4.3k • written 6.5 years ago by • 0
5
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9
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3.9k
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mm10 phastCons data for use with ATACseqQC
ATACseqQC bsgenome phastcons rtracklayer
updated 7.0 years ago by ★ 1.3k • written 7.0 years ago by ▴ 10
35 results • Page 1 of 1
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Comment: Why is longestConsecutive() depreceated in version 2.72 (BioC version 3.19)? by ATpoint ★ 4.2k
I don't have an answer to the "why" but maybe a simple reimplemention will do: ```r seqs <- c("ATCATCGTATCAAAGTC", "AAAACGTATCAAAGTC", "TG…
Comment: How to add Ensembl ids after Pseudobulk analysis by DESeq2 by Guido Hooiveld ★ 4.0k
After checking `?DESeqDataSetFromMatrix` note this information: arguments provided to SummarizedExperiment including rowRanges and met…
Answer: Error in gseDO function by Guido Hooiveld ★ 4.0k
Yes, you are missing something. :-) For a GSEA you will need to use as input all genes that you are analyzing; these genes should be ran…
Comment: GSVA function by Robert Castelo ★ 3.3k
No, negative values may occur after log transformation when the `log(x)` is taken from a positive number `x with 0 < x < 1`, and therefore …
Comment: conumee with Infinium MethylationEPIC v2.0 by sgomez • 0
Hi Max, Could you try this? https://support.bioconductor.org/p/9136138/#9136840
Votes
A: Comparison between two different group's pathway analysis results
DiffBind Batch Effect
A: DiffBind Batch Effect
A: DiffBind Batch Effect
C: DiffBind Batch Effect
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