Log In
Sign Up
about
faq
Ask a question
Latest
News
Jobs
Tutorials
Tags
Users
New Post
Latest
News
Jobs
Tutorials
Tags
Users
Log In
Sign Up
About
Limit
all time
today
this week
this month
this year
Unanswered
All posts
Sort
Update
Answers
Bookmarks
Creation
Replies
Rank
Views
Votes
Showing :
BSSeq
•
reset
4
votes
9
replies
1.8k
views
Memory errors using read.bismark?
dmrseq
bsseq
21 months ago • updated 20 months ago
Juan Higareda
• 0
0
votes
1
reply
975
views
No output from read.bismark with bismark cov.files
bsseq
methylation
updated 21 months ago by
James W. MacDonald
68k • written 21 months ago by
ja569116
• 0
6
votes
5
replies
2.3k
views
error message when I use the bsseq read.bismark command to read a genome wide cytosine report generated by bismark.
bsseq
updated 2.3 years ago by
Peter Hickey
▴ 760 • written 2.4 years ago by
richardallenfriedmanbrooklyn
▴ 30
1
vote
3
replies
3.2k
views
read.bismark() ->Error in manager$availability[[as.character(result$node)]] <- TRUE : wrong args for environment subassignment
methylSig
bsseq
updated 3.3 years ago by
Peter Hickey
▴ 760 • written 3.3 years ago by
carla.geiger
• 0
0
votes
2
replies
1.5k
views
Locating nearest genes in RRBS analysis
hiAnnotator
bsseq
DifferentialMethylation
edgeR
RRBSdata
3.7 years ago • updated 3.6 years ago
Mageiros
• 0
0
votes
1
reply
2.5k
views
Gene level methylation values
methylation
methylKit
bsseq
updated 4.2 years ago by
alex.gos90
▴ 10 • written 4.5 years ago by
Arindam
▴ 80
0
votes
0
replies
1.2k
views
DSS smoothing RRBS and strand collapse
DSS
BSSeq
5.8 years ago
stephanie.rialle
• 0
0
votes
1
reply
1.2k
views
Varying results from DSS when specifying different BSobj
DSS
DSS-single
bsseq
updated 6.2 years ago by
James W. MacDonald
68k • written 6.2 years ago by
varunorama
• 0
0
votes
3
replies
1.8k
views
Determination of Hypo- or Hyper- methylation
dmrseq
bsseq
updated 7.6 years ago by
James W. MacDonald
68k • written 7.6 years ago by
Bruno Verstraeten
• 0
1
vote
2
replies
1.5k
views
Request to remove requirement for gr to have widths 1 in BSseq constructor
bsseq
r
package
updated 7.6 years ago by
emmascottgm
• 0 • written 7.6 years ago by
rcavalca
▴ 140
7
votes
5
replies
2.6k
views
Strange error in bsseq when trying to assign seqinfo
bsseq
genomeinfodb
genomicranges
seqinfo
written 7.6 years ago by
rcavalca
▴ 140
0
votes
6
replies
2.6k
views
BSmooth 'names' attribute must be the same length as the vector
bsseq
bsmooth
8.2 years ago
ravi.tharakan
• 0
1
vote
6
replies
2.4k
views
Unusually long running times for getMeth function since latest release
bsseq
delayedarray
updated 8.5 years ago by
Peter Hickey
▴ 760 • written 8.5 years ago by
Alejandro Reyes
★ 1.9k
2
votes
3
replies
2.3k
views
bsseq combineList: how to get an HDF5Array-backed object as return value?
bsseq
updated 8.6 years ago by
Peter Hickey
▴ 760 • written 8.6 years ago by
Martin Aryee
▴ 20
0
votes
4
replies
2.4k
views
Error while smoothing BS-seq data with bsseq
bsseq
updated 8.7 years ago by
Nikolay.Oskolkov
• 0 • written 10.3 years ago by
andreucat91
• 0
0
votes
6
replies
2.8k
views
BSmooth error during the smoothing step for a subset of files
bsseq
bsmooth
updated 8.8 years ago by
Peter Hickey
▴ 760 • written 8.8 years ago by
brandon.le
• 0
0
votes
1
reply
1.7k
views
warning message with BSseq function
bsseq
updated 8.9 years ago by
Kasper Daniel Hansen
★ 6.5k • written 8.9 years ago by
marie.trijau
• 0
1
vote
3
replies
1.9k
views
BSmooth: mclapply error when smoothing using BSmooth
bsseq
bsmooth
9.0 years ago
zuupcat
• 0
0
votes
0
replies
1.3k
views
A few questions about BSseq package
bsseq
9.1 years ago
Stephen
• 0
0
votes
0
replies
1.4k
views
Does bsseq package work with technical replicates?
bsseq
WGBS
9.1 years ago
Welliton de Souza
▴ 70
4
votes
2
replies
2.0k
views
Bounded Regression with Limma for RRBS?
limma
rrbs
bsseq
updated 9.6 years ago by
Aaron Lun
★ 29k • written 9.6 years ago by
nhejazi
• 0
0
votes
3
replies
2.4k
views
Is there any way to set bsseq object as 'smoothed'?
bsseq
bisulfite
9.7 years ago
biohack92
• 0
1
vote
3
replies
2.4k
views
bsseq BSmooth error
bsseq
9.8 years ago
enricoferrero
▴ 680
7
votes
11
replies
5.0k
views
t-statistic cutoff for finding DMRs with bsseq
bsseq
dmr
ttest
pvalue
updated 9.9 years ago by
James W. MacDonald
68k • written 9.9 years ago by
enricoferrero
▴ 680
1
vote
0
replies
2.1k
views
Multiple linear regression model for DMR detection?
methylation
linear model
dmr
bsseq
biseq
10.1 years ago
enricoferrero
▴ 680
6
votes
14
replies
6.7k
views
How to correctly import Bismark coverage files into bsseq?
bsseq
bismark
methylation
10.1 years ago
enricoferrero
▴ 680
0
votes
0
replies
2.3k
views
Job:
Bioinformatics Data Analyst - IMP/IMBA Vienna
chipseq
atac-seq
gro-seq
bsseq
rnaseq
Job
10.2 years ago
Jaritz,Markus
▴ 20
1
vote
2
replies
3.2k
views
BS-seq differential methylation analysis using continuous variable
dmr
methylation
deseq2
bsseq
biseq
updated 10.2 years ago by
Kasper Daniel Hansen
★ 6.5k • written 10.2 years ago by
enricoferrero
▴ 680
0
votes
2
replies
2.6k
views
Issue with SummarizedExperiment thru DSS::makeBSseqData
DSS
bsseq
summarizedexperiment
10.3 years ago
Tim Peters
▴ 230
0
votes
4
replies
3.3k
views
Error using Bsmooth.tstat due to NAs
Coverage
bsseq
updated 2.2 years ago by
Adam
• 0 • written 11.3 years ago by
Guest User
★ 13k
0
votes
3
replies
3.2k
views
How to handle BSsmooth.tstat for single replicate samples? Error: need at least two non-NA values to interpolate
bsseq
Bsmooth
updated 2.2 years ago by
Adam
• 0 • written 10.8 years ago by
unmeshj
• 0
0
votes
2
replies
2.4k
views
bsmooth and bsseq for RRBS
bsseq
bsseq
updated 12.0 years ago by
Tim Triche
★ 4.2k • written 12.0 years ago by
Guest User
★ 13k
1
vote
2
replies
1.8k
views
dmrFinder error
bsseq
bsseq
updated 12.2 years ago by
Kasper Daniel Hansen
★ 6.5k • written 12.2 years ago by
Guest User
★ 13k
0
votes
1
reply
1.5k
views
bsseq in devel
bsseq
bsseq
updated 12.5 years ago by
Tim Triche
★ 4.2k • written 12.5 years ago by
Kasper Daniel Hansen
★ 6.5k
0
votes
2
replies
2.5k
views
bsseq and BSmooth with RRBS
Sequencing
bsseq
Sequencing
bsseq
updated 12.9 years ago by
Kasper Daniel Hansen
★ 6.5k • written 12.9 years ago by
Alex Gutteridge
▴ 650
0
votes
1
reply
1.8k
views
Minimal input data format for bsseq
Sequencing
Alignment
bsseq
Sequencing
Alignment
bsseq
updated 13.0 years ago by
Kasper Daniel Hansen
★ 6.5k • written 13.0 years ago by
Martin Aryee
▴ 20
0
votes
0
replies
1.4k
views
[package announcement] bumphunter
charm
minfi
bsseq
bumphunter
charm
minfi
bsseq
bumphunter
13.1 years ago
Kasper Daniel Hansen
★ 6.5k
0
votes
0
replies
1.8k
views
Package announcement: bsseq
Sequencing
Alignment
Cancer
Colon
bsseq
Sequencing
Alignment
Cancer
Colon
bsseq
13.4 years ago
Kasper Daniel Hansen
★ 6.5k
38 results • Page
1 of 1
Recent ...
Replies
Comment: How to do differential expresion across time serise with edgeR?
by
petergrahamclark
▴ 10
The use case is kinetic model parameterisation. I'm actually a systems biologist not a bioinformatician. (which is why I'm struggling here)…
Comment: Opportunity to host EuroBioC2026 Preconference workshops!
by
TikTsokaasocissalpc
• 0
Just like attending workshops helps you improve skills in a field, playing 8 Ball Pool helps sharpen your strategy and precision. You can d…
Comment: Upcoming Ensembl API and data access changes - new blog post available
by
TikTsokaasocissalpc
• 0
Thanks for sharing this update. Clear migration timelines and documentation are essential for learners and researchers alike. In healthcare…
Comment: ATACseq rudimentary questions
by
4747
• 0
Thank you so much for being detailed, all makes sense now
Answer: How to do differential expresion across time serise with edgeR?
by
Gordon Smyth
53k
You actually haven't done any DE analysis at all, you've just selected for genes with either zero or large D0 counts. Another issue is tha…
Votes
Answer: How to install packages such as TCGAbiolinks, SumarizedExperiment?
A: limma-voom duplicateCorrelation once or twice, difference?
A: limma: comparison of repeat measurements - blocking or within-subject correlatio
Answer: DecideTest vs topTAGs in edgeR
A: LIMMA time series spline model.matrix design setup
Awards
• All
Popular Question
to
Gordon Smyth
53k
Popular Question
to
ZheFrench
▴ 60
Popular Question
to
shepherl
4.2k
Popular Question
to
Hervé Pagès
16k
Popular Question
to
Vincent J. Carey, Jr.
6.7k
Locations
• All
United States,
19 minutes ago
United States,
1 hour ago
Barcelona, Spain,
1 hour ago
United States,
2 hours ago
United Kingdom,
2 hours ago
Traffic: 684 users visited in the last hour
Content
Search
Users
Tags
Badges
Help
About
FAQ
Access
RSS
API
Stats
Use of this site constitutes acceptance of our
User Agreement and Privacy Policy
.
Powered by the
version 2.3.6