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Bioc-devel
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reset
1
vote
2
replies
1.6k
views
Segmentation Fault with development versions of R, Bioconductor, and DropletUtils when processing output of CellRanger 3.0.2
DropletUtils
Bioc-devel
5.9 years ago
Matthew Thornton
▴ 380
1
vote
5
replies
1.5k
views
[DEVELOPMENT] Trying to use development version of Bioconductor, needs R 3.6?...
developers
bioc-devel
6.3 years ago
Casper van Mourik
• 0
0
votes
2
replies
1.6k
views
Circular dependencies between data and software packages: how best to avoid
developers
bioc-devel
package development
circular dependencies
updated 6.4 years ago by
shepherl
4.1k • written 6.4 years ago by
Tim Triche
★ 4.2k
3
votes
1
reply
2.4k
views
News:
Latin American BioC Developers Workshop 2018
bioconductor
developers
bioc-devel
News
6.8 years ago
Alejandro Reyes
★ 1.9k
6
votes
3
replies
3.1k
views
How to solve "WARNING: Add non-empty \value" with roxygen tags
bioccheck
roxygen2
warning
bioc-devel
package development
updated 7.3 years ago by
Lluís Revilla Sancho
▴ 760 • written 7.3 years ago by
Paul Brennan
▴ 10
0
votes
0
replies
2.5k
views
Tutorial:
Using Subversion to update /devel branch of Bioconductor package
subversion
bioc-devel
package development
usedevel
Tutorial
7.5 years ago
Bohdan Khomtchouk
▴ 10
3
votes
2
replies
1.3k
views
Changing lead developer for existing package
developers
bioc-devel
updated 7.9 years ago by
Martin Morgan
25k • written 7.9 years ago by
mlbendall
• 0
2
votes
8
replies
4.1k
views
Unable to load/install rtracklayer (v1.33.2) on OS X (possibly SSL-related?)
rtracklayer
bioc-devel
ssl
openssl
updated 8.7 years ago by
Michael Lawrence
★ 11k • written 8.7 years ago by
Peter Hickey
▴ 750
1
vote
3
replies
1.9k
views
Are there any bioconductor github mirrors for data packages?
software
bioc-devel
developers
R
updated 9.3 years ago by
Dan Tenenbaum
★ 8.2k • written 9.3 years ago by
MarcinKosiński
• 0
3
votes
6
replies
2.5k
views
Bioconductor Docker Development container
docker
bioc-devel
updated 9.7 years ago by
Dan Tenenbaum
★ 8.2k • written 9.7 years ago by
Nathan Sheffield
▴ 10
5
votes
3
replies
1.9k
views
BiocCheck: REQUIRED: vignette sources in vignettes/ directory (for custom vignettebuilder)
package
bioconductor
bioc-devel
developers
9.8 years ago
flying-sheep
▴ 10
0
votes
2
replies
2.4k
views
Error reading vcf converted from bed file
readvcf
plink
file conversion
bed
bioc-devel
9.9 years ago
mjsduncan
• 0
0
votes
1
reply
2.2k
views
installation of GenomicRanges package in Rdevel fails
installation
bioc-devel
updated 10.4 years ago by
Martin Morgan
25k • written 10.4 years ago by
Tiphaine Martin
▴ 40
1
vote
1
reply
1.9k
views
Using hash packages with package:rtracklayer, GenomicRanges, Gviz, IRanges, biomaRt conflict
software error
bioc-devel
updated 10.4 years ago by
Martin Morgan
25k • written 10.4 years ago by
Tiphaine Martin
▴ 40
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Comment: How to formulate 2 factor nested design in DESeq2
by
Mariane
• 0
Hi JK Kim, I'm having a problem similar to the one you reported. Could you please tell me how you solved this problem? Thanks
Comment: batch effect removal for agilent microarray data
by
gaye.yilmaz
• 0
Thank you
Answer: Pathview visualisation not including positive log2 fold changes
by
James W. MacDonald
68k
Without providing a self-contained example, nobody can tell you if/where you went wrong. Since you get a KEGG pathway with some of the gene…
Comment: Differential variance analysis - can i use deseq2
by
Marwan
• 0
Thanks Michael for your answer, i didnt mean to use Deseq2 directly for the variance testing, but more like asking if using the (VST) data…
Answer: Differential variance analysis - can i use deseq2
by
Michael Love
43k
We don't have a test of differential variance but other Bioconductor packages can, check similar posts (even on the right side bar) or use …
Votes
Answer: Differential expression of protein coding ENSGs (Ensembl IDs) | When to biomaRt?
Suggesting changing the "reply-to" field to the mailing list address.
Answer: UniProt.ws query for single UniRef90 ID takes several minutes
A: How to extract DESeq2 results for an interaction design
Comment: how should I apply "cpg.annotate" to TCGA methylation data in hg38 for HM450K?
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