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Bioc-devel
•
reset
1
vote
2
replies
1.9k
views
Segmentation Fault with development versions of R, Bioconductor, and DropletUtils when processing output of CellRanger 3.0.2
DropletUtils
Bioc-devel
6.8 years ago
Matthew Thornton
▴ 390
1
vote
5
replies
1.8k
views
[DEVELOPMENT] Trying to use development version of Bioconductor, needs R 3.6?...
developers
bioc-devel
7.1 years ago
Casper van Mourik
• 0
0
votes
2
replies
1.9k
views
Circular dependencies between data and software packages: how best to avoid
developers
bioc-devel
package development
circular dependencies
updated 7.2 years ago by
shepherl
4.2k • written 7.3 years ago by
Tim Triche
★ 4.2k
3
votes
1
reply
2.8k
views
News:
Latin American BioC Developers Workshop 2018
bioconductor
developers
bioc-devel
News
7.7 years ago
Alejandro Reyes
★ 1.9k
6
votes
3
replies
3.6k
views
How to solve "WARNING: Add non-empty \value" with roxygen tags
bioccheck
roxygen2
warning
bioc-devel
package development
updated 8.2 years ago by
Lluís Revilla Sancho
▴ 760 • written 8.2 years ago by
Paul Brennan
▴ 10
0
votes
0
replies
2.9k
views
Tutorial:
Using Subversion to update /devel branch of Bioconductor package
subversion
bioc-devel
package development
usedevel
Tutorial
8.4 years ago
Bohdan Khomtchouk
▴ 10
3
votes
2
replies
1.6k
views
Changing lead developer for existing package
developers
bioc-devel
updated 8.7 years ago by
Martin Morgan
25k • written 8.7 years ago by
mlbendall
• 0
2
votes
8
replies
4.6k
views
Unable to load/install rtracklayer (v1.33.2) on OS X (possibly SSL-related?)
rtracklayer
bioc-devel
ssl
openssl
updated 9.6 years ago by
Michael Lawrence
★ 11k • written 9.6 years ago by
Peter Hickey
▴ 760
1
vote
3
replies
2.2k
views
Are there any bioconductor github mirrors for data packages?
software
bioc-devel
developers
R
updated 10.2 years ago by
Dan Tenenbaum
★ 8.2k • written 10.2 years ago by
MarcinKosiński
• 0
3
votes
6
replies
3.0k
views
Bioconductor Docker Development container
docker
bioc-devel
updated 10.6 years ago by
Dan Tenenbaum
★ 8.2k • written 10.6 years ago by
Nathan Sheffield
▴ 10
5
votes
3
replies
2.2k
views
BiocCheck: REQUIRED: vignette sources in vignettes/ directory (for custom vignettebuilder)
package
bioconductor
bioc-devel
developers
10.6 years ago
flying-sheep
▴ 10
0
votes
2
replies
2.7k
views
Error reading vcf converted from bed file
readvcf
plink
file conversion
bed
bioc-devel
10.8 years ago
mjsduncan
• 0
0
votes
1
reply
2.4k
views
installation of GenomicRanges package in Rdevel fails
installation
bioc-devel
updated 11.2 years ago by
Martin Morgan
25k • written 11.2 years ago by
Tiphaine Martin
▴ 40
1
vote
1
reply
2.1k
views
Using hash packages with package:rtracklayer, GenomicRanges, Gviz, IRanges, biomaRt conflict
software error
bioc-devel
updated 11.2 years ago by
Martin Morgan
25k • written 11.2 years ago by
Tiphaine Martin
▴ 40
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Comment: Guitar R package requires update due to dependency GenomicFeatures
by
ferran.llobet.cabau
▴ 10
Thank you @seandavi for your feedback. I followed your recommendations and generated a [pull request][1] including the fix for this issue…
Comment: Ensembl plants at annotationHub?
by
Guido Hooiveld
★ 4.1k
Hope you don't mind I am not Johannes... ;-) Note that you nowadays can generate these yourselves using the `docker` image Johannes made av…
Comment: How does contrasts.fit do in limma to extract comparisons with a model having in
by
jtsy6383
• 0
Thanks for the reminder about DiffVar (for that project I ended up using GAMLSS in the end and haven't touched DiffVar since) and the alter…
Comment: Ensembl plants at annotationHub?
by
jwp48
• 0
Dear Johannes, Would it be possible to generate a EnsDb for the newest Medicago V5 genome release? Medicago truncatula A17 r5.0 This woul…
Answer: please provide a BibTeX citation for "Advanced Single-Cell Analysis with Biocond
by
Ludwig Geistlinger
▴ 80
When referring to the OSCA book including individual sub-books please cite the OSCA paper: Amezquita, R.A., Lun, A.T.L., Becht, E. et a…
Votes
Comment: Guitar R package requires update due to dependency GenomicFeatures
A: how to control age and gender effect in expression data using DESeq2
A: how to control age and gender effect in expression data using DESeq2
how to control age and gender effect in expression data using DESeq2
Answer: please provide a BibTeX citation for "Advanced Single-Cell Analysis with Biocond
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