Log In
Sign Up
about
faq
Ask a question
Latest
News
Jobs
Tutorials
Tags
Users
New Post
Latest
News
Jobs
Tutorials
Tags
Users
Log In
Sign Up
About
Limit
all time
today
this week
this month
this year
Unanswered
All posts
Sort
Update
Answers
Bookmarks
Creation
Replies
Rank
Views
Votes
Showing :
Biomart
•
reset
4
votes
5
replies
4.1k
views
biomart getLDS giving errors.
biomaRt
3.5 years ago
hnthirim
▴ 10
8
votes
5
replies
11k
views
biomaRt server error, and mirrors do not help
ensembl
biomaRt
R
updated 11 months ago by
Ke
• 0 • written 3.5 years ago by
kieran.short
▴ 50
2
votes
2
replies
4.5k
views
Problems with biomaRt's getLDS
biomaRt
updated 3.4 years ago by
Yuan_zhen
• 0 • written 3.5 years ago by
dr
▴ 10
22
votes
15
replies
11k
views
biomaRt error unable to fix: need help troubleshooting
biomaRt
RNASeqData
R
updated 23 months ago by
Marie
▴ 10 • written 3.5 years ago by
Dina
▴ 50
2
votes
8
replies
4.0k
views
biomaRt : No lock file for BiocFileCache
BiocFileCache
biomaRt
updated 3.5 years ago by
Martin Morgan
25k • written 3.5 years ago by
ZheFrench
▴ 60
2
votes
0
replies
1.1k
views
News:
News:Ensembl 106 has just been released!
ensembl
biomaRt
ensembldb
3.5 years ago
Benjamin
▴ 30
1
vote
7
replies
7.3k
views
Problems Installing biomaRt
biomaRt
updated 23 months ago by
James W. MacDonald
68k • written 3.5 years ago by
ksci
▴ 20
2
votes
5
replies
2.5k
views
from kallisto to deseq2 analysis
biomaRt
DESeq2
tximport
3.7 years ago
Marianna
▴ 20
2
votes
3
replies
1.4k
views
Again, query error when trying to retrieve attributes from Phytozome via BiomaRt
Zea_mays
Attributes
biomaRt
Phytozome
updated 3.7 years ago by
SK
• 0 • written 3.8 years ago by
s.k.tepler
▴ 10
0
votes
3
replies
2.6k
views
biomaRT getBM() get stuck
biomaRt
getbm
ensembl
updated 3.8 years ago by
Mike Smith
★ 6.6k • written 3.8 years ago by
Ariel Simon
• 0
0
votes
1
reply
1.3k
views
Ensembl dataset version
tximport
rna
rnaseqGene
biomaRt
updated 3.8 years ago by
ATpoint
★ 5.0k • written 3.8 years ago by
st3472
• 0
0
votes
2
replies
2.3k
views
Can't convert dog ensembl IDs into gene names
biomaRt
ensembldb
updated 3.8 years ago by
ATpoint
★ 5.0k • written 3.8 years ago by
4214811
• 0
1
vote
0
replies
1.2k
views
News:
Ensembl 105 has just been released!
ensembl
biomaRt
ensembldb
3.9 years ago
mchakiachvili
▴ 20
0
votes
1
reply
1.7k
views
Calculating dn/ds ratios
biomaRt
updated 3.9 years ago by
Mike Smith
★ 6.6k • written 3.9 years ago by
morgantom1221
• 0
0
votes
2
replies
1.1k
views
Why does biomart have multiple positions for the same gene
biomaRt
3.9 years ago
adeler001
• 0
0
votes
1
reply
806
views
biomaRt query interrupted "expected a character string of length 1."
biomaRt
updated 3.9 years ago by
James W. MacDonald
68k • written 3.9 years ago by
alexandre.raposo
• 0
0
votes
1
reply
1.5k
views
How to get Cytogenetic band for muscles gene by using Biomart or other tools in R
Annotation
biomaRt
ensembldb
written 3.9 years ago by
Lillian
• 0
1
vote
2
replies
1.5k
views
biomaRt connection error
biomaRt
updated 3.9 years ago by
Mike Smith
★ 6.6k • written 3.9 years ago by
ATpoint
★ 5.0k
0
votes
8
replies
2.2k
views
Annotating DESeq2 Differential Expression Results
biomaRt
DESeq2
3.9 years ago
adeler001
• 0
0
votes
0
replies
1.3k
views
Error with getBM: 'The query to the BioMart webservice returned an invalid result.'
process
annotationTools
AnnotationFilter
Annotation
biomaRt
3.9 years ago
Shane
• 0
0
votes
3
replies
1.6k
views
ENSEMBL BIOMART INTERFACE DOWN?
biomaRt
updated 4.0 years ago by
Mike Smith
★ 6.6k • written 4.0 years ago by
NVSSJ
• 0
2
votes
1
reply
3.7k
views
Specify hg19 in using biomaRt getBM function
biomaRt
biom
updated 4.0 years ago by
James W. MacDonald
68k • written 4.0 years ago by
lei.shang
• 0
1
vote
3
replies
1.4k
views
useEnsemblGenomes not found
biomaRt
4.0 years ago
lessismore
▴ 20
2
votes
3
replies
2.5k
views
biomart query in R is not matching ensembl website - missing results
ensembldb
biomaRt
updated 4.0 years ago by
Mike Smith
★ 6.6k • written 4.0 years ago by
Alice
• 0
4
votes
4
replies
2.5k
views
biomaRt error: database disk image is malformed
biomaRt
updated 2.4 years ago by
Emile
• 0 • written 4.0 years ago by
victorcampos1995
▴ 10
0
votes
1
reply
4.9k
views
Error in curl; timeout when using biomaRt
biomaRt
bioma
updated 4.1 years ago by
Mike Smith
★ 6.6k • written 4.1 years ago by
analeonpalacio
▴ 10
0
votes
1
reply
2.4k
views
Retrieve isoform sequences for a protein from UniProt
UniProt.ws
biomaRt
updated 4.1 years ago by
Mike Smith
★ 6.6k • written 4.1 years ago by
sgupt46
▴ 10
0
votes
2
replies
1.7k
views
Ensembl archive challenges
biomaRt
updated 4.1 years ago by
Mike Smith
★ 6.6k • written 4.1 years ago by
yunadal
• 0
1
vote
1
reply
2.6k
views
Error in curl; timeout when using biomaRt
biomaRt
curl
timeout
getBM
Bioconductor
updated 4.2 years ago by
swbarnes2
★ 1.4k • written 4.2 years ago by
nlin0907
• 0
0
votes
0
replies
950
views
getGFFSet function CRASHES R session
getGFF
NCBI
biomartr
biomaRt
4.2 years ago
Matan G.
▴ 60
2
votes
6
replies
2.1k
views
Biomart's getBM returns no genes for an existing GO-term in grch38, and less then expected in grch37
GO
biomaRt
updated 4.2 years ago by
Mike Smith
★ 6.6k • written 4.2 years ago by
A
• 0
1
vote
2
replies
1.7k
views
What are these genes ? [How to get Ensembl IDs for them]
AnnotationDbi
biomaRt
updated 4.2 years ago by
abf
▴ 30 • written 4.2 years ago by
prabin.dm
• 0
0
votes
6
replies
2.7k
views
Getting paralogus genes from biomart for mouse
biomart
biomaRt
Ensembl
updated 4.2 years ago by
Kevin Blighe
★ 4.0k • written 4.2 years ago by
hemantcnaik
• 0
2
votes
8
replies
3.3k
views
error in getBM (biomaRt): "error: no such table: metadata"
biomaRt
software error
updated 4.2 years ago by
Mike Smith
★ 6.6k • written 5.4 years ago by
JINYI
• 0
1
vote
7
replies
6.0k
views
Using R BioMart getting orthologus genes between two species
biomaRt
updated 4.2 years ago by
Kevin Blighe
★ 4.0k • written 4.2 years ago by
hemantcnaik
• 0
0
votes
3
replies
2.3k
views
How to correlate bp and Chr columns in the corresponding RSID column?
biomaRt
updated 4.3 years ago by
James W. MacDonald
68k • written 4.3 years ago by
iago.junger
• 0
0
votes
2
replies
1.5k
views
Can't retrieve upstream flank (biomaRt)
biomaRt
4.3 years ago
Pete
• 0
5
votes
5
replies
6.3k
views
BiomaRt connection error: Could not connect to mysql database ensembl_mart_104
biomaRt
connection
sql
updated 4.4 years ago by
Joan Miró
▴ 80 • written 4.4 years ago by
Anand
▴ 10
0
votes
1
reply
1.1k
views
biomaRt - rice genes database not working
biomaRt
updated 4.4 years ago by
swbarnes2
★ 1.4k • written 4.4 years ago by
XUEPING
• 0
4
votes
9
replies
4.7k
views
biomaRt - getBM; Error with obtaining a dataset from getBM() function
biomaRt
error
getBM
updated 4.4 years ago by
Mike Smith
★ 6.6k • written 4.7 years ago by
Zen
▴ 20
6
votes
6
replies
3.5k
views
Weird output of biomaRt R package querying Ensembl IDs (hg19/grch37) to retrieve gene symbols
biomaRt
annnotation
RNASeq
AnnotationDbi
4.4 years ago
svlachavas
▴ 840
1
vote
0
replies
1.4k
views
News:
Ensembl 104 has just been released!
ensembldb
biomaRt
4.5 years ago
mchakiachvili
▴ 20
2
votes
6
replies
2.4k
views
BiomaRt getBM Error when converting from Ensemble to RNACentral IDs
biomaRt
written 4.5 years ago by
Michael
• 0
2
votes
3
replies
2.3k
views
Ensemble site connection error
biomaRt
updated 4.5 years ago by
Kevin Blighe
★ 4.0k • written 4.5 years ago by
Makoto
▴ 10
4
votes
2
replies
1.4k
views
Biomart Errors
biomaRt
4.5 years ago
Dr. Connie Brett
▴ 20
1
vote
2
replies
3.1k
views
BiomaRt conversion
biomaRt
4.6 years ago • updated 4.5 years ago
gwendal.lazennec
• 0
2
votes
1
reply
2.9k
views
Retrieve gene description with ensembldb
biomaRt
ensembldb
AnnotationData
updated 4.5 years ago by
Johannes Rainer
★ 2.1k • written 4.5 years ago by
António Miguel de Jesus Domingues
▴ 510
0
votes
3
replies
6.8k
views
Convert Agilent Probe ID to gene IDs/Symbols
AnnotationHub
biomaRt
updated 3.2 years ago by
alvea2008667
• 0 • written 4.6 years ago by
rohitsatyam102
▴ 20
0
votes
2
replies
5.9k
views
How to solve operation timed out with biomaRt
biomaRt
updated 3.5 years ago by
Liling
• 0 • written 4.6 years ago by
Federica
▴ 10
0
votes
1
reply
1.4k
views
Error in UseMethod("filter_") for RIPSeeker package
biomaRt
Bioconductor-RIPSeeker
updated 4.6 years ago by
Mike Smith
★ 6.6k • written 4.6 years ago by
Yongqing
• 0
1,081 results • Page
3 of 22
Recent ...
Replies
Comment: Best practice for handling large data (matrix with >2^31-1 non-zero elements) in
by
James W. MacDonald
68k
Oh. ``` > z <- read10xCounts(c(tmpdir, tmpdir), mtx.class = "SVT_SparseMatrix", delayed = TRUE) > class(counts(z)) [1] "DelayedMatrix" att…
Comment: Best practice for handling large data (matrix with >2^31-1 non-zero elements) in
by
James W. MacDonald
68k
That's weird. Using the example data works for me. ``` > example(read10xCounts) rd10xC> # Mocking up some 10X genomics output. rd10xC> ex…
Comment: Join BOC Sciences at Drug Discovery Chemistry
by
teamardigen
• 0
Sounds like an exciting event for anyone passionate about small molecule innovation. The focus on discovery and optimization really drives …
Comment: Best practice for handling large data (matrix with >2^31-1 non-zero elements) in
by
dan.gatti
• 0
I am, but perhaps I'm not understanding how it should work. > sse = DropletUtils::read10xCounts(curr_files[1], mtx.class = 'SVT_Sparse…
Comment: Best practice for handling large data (matrix with >2^31-1 non-zero elements) in
by
James W. MacDonald
68k
Did you use the development version as Aaron suggested? There is an argument to read the market matrix file directly into an `SVT_SparseMat…
Votes
DESeq2 for candidate gene analysis
Join BOC Sciences at Drug Discovery Chemistry
Drug datasets for RNA-seq
Comment: Check removeBatchEffect effectiveness
Comment: Streamlining the computing time for MiloDE p-value correction in large dataset?
Awards
• All
Popular Question
to
jf1
• 0
Popular Question
to
Hervé Pagès
16k
Popular Question
to
Gordon Smyth
53k
Popular Question
to
dan.gatti
• 0
Popular Question
to
shepherl
4.2k
Locations
• All
United States,
4 minutes ago
Germany,
21 minutes ago
Spain,
31 minutes ago
Pittsburgh, United States,
1 hour ago
United Kingdom,
2 hours ago
Traffic: 663 users visited in the last hour
Content
Search
Users
Tags
Badges
Help
About
FAQ
Access
RSS
API
Stats
Use of this site constitutes acceptance of our
User Agreement and Privacy Policy
.
Powered by the
version 2.3.6