Showing : Biomart • reset
2
votes
2
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1.3k
views
mmusculus GO terms with Biomart
biomaRt GOTerms
4.7 years ago salvin • 0
1
vote
2
replies
1.4k
views
Extract flanking sequence for a list of genes with biomaRt
biomaRt
4.7 years ago lessismore ▴ 20
1
vote
2
replies
1.2k
views
Error running ensembl via Biomart disk I/O error
biomaRt conicsmat
updated 4.7 years ago by ★ 6.6k • written 4.7 years ago by ▴ 10
0
votes
2
replies
1.9k
views
News: Ensembl 103 has been released
biomaRt ensembldb Ensembl ensemblVEP Biomart
4.7 years ago • updated 4.5 years ago mchakiachvili ▴ 20
0
votes
2
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1.6k
views
Error log when I use biomaRt getBM
biomaRt annotationTools
updated 4.7 years ago by ★ 6.6k • written 4.7 years ago by • 0
1
vote
2
replies
1.1k
views
Problem with biomaRt::select
biomaRt
4.8 years ago analeonpalacio ▴ 10
1
vote
2
replies
1.3k
views
How to get both hgnc_symbol and all cdna_coding_start values associated?
biomaRt cdna keys gene_start
4.8 years ago bastien_chassagnol • 0
2
votes
2
replies
4.8k
views
mapping gene type or biotype to ENSEMBL ID
ensembldb biomaRt org.Hs.eg.db Annotation
updated 4.8 years ago by ★ 2.1k • written 4.8 years ago by • 0
4
votes
6
replies
3.0k
views
Extract canonical coding sequence with getBM
Bioconductor biomaRt
4.8 years ago heiko_kin ▴ 60
0
votes
7
replies
2.5k
views
Cannot call biomaRt library.
installationofbioconductor biomaRt
4.8 years ago dolivenca3 • 0
0
votes
4
replies
5.9k
views
Problems Installing biomaRt
biomart linux
updated 4.9 years ago by 25k • written 7.5 years ago by • 0
0
votes
1
reply
1.7k
views
Accessing local installation of biomart results in "Unexpected format to the list of available marts"
mart martconfigurator biomaRt xml
updated 4.9 years ago by ★ 6.6k • written 4.9 years ago by • 0
1
vote
2
replies
11k
views
Error in UseMethod("filter_") : no applicable method for 'filter_' applied to an object of class "c('tbl_SQLiteConnection', 'tbl_dbi', 'tbl_sql', …
ErrorinUseMethod("filter_") biomaRt
updated 4.9 years ago by • 0 • written 4.9 years ago by ▴ 10
0
votes
1
reply
3.2k
views
biomart - Human Transcriptome Array 2.0 - Affymetrix - ID to Symbol Problem
biomaRt
updated 4.9 years ago by ★ 6.6k • written 4.9 years ago by • 0
0
votes
0
replies
1.1k
views
News: Ensembl 102 has been released
Ensembl biomaRt BioMar ensembldb
4.9 years ago mchakiachvili ▴ 20
4
votes
6
replies
2.2k
views
biomaRt "longer object length is not a multiple of shorter object length"
biomaRt
4.9 years ago Linda • 0
1
vote
9
replies
4.0k
views
How can I retrieve a protein's coding sequence using getSequence
biomaRt
4.9 years ago heiko_kin ▴ 60
1
vote
2
replies
1.7k
views
How to mimic biomaRt results with AnnotationHub?
biomaRt AnnotationHub
5.0 years ago Ezgi ▴ 60
3
votes
3
replies
9.4k
views
BiomaRt::getBM Error in UseMethod(filter_)
biomaRt
5.0 years ago suyang • 0
4
votes
3
replies
2.3k
views
OrganismDbi throws error for Oryza Sativa indica org.db preparation
GenomeInfoDb OrganismDbi biomaRt
updated 5.0 years ago by 68k • written 5.0 years ago by ▴ 20
0
votes
4
replies
3.0k
views
Cannot properly finish biomaRt query
software error annotation biomart
updated 5.0 years ago by • 0 • written 5.4 years ago by ▴ 30
0
votes
3
replies
3.0k
views
biomart archive version
annotation biomart
5.0 years ago raakesh_7111 • 0
2
votes
6
replies
2.3k
views
getLDS error in scan
biomaRt getLDS convert gene symbols
updated 5.0 years ago by ★ 6.6k • written 5.0 years ago by • 0
5
votes
8
replies
19k
views
Ensembl site unresponsive
ensembl biomart
updated 4.5 years ago by • 0 • written 5.0 years ago by ▴ 50
4
votes
4
replies
4.0k
views
biomaRt error Error in scan.... Line 1 did not have 3 elements.
biomaRt
updated 5.0 years ago by ★ 6.6k • written 5.0 years ago by ▴ 20
21
votes
34
replies
11k
views
Biomart error when updating to R 4.0.2
Biomart
updated 5.0 years ago by ★ 6.6k • written 5.0 years ago by ▴ 40
0
votes
4
replies
2.1k
views
Question: error in Bioconductor getBM
biomaRt getBM
updated 5.1 years ago by 68k • written 5.1 years ago by • 0
2
votes
11
replies
8.0k
views
biomaRT connexion problem make failed my unit tests
biomaRt Peer's Certificate Ensembl
updated 4.7 years ago by ★ 6.6k • written 5.1 years ago by • 0
4
votes
17
replies
3.7k
views
annotation conversion from old microarray to latest Entrez and Ensembl ID
biomaRt annotation Ensembl annotationHub
updated 5.2 years ago by ★ 4.0k • written 5.2 years ago by ▴ 10
0
votes
1
reply
1.3k
views
News: Ensembl 101 hase been released
Ensembl BioMart News
5.2 years ago mchakiachvili ▴ 20
5
votes
4
replies
16k
views
Getting rs ids using chr coordinates | Biomart
SNP rs id Biomart Chromosome coordinates
updated 2.3 years ago by 68k • written 5.2 years ago by • 0
2
votes
1
reply
3.2k
views
ensembl to hgnc symbols creates duplicates
r biomart genemap TPM
updated 5.2 years ago by ★ 4.0k • written 5.2 years ago by ▴ 60
6
votes
11
replies
2.8k
views
"associated_gene" attribute from biomaRt returns too few values - SNP(rsID dataset)
r biomart SNP annotation HUGO
updated 5.2 years ago by ★ 6.6k • written 5.2 years ago by • 0
0
votes
6
replies
2.0k
views
Error when trying to access BiomaRt from a cluster
biomaRt R cluster
updated 5.3 years ago by 25k • written 5.3 years ago by • 0
2
votes
2
replies
1.5k
views
How to retrieve attributes from a certain feature page using biomaRt
biomaRt getBM
updated 5.3 years ago by 68k • written 5.3 years ago by • 0
0
votes
2
replies
1.7k
views
TCGAbiolinks BioMart error
TCGAbiolinks BioMart
updated 5.3 years ago by 68k • written 5.3 years ago by ▴ 10
1
vote
3
replies
3.5k
views
Convert mouse gene ids to hamster gene ids
biomart R ensembl
updated 2.7 years ago by ★ 4.0k • written 5.3 years ago by • 0
0
votes
0
replies
1.1k
views
RDAVIDWebService Package Official Gene Symbol IDs in GO Term Tables
RDAVIDWebService Gene Ontology GOTerm biomaRt
5.3 years ago ra711 • 0
0
votes
2
replies
1.1k
views
biomaRt asked to report: The number of columns in the result table does not equal the number of attributes in the query.
biomart
updated 5.4 years ago by 68k • written 5.4 years ago by ▴ 10
0
votes
5
replies
2.0k
views
Error with using getBM function in biomaRt
go r software error R biomaRt
5.4 years ago morteza.aslanzadeh ▴ 30
1
vote
5
replies
1.9k
views
Invalid result error in biomaRt::getBM with archive Ensembl versions
biomart
updated 5.4 years ago by 68k • written 5.4 years ago by ★ 7.9k
1
vote
5
replies
3.4k
views
Peer's Certificate issuer is not recognized
BioMart
updated 5.5 years ago by ★ 6.6k • written 5.5 years ago by • 0
1
vote
0
replies
1.1k
views
News: Ensembl 100 has been released
biomart ensembl e100 mart news News
5.5 years ago Thomas Maurel ▴ 800
1
vote
2
replies
681
views
The query to the BioMart webservice returned an invalid result: biomaRt expected a character string of length 1
biomart
5.5 years ago xiaolei.zhou • 0
1
vote
4
replies
3.5k
views
Issue with Biomart- cannot access ensembl
biomaRT
updated 13 months ago by • 0 • written 5.5 years ago by • 0
1
vote
2
replies
1.9k
views
getBM biomart ensembl Error report
biomaRt ensembl
updated 5.5 years ago by ★ 6.6k • written 5.5 years ago by ▴ 10
0
votes
1
reply
757
views
biomaRt: The query to the BioMart webservice returned an invalid result: biomaRt expected a character string of length 1.
biomart
updated 5.5 years ago by ★ 1.4k • written 5.5 years ago by • 0
2
votes
1
reply
902
views
GO term "GO:1904936 interneuron migration" not found using biomart
biomart goterm
updated 5.5 years ago by ★ 6.6k • written 5.5 years ago by • 0
2
votes
2
replies
817
views
BioMart Error 28
software error biomart error28
updated 5.6 years ago by ★ 4.0k • written 5.6 years ago by ▴ 60
2
votes
2
replies
963
views
BiomaRt, getBM error
biomaRt
updated 5.6 years ago by ★ 6.6k • written 5.6 years ago by • 0
1,081 results • Page 4 of 22
Recent ...
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Answer: Using DESeq2 for age prediction by ATpoint ★ 5.0k
The package has no such inbuilt function but you are free to use the vst (or any normalized) counts to train a regression model or classifi…
Comment: Best practice for handling large data (matrix with >2^31-1 non-zero elements) in by James W. MacDonald 68k
Aaron already answered your question. If you have an HDF5 file, it will be read in as a `TENxMatrix` object, which isn't actually read in -…
Comment: Best practice for handling large data (matrix with >2^31-1 non-zero elements) in by dan.gatti • 0
Very strange. We have the same package versions. I tried adding the mtx.class, type, and delayed arguments, but it's still making the coun…
Comment: DESeq2 for candidate gene analysis by piffelpaff ▴ 20
thank you so much for answering Dr. Love!
Answer: DESeq2 for candidate gene analysis by Michael Love 43k
Your plan 1 is reasonable. Run DESeq2 on the whole dataset to obtain size factors and moderated dispersion estimates and then extract the u…
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A: Multi-level experiments in Limma
Answer: Should voomWithQualityWeights still be used when the sample-specific weights var
Answer: DESeq2 for candidate gene analysis
DESeq2 for candidate gene analysis
Answer: DESeq2 for candidate gene analysis
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