Showing : CHAMP • reset
1
vote
9
replies
2.9k
views
Error using champ.import
ChAMP EPICv2
updated 21 days ago by • 0 • written 16 months ago by • 0
1
vote
1
reply
347
views
Empty Results from champ.DMP Despite Expected Output
MethylationArray ChAMP R
updated 9 weeks ago by 67k • written 9 weeks ago by • 0
0
votes
4
replies
449
views
Failed to install geneLenDataBase
geneLenDataBase ChAMP
updated 3 months ago by 4.1k • written 3 months ago by • 0
3
votes
12
replies
3.3k
views
How to get DMR for Infinium methylation EPIC v2
ChAMP DMRcate minfi
updated 3 months ago by ▴ 200 • written 11 months ago by ▴ 10
0
votes
0
replies
367
views
ChAMP analysis Error: Meth Matrix and UnMeth Matrix seems not paried correctly AND incomplete final line
MethylationArray methylationArrayAnalysis ChAMP
4 months ago Mathu • 0
0
votes
1
reply
315
views
single excel file containing methylation beta values does not get loaded in ChAMP
ChAMP
updated 4 months ago by ▴ 780 • written 4 months ago by • 0
0
votes
3
replies
1.1k
views
ChAMP not available for bioconductor 3.19
Bioconductor ChAMP
updated 5 months ago by 4.1k • written 5 months ago by • 0
2
votes
3
replies
655
views
Problem installing ChAMP on a MacBook
ChAMP
updated 5 months ago by 4.1k • written 5 months ago by • 0
0
votes
7
replies
1.0k
views
ChAMP installation issue
Cha ChAMP
updated 5 months ago by 67k • written 5 months ago by • 0
2
votes
4
replies
757
views
Error EPICv2 ChAMP
ChAMPdata IlluminaHumanMethylationEPICv2anno.20a1.hg38 ChAMP
updated 6 months ago by 67k • written 6 months ago by • 0
1
vote
2
replies
403
views
Error in champ.load(): The following specified files do not exist
ChAMP
6 months ago Sherin • 0
1
vote
1
reply
917
views
Need Advice: Issue with ChAMP Analysis - Meth and UnMeth Matrix Pairing Error
MethylationArray methylationArrayAnalysis ChAMP
updated 8 months ago by 67k • written 8 months ago by • 0
0
votes
0
replies
411
views
how to solve this error?
ChAMPdata ChAMP
8 months ago Meghana • 0
0
votes
4
replies
1.9k
views
ChAMP - obtaining beta values using EPICv2 annotation
ChAMP EPICv2
updated 20 hours ago by • 0 • written 10 months ago by • 0
0
votes
0
replies
395
views
champ.load() from .idat files of GDC/TCGA dataset
TCGAbiolinks ChAMP
9 months ago Thalita • 0
0
votes
7
replies
1.0k
views
Deleted:No significant MVPs with a BH adjusted P-value below 0.05
ChAMP
updated 11 months ago by ▴ 780 • written 11 months ago by • 0
2
votes
1
reply
964
views
ChAMP can't be found in Bioc3.18?
ChAMP
11 months ago ramonfallon ▴ 20
0
votes
7
replies
2.2k
views
error with champ.load
ChAMP champ methylation
updated 14 months ago by • 0 • written 4.6 years ago by • 0
0
votes
3
replies
958
views
ChAMP trouble reading csv file
ChAMP
written 15 months ago by • 0
1
vote
16
replies
4.3k
views
error in ChAMP loading file
ChAMP
updated 8 months ago by • 0 • written 24 months ago by • 0
3
votes
7
replies
6.1k
views
error with champ.load
champ
written 7.0 years ago by ▴ 10
0
votes
2
replies
1.5k
views
Trouble Loading Data into Champ
loaddata ChAMPdata champload R ChAMP
updated 17 months ago by • 0 • written 3.7 years ago by • 0
0
votes
3
replies
931
views
Error in champ.load() function
ChAMP
updated 18 months ago by 67k • written 18 months ago by • 0
0
votes
2
replies
1.1k
views
How to find probe enhancer annotation for Illumina EPIC array?
IlluminaHumanMethylationEPICmanifest ChAMP annotation
updated 18 months ago by 67k • written 18 months ago by • 0
0
votes
2
replies
1.4k
views
Error in loading file using champ.load() from ChAMP package
champ.load epicarray ChAMP methylationArrayAnalysis
18 months ago arisarkar88 ▴ 40
2
votes
8
replies
2.9k
views
Problem at champ.load
ChAMPdata ChAMP
updated 3 hours ago by • 0 • written 18 months ago by • 0
0
votes
1
reply
861
views
Unable to create pd file for ChAMP analysis
ChAMP
updated 4 months ago by • 0 • written 18 months ago by • 0
0
votes
0
replies
509
views
Cannot generate plots when calling ChAMP
ChAMP DMP.GUI
19 months ago Kan • 0
0
votes
2
replies
1.0k
views
error in champ.SVD
svd methylation champ
updated 19 months ago by 4.1k • written 19 months ago by • 0
0
votes
3
replies
1.6k
views
ChAMP filter bug when using beta matrix and pd as input
ChAMP
written 7.4 years ago by • 0
1
vote
1
reply
1.0k
views
champ.load IDAT files from subdirectories
ChAMP
updated 20 months ago by ▴ 780 • written 20 months ago by • 0
0
votes
1
reply
1.5k
views
Trying to generate a pd file for ChAMP from idat files with no array or slide information in file names
ChAMP
updated 23 months ago by 67k • written 23 months ago by ▴ 10
1
vote
1
reply
858
views
In readLines(csvfile)
pipeline testdata ChAMP
updated 23 months ago by 67k • written 23 months ago by • 0
0
votes
1
reply
744
views
Champ.impute - myLoad not found
ChAMP
updated 2.1 years ago by ▴ 780 • written 2.1 years ago by • 0
0
votes
3
replies
1.4k
views
methylated/unmethylated media threshold (EPIC assay)
IlluminaHumanMethylationEPICanno.ilm10b3.hg19 ChAMP minfi
2.6 years ago • updated 2.5 years ago ramonfallon ▴ 20
0
votes
1
reply
1.5k
views
champ.SVD() error, assumes standard class() function will return single string
ChAMP
updated 2.5 years ago by ▴ 780 • written 2.5 years ago by ▴ 20
0
votes
7
replies
3.2k
views
ERROR happens when install "DSS" package
methylationArrayAnalysis ChAMP DMP DSS
updated 2.0 years ago by 67k • written 2.5 years ago by • 0
0
votes
4
replies
1.7k
views
Problem installing ChAMP package.
ChAMP
2.6 years ago Yu-min • 0
0
votes
1
reply
1.1k
views
How to control for confounders in champ.DMP and champ.DMR?
ChAMP
updated 2.6 years ago by ▴ 780 • written 2.6 years ago by • 0
0
votes
1
reply
1.0k
views
Error in ChAMP GUI
ChAMP shiny ChAMPdata
updated 2.6 years ago by • 0 • written 2.7 years ago by • 0
1
vote
2
replies
3.1k
views
Error using ChAMP SVD analysis
ChAMP
updated 20 months ago by • 0 • written 3.3 years ago by • 0
0
votes
0
replies
1.0k
views
Error in champ.svd - function 'EstDimRMTv2' within champ.svd acting inconsistently?
minfiData ChAMP
2.8 years ago behr201 • 0
0
votes
3
replies
1.3k
views
Wrong terminology used on champ.load() output of ChAMP package?
ChAMPdata ChAMP
updated 2.9 years ago by ▴ 780 • written 2.9 years ago by • 0
0
votes
0
replies
1.0k
views
Problem loading Red channel idat files with champ.load
R MethylationArrayData ChAMP
2.9 years ago Paulina • 0
3
votes
4
replies
9.7k
views
Problem loading R packages on MacBook Pro
newpackage ChAMP
updated 2.1 years ago by • 0 • written 3.0 years ago by • 0
0
votes
2
replies
1.0k
views
problems opening ChAMP
ChAMP
updated 3.0 years ago by ▴ 780 • written 3.0 years ago by • 0
0
votes
1
reply
1.3k
views
error in champ.norm
champ.norm ChAMP
updated 3.1 years ago by ★ 4.0k • written 3.1 years ago by • 0
0
votes
0
replies
908
views
ChAMP.CNA analysis
CopyNumberPlots ChAMP CopyNumberVariation CopyNumberVariationData
3.2 years ago FWNL15 • 0
0
votes
2
replies
1.5k
views
Why the order of sample names in the beta matrix affect the analysis results of Champ.DMP? What should I do?
ChAMP limma Bioconductor ChAMPdata
3.2 years ago Jinyue • 0
0
votes
5
replies
1.9k
views
Loading ChAMP IdatFiles with two different ArrayTypes
ChAMP
updated 3.3 years ago by ▴ 290 • written 3.3 years ago by • 0
50 results • Page 1 of 1
Recent ...
Replies
Comment: Differential Expression Analysis with unbalanced batches without replication bet by Thili • 0
Thank you for your reply. I currently have batch-corrected data processed with scvi-tools (specifically, totalvi) and have followed the sam…
Comment: Problem at champ.load by andrew.gibbons • 0
I'd love to know if anyone has a workaround too. I've tried rolling back ChAMP and R to the previous versions that others have said work wi…
Comment: ESTMATE, MCPcounter, EPIC, xCell input by Kang • 0
These are not, as far as I know, bioconductor packages. You should query on the websites for those specific software programs. @[mapquest][…
Comment: Robust way of dealing with low number of samples for Differential Gene Expressio by Kang • 0
I believe that pseudo-bulking is a strong way to approach DE, as long as it is possible to reliably identify the cell type across data and …
Comment: GOstats kegg analysis in wheat - help - none of the objects in the first column by GV Yoshikawa • 0
Thank you for the reply. I tried swapping columns before asking, it made no difference. head(keggframeData) path_id kegg…
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