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CHAMP
•
reset
0
votes
1
reply
363
views
ChAMP.DMR error - Error in makeGenomicRatioSetFromMatrix
ChAMP
updated 7 weeks ago by
O'Brien
• 0 • written 8 weeks ago by
André
• 0
0
votes
0
replies
235
views
Errors trying to load EPIC v2 data in ChAMP
ChAMP
ChAMPdata
3 months ago
elgomez
• 0
1
vote
9
replies
3.2k
views
Error using champ.import
ChAMP
EPICv2
updated 4 months ago by
Ricky
• 0 • written 19 months ago by
medha.suman
• 0
1
vote
1
reply
482
views
Empty Results from champ.DMP Despite Expected Output
MethylationArray
ChAMP
R
updated 5 months ago by
James W. MacDonald
68k • written 5 months ago by
Fateme
• 0
0
votes
4
replies
594
views
Failed to install geneLenDataBase
geneLenDataBase
ChAMP
updated 6 months ago by
shepherl
4.1k • written 6 months ago by
Fang
• 0
3
votes
12
replies
4.2k
views
How to get DMR for Infinium methylation EPIC v2
ChAMP
DMRcate
minfi
updated 6 months ago by
Tim Peters
▴ 230 • written 15 months ago by
rae.alshammari
▴ 10
0
votes
1
reply
594
views
ChAMP analysis Error: Meth Matrix and UnMeth Matrix seems not paried correctly AND incomplete final line
MethylationArray
methylationArrayAnalysis
ChAMP
updated 11 weeks ago by
nereaherrera23
• 0 • written 7 months ago by
Mathu
• 0
0
votes
1
reply
425
views
single excel file containing methylation beta values does not get loaded in ChAMP
ChAMP
updated 7 months ago by
Basti
▴ 780 • written 7 months ago by
tahirah.yasmin2014
• 0
0
votes
3
replies
1.4k
views
ChAMP not available for bioconductor 3.19
Bioconductor
ChAMP
updated 8 months ago by
shepherl
4.1k • written 8 months ago by
Macsue
• 0
2
votes
3
replies
810
views
Problem installing ChAMP on a MacBook
ChAMP
updated 9 months ago by
shepherl
4.1k • written 9 months ago by
Galia
• 0
0
votes
7
replies
1.3k
views
ChAMP installation issue
Cha
ChAMP
updated 9 months ago by
James W. MacDonald
68k • written 9 months ago by
e1271094
• 0
2
votes
4
replies
1.0k
views
Error EPICv2 ChAMP
ChAMPdata
IlluminaHumanMethylationEPICv2anno.20a1.hg38
ChAMP
updated 10 months ago by
James W. MacDonald
68k • written 10 months ago by
Mirella Aurora
• 0
1
vote
2
replies
492
views
Error in champ.load(): The following specified files do not exist
ChAMP
10 months ago
Sherin
• 0
1
vote
1
reply
1.2k
views
Need Advice: Issue with ChAMP Analysis - Meth and UnMeth Matrix Pairing Error
MethylationArray
methylationArrayAnalysis
ChAMP
updated 12 months ago by
James W. MacDonald
68k • written 12 months ago by
david.cheishvili
• 0
0
votes
0
replies
495
views
how to solve this error?
ChAMPdata
ChAMP
12 months ago
Meghana
• 0
0
votes
4
replies
2.5k
views
ChAMP - obtaining beta values using EPICv2 annotation
ChAMP
EPICv2
updated 3 months ago by
icecreamlover
• 0 • written 13 months ago by
ChunkyJones
• 0
0
votes
0
replies
487
views
champ.load() from .idat files of GDC/TCGA dataset
TCGAbiolinks
ChAMP
12 months ago
Thalita
• 0
0
votes
7
replies
1.2k
views
Deleted:No significant MVPs with a BH adjusted P-value below 0.05
ChAMP
updated 14 months ago by
Basti
▴ 780 • written 14 months ago by
486342583
• 0
2
votes
1
reply
1.1k
views
ChAMP can't be found in Bioc3.18?
ChAMP
15 months ago
ramonfallon
▴ 20
0
votes
7
replies
2.4k
views
error with champ.load
ChAMP
champ
methylation
updated 18 months ago by
mike
• 0 • written 4.9 years ago by
jkong
• 0
0
votes
3
replies
1.1k
views
ChAMP trouble reading csv file
ChAMP
written 19 months ago by
Keasiykan
• 0
1
vote
17
replies
5.0k
views
error in ChAMP loading file
ChAMP
updated 11 days ago by
81becky
• 0 • written 2.3 years ago by
Giulia
• 0
3
votes
7
replies
6.4k
views
error with champ.load
champ
written 7.3 years ago by
o.giannakopoulou
▴ 10
0
votes
2
replies
1.6k
views
Trouble Loading Data into Champ
loaddata
ChAMPdata
champload
R
ChAMP
updated 20 months ago by
hfbarrerat
• 0 • written 4.0 years ago by
Bethan
• 0
0
votes
3
replies
1.0k
views
Error in champ.load() function
ChAMP
updated 21 months ago by
James W. MacDonald
68k • written 21 months ago by
Monalisa
• 0
0
votes
2
replies
1.3k
views
How to find probe enhancer annotation for Illumina EPIC array?
IlluminaHumanMethylationEPICmanifest
ChAMP
annotation
updated 21 months ago by
James W. MacDonald
68k • written 21 months ago by
Matilda
• 0
0
votes
2
replies
1.5k
views
Error in loading file using champ.load() from ChAMP package
champ.load
epicarray
ChAMP
methylationArrayAnalysis
22 months ago • updated 21 months ago
arisarkar88
▴ 40
2
votes
8
replies
3.4k
views
Problem at champ.load
ChAMPdata
ChAMP
updated 3 months ago by
andrew.gibbons
• 0 • written 22 months ago by
angel
• 0
0
votes
1
reply
940
views
Unable to create pd file for ChAMP analysis
ChAMP
updated 7 months ago by
tahirah.yasmin2014
• 0 • written 22 months ago by
Monalisa
• 0
0
votes
0
replies
564
views
Cannot generate plots when calling ChAMP
ChAMP
DMP.GUI
22 months ago
Kan
• 0
0
votes
2
replies
1.1k
views
error in champ.SVD
svd
methylation
champ
updated 22 months ago by
shepherl
4.1k • written 22 months ago by
Giulia
• 0
0
votes
3
replies
1.7k
views
ChAMP filter bug when using beta matrix and pd as input
ChAMP
written 7.7 years ago by
allenyuchishing
• 0
1
vote
1
reply
1.2k
views
champ.load IDAT files from subdirectories
ChAMP
updated 23 months ago by
Basti
▴ 780 • written 23 months ago by
Sin
• 0
0
votes
1
reply
1.7k
views
Trying to generate a pd file for ChAMP from idat files with no array or slide information in file names
ChAMP
updated 2.2 years ago by
James W. MacDonald
68k • written 2.2 years ago by
minardsmitha
▴ 10
1
vote
1
reply
949
views
In readLines(csvfile)
pipeline
testdata
ChAMP
updated 2.2 years ago by
James W. MacDonald
68k • written 2.2 years ago by
luisfranciscoteves
• 0
0
votes
1
reply
829
views
Champ.impute - myLoad not found
ChAMP
updated 2.4 years ago by
Basti
▴ 780 • written 2.4 years ago by
JD
• 0
0
votes
3
replies
1.5k
views
methylated/unmethylated media threshold (EPIC assay)
IlluminaHumanMethylationEPICanno.ilm10b3.hg19
ChAMP
minfi
2.9 years ago • updated 2.8 years ago
ramonfallon
▴ 20
0
votes
1
reply
1.6k
views
champ.SVD() error, assumes standard class() function will return single string
ChAMP
updated 2.8 years ago by
Basti
▴ 780 • written 2.8 years ago by
ramonfallon
▴ 20
0
votes
7
replies
3.4k
views
ERROR happens when install "DSS" package
methylationArrayAnalysis
ChAMP
DMP
DSS
updated 2.3 years ago by
James W. MacDonald
68k • written 2.8 years ago by
16301050225
• 0
0
votes
4
replies
1.8k
views
Problem installing ChAMP package.
ChAMP
2.8 years ago
Yu-min
• 0
0
votes
1
reply
1.3k
views
How to control for confounders in champ.DMP and champ.DMR?
ChAMP
updated 2.9 years ago by
Basti
▴ 780 • written 2.9 years ago by
l.milicic
• 0
0
votes
1
reply
1.1k
views
Error in ChAMP GUI
ChAMP
shiny
ChAMPdata
updated 2.9 years ago by
anna.stanislawska
• 0 • written 2.9 years ago by
Mari
• 0
1
vote
2
replies
3.3k
views
Error using ChAMP SVD analysis
ChAMP
updated 23 months ago by
Seohyun
• 0 • written 3.6 years ago by
FWNL15
• 0
0
votes
0
replies
1.1k
views
Error in champ.svd - function 'EstDimRMTv2' within champ.svd acting inconsistently?
minfiData
ChAMP
3.1 years ago
behr201
• 0
0
votes
3
replies
1.4k
views
Wrong terminology used on champ.load() output of ChAMP package?
ChAMPdata
ChAMP
updated 3.2 years ago by
Basti
▴ 780 • written 3.2 years ago by
mariat
• 0
0
votes
0
replies
1.1k
views
Problem loading Red channel idat files with champ.load
R
MethylationArrayData
ChAMP
3.2 years ago
Paulina
• 0
3
votes
4
replies
10k
views
Problem loading R packages on MacBook Pro
newpackage
ChAMP
updated 2.4 years ago by
Yi Ping
• 0 • written 3.3 years ago by
Brendon
• 0
0
votes
2
replies
1.1k
views
problems opening ChAMP
ChAMP
updated 3.3 years ago by
Basti
▴ 780 • written 3.3 years ago by
AaVee
• 0
0
votes
1
reply
1.4k
views
error in champ.norm
champ.norm
ChAMP
updated 3.4 years ago by
Kevin Blighe
★ 4.0k • written 3.4 years ago by
yu
• 0
0
votes
0
replies
991
views
ChAMP.CNA analysis
CopyNumberPlots
ChAMP
CopyNumberVariation
CopyNumberVariationData
3.5 years ago
FWNL15
• 0
50 results • Page
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Comment: how should I apply "cpg.annotate" to TCGA methylation data in hg38 for HM450K?
Comment: how should I apply "cpg.annotate" to TCGA methylation data in hg38 for HM450K?
Comment: how should I apply "cpg.annotate" to TCGA methylation data in hg38 for HM450K?
Comment: how should I apply "cpg.annotate" to TCGA methylation data in hg38 for HM450K?
A: Volcanoplot with limma - RAW P-values or Adj.P-Values
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