Showing : ChAMP • reset
1
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18
replies
7.2k
views
error in ChAMP loading file
ChAMP
updated 3 months ago by • 0 • written 2.9 years ago by • 0
0
votes
8
replies
1.7k
views
Deleted:No significant MVPs with a BH adjusted P-value below 0.05
ChAMP
written 22 months ago by • 0
2
votes
10
replies
4.4k
views
Problem at champ.load
ChAMPdata ChAMP
updated 6 months ago by • 0 • written 2.5 years ago by • 0
0
votes
1
reply
616
views
ChAMP.DMR error - Error in makeGenomicRatioSetFromMatrix
ChAMP
updated 9 months ago by • 0 • written 9 months ago by • 0
0
votes
0
replies
488
views
Errors trying to load EPIC v2 data in ChAMP
ChAMP ChAMPdata
10 months ago elgomez • 0
1
vote
9
replies
3.7k
views
Error using champ.import
ChAMP EPICv2
updated 11 months ago by • 0 • written 2.3 years ago by • 0
1
vote
1
reply
773
views
Empty Results from champ.DMP Despite Expected Output
MethylationArray ChAMP R
updated 13 months ago by 68k • written 13 months ago by • 0
0
votes
4
replies
876
views
Failed to install geneLenDataBase
geneLenDataBase ChAMP
updated 14 months ago by 4.2k • written 14 months ago by • 0
4
votes
12
replies
5.5k
views
How to get DMR for Infinium methylation EPIC v2
ChAMP DMRcate minfi
updated 14 months ago by ▴ 230 • written 22 months ago by ▴ 20
0
votes
1
reply
877
views
ChAMP analysis Error: Meth Matrix and UnMeth Matrix seems not paried correctly AND incomplete final line
MethylationArray methylationArrayAnalysis ChAMP
updated 10 months ago by • 0 • written 15 months ago by • 0
0
votes
1
reply
611
views
single excel file containing methylation beta values does not get loaded in ChAMP
ChAMP
updated 15 months ago by ▴ 780 • written 15 months ago by • 0
0
votes
3
replies
1.8k
views
ChAMP not available for bioconductor 3.19
Bioconductor ChAMP
updated 16 months ago by 4.2k • written 16 months ago by • 0
2
votes
3
replies
1.1k
views
Problem installing ChAMP on a MacBook
ChAMP
updated 16 months ago by 4.2k • written 16 months ago by • 0
0
votes
7
replies
1.8k
views
ChAMP installation issue
Cha ChAMP
updated 16 months ago by 68k • written 17 months ago by • 0
2
votes
4
replies
1.5k
views
Error EPICv2 ChAMP
ChAMPdata IlluminaHumanMethylationEPICv2anno.20a1.hg38 ChAMP
updated 17 months ago by 68k • written 17 months ago by • 0
1
vote
2
replies
672
views
Error in champ.load(): The following specified files do not exist
ChAMP
17 months ago Sherin • 0
1
vote
1
reply
1.6k
views
Need Advice: Issue with ChAMP Analysis - Meth and UnMeth Matrix Pairing Error
MethylationArray methylationArrayAnalysis ChAMP
updated 19 months ago by 68k • written 19 months ago by • 0
0
votes
0
replies
679
views
how to solve this error?
ChAMPdata ChAMP
19 months ago Meghana • 0
0
votes
4
replies
3.4k
views
ChAMP - obtaining beta values using EPICv2 annotation
ChAMP EPICv2
updated 11 months ago by • 0 • written 21 months ago by • 0
0
votes
0
replies
627
views
champ.load() from .idat files of GDC/TCGA dataset
TCGAbiolinks ChAMP
20 months ago Thalita • 0
2
votes
1
reply
1.3k
views
ChAMP can't be found in Bioc3.18?
ChAMP
22 months ago ramonfallon ▴ 20
0
votes
7
replies
2.7k
views
error with champ.load
ChAMP champ methylation
updated 2.1 years ago by • 0 • written 5.5 years ago by • 0
0
votes
3
replies
1.3k
views
ChAMP trouble reading csv file
ChAMP
written 2.2 years ago by • 0
3
votes
7
replies
6.9k
views
error with champ.load
champ
written 7.9 years ago by ▴ 10
0
votes
2
replies
1.9k
views
Trouble Loading Data into Champ
loaddata ChAMPdata champload R ChAMP
updated 2.4 years ago by • 0 • written 4.6 years ago by • 0
0
votes
3
replies
1.2k
views
Error in champ.load() function
ChAMP
updated 2.4 years ago by 68k • written 2.4 years ago by • 0
0
votes
2
replies
1.6k
views
How to find probe enhancer annotation for Illumina EPIC array?
IlluminaHumanMethylationEPICmanifest ChAMP annotation
updated 2.4 years ago by 68k • written 2.4 years ago by • 0
0
votes
2
replies
1.7k
views
Error in loading file using champ.load() from ChAMP package
champ.load epicarray ChAMP methylationArrayAnalysis
2.5 years ago • updated 2.4 years ago arisarkar88 ▴ 40
0
votes
1
reply
1.1k
views
Unable to create pd file for ChAMP analysis
ChAMP
updated 15 months ago by • 0 • written 2.5 years ago by • 0
0
votes
0
replies
681
views
Cannot generate plots when calling ChAMP
ChAMP DMP.GUI
2.5 years ago Kan • 0
0
votes
2
replies
1.3k
views
error in champ.SVD
svd methylation champ
updated 2.5 years ago by 4.2k • written 2.5 years ago by • 0
0
votes
3
replies
1.9k
views
ChAMP filter bug when using beta matrix and pd as input
ChAMP
written 8.3 years ago by • 0
1
vote
1
reply
1.5k
views
champ.load IDAT files from subdirectories
ChAMP
updated 2.6 years ago by ▴ 780 • written 2.6 years ago by • 0
0
votes
1
reply
2.0k
views
Trying to generate a pd file for ChAMP from idat files with no array or slide information in file names
ChAMP
updated 2.8 years ago by 68k • written 2.8 years ago by ▴ 10
1
vote
1
reply
1.1k
views
In readLines(csvfile)
pipeline testdata ChAMP
updated 2.8 years ago by 68k • written 2.8 years ago by • 0
0
votes
1
reply
984
views
Champ.impute - myLoad not found
ChAMP
updated 3.0 years ago by ▴ 780 • written 3.0 years ago by • 0
0
votes
3
replies
1.7k
views
methylated/unmethylated media threshold (EPIC assay)
IlluminaHumanMethylationEPICanno.ilm10b3.hg19 ChAMP minfi
3.5 years ago • updated 3.4 years ago ramonfallon ▴ 20
0
votes
1
reply
1.8k
views
champ.SVD() error, assumes standard class() function will return single string
ChAMP
updated 3.4 years ago by ▴ 780 • written 3.4 years ago by ▴ 20
0
votes
7
replies
3.8k
views
ERROR happens when install "DSS" package
methylationArrayAnalysis ChAMP DMP DSS
updated 2.9 years ago by 68k • written 3.4 years ago by • 0
0
votes
4
replies
2.1k
views
Problem installing ChAMP package.
ChAMP
3.5 years ago Yu-min • 0
0
votes
1
reply
1.5k
views
How to control for confounders in champ.DMP and champ.DMR?
ChAMP
updated 3.5 years ago by ▴ 780 • written 3.5 years ago by • 0
0
votes
1
reply
1.3k
views
Error in ChAMP GUI
ChAMP shiny ChAMPdata
updated 3.6 years ago by • 0 • written 3.6 years ago by • 0
1
vote
2
replies
3.7k
views
Error using ChAMP SVD analysis
ChAMP
updated 2.6 years ago by • 0 • written 4.2 years ago by • 0
0
votes
0
replies
1.3k
views
Error in champ.svd - function 'EstDimRMTv2' within champ.svd acting inconsistently?
minfiData ChAMP
3.7 years ago behr201 • 0
0
votes
3
replies
1.5k
views
Wrong terminology used on champ.load() output of ChAMP package?
ChAMPdata ChAMP
updated 3.8 years ago by ▴ 780 • written 3.8 years ago by • 0
0
votes
0
replies
1.2k
views
Problem loading Red channel idat files with champ.load
R MethylationArrayData ChAMP
3.8 years ago Paulina • 0
3
votes
4
replies
11k
views
Problem loading R packages on MacBook Pro
newpackage ChAMP
updated 3.0 years ago by • 0 • written 3.9 years ago by • 0
0
votes
2
replies
1.3k
views
problems opening ChAMP
ChAMP
updated 3.9 years ago by ▴ 780 • written 3.9 years ago by • 0
0
votes
1
reply
1.6k
views
error in champ.norm
champ.norm ChAMP
updated 4.0 years ago by ★ 4.0k • written 4.0 years ago by • 0
0
votes
0
replies
1.1k
views
ChAMP.CNA analysis
CopyNumberPlots ChAMP CopyNumberVariation CopyNumberVariationData
4.1 years ago FWNL15 • 0
156 results • Page 1 of 4
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Comment: Streamlining the computing time for MiloDE p-value correction in large dataset? by ATpoint ★ 4.9k
Is a method that is so computationally expensive really beneficial and necessary? You seem to have biological replication, don't you, so ps…
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Outliers without replacement, independent filtering or all-zero counts for that gene. That's the three options that trigger NAs https://bio…
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The upcoming XLSolutions R course in Boston on December 19 20 is a great opportunity to enhance your data skills. Whether you re a beginner…
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`GatingSet` isn't a function in `flowCore`. It is however in `flowWorkspace`, which you would need to load first.
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Your question is more about science than it is about software syntax, and I can't give advice about how to conduct a scientific analysis, n…
Votes
Comment: incomplete imputation of missing values with LEA impute() function
Answer: Expected memory usage for analyzing large single-cell seq datasets (> 450,000 ce
Answer: ordinary t from limma [was: How would I normally compare swirl?]
Comment: readDNAStringSet with non DNA characters
Comment: Guidance on limma for pseudobulk scRNA-seq with multi-factor design
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