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Chipseq
•
reset
0
votes
0
replies
1.2k
views
No genes' ID in peak annotations during ChiP-Seq with ChIPpeakAnno R package
chippeakanno
chipseq
annotation
10.4 years ago
MarcinKosiński
• 0
4
votes
2
replies
2.2k
views
Confusing error when running ChIPQC
chipqc
chipseq
updated 10.4 years ago by
Thomas Carroll
▴ 420 • written 10.4 years ago by
Ryan C. Thompson
★ 7.9k
0
votes
0
replies
2.3k
views
Job:
Bioinformatics Analyst at University of Cambridge, Cancer Research UK Cambridge Institute
job
jobs
rnaseq
chipseq
dnaseq
Job
10.4 years ago
Rory Stark
★ 5.3k
0
votes
2
replies
2.4k
views
ChipSeq binning and normalization
chipseq
bioconductor
updated 10.4 years ago by
Aaron Lun
★ 29k • written 10.4 years ago by
ngs06
▴ 20
3
votes
9
replies
4.1k
views
ChIPQC and broadPeak input
chipseq
chipqc
chip-seq
10.4 years ago
lindahove
▴ 10
0
votes
0
replies
1.2k
views
ChIPQC showed errors 'nnodes' must be >= 1
software error
bioconductor
chipseq
chipqc
10.5 years ago
wangzhe335
• 0
3
votes
1
reply
4.0k
views
creating custom genome annotation for the ChIPQC package
ChIPSeq
QC
ChIPQC
updated 10.5 years ago by
Thomas Carroll
▴ 420 • written 10.5 years ago by
Philip Lijnzaad
▴ 160
0
votes
3
replies
2.1k
views
DiffBind concentration calculation
diffbind
chipseq
updated 10.6 years ago by
Rory Stark
★ 5.3k • written 10.6 years ago by
igor
▴ 50
8
votes
0
replies
4.3k
views
Tutorial:
Statistics and Computing in Genome Science (CSAMA) Course Material
rnaseq
chipseq
visualization
metagenomics
proteomics
Tutorial
10.6 years ago
Martin Morgan
25k
0
votes
3
replies
2.3k
views
Problem with rGADEM & MotIV - one matrix consensus after GADEM() and one plot enrichment motif
rgadem
motiv
chipseq
jaspar
updated 10.7 years ago by
emercier
• 0 • written 10.8 years ago by
w.jarassier
• 0
8
votes
9
replies
7.5k
views
ChIPseq-style peak calling for paired-end sequencing?
Chipseq
DNAseq
ATAC
bayespeak
narrowpeaks
updated 10.7 years ago by
Gordon Smyth
53k • written 10.7 years ago by
samuel collombet
▴ 140
0
votes
7
replies
2.3k
views
DiffBind fails to derive consensus peaksets
software error
chipseq
diffbind
updated 10.8 years ago by
Gord Brown
▴ 670 • written 10.8 years ago by
Nicolas Delhomme
▴ 320
2
votes
6
replies
2.2k
views
DiffBind for Allele-specific binding analysis
diffbind
chipseq
updated 10.8 years ago by
Rory Stark
★ 5.3k • written 10.8 years ago by
Vivek.b
▴ 100
2
votes
6
replies
3.3k
views
ChIPseeker: covplot function: error with some ENCODE data sets
chiPseeker
covplot
ENCODE
ChIpseq
10.8 years ago
sarabusquets88
• 0
6
votes
6
replies
4.1k
views
Score column for DiffBind::dba.peakset
DiffBind
chipseq
updated 10.8 years ago by
Gord Brown
▴ 670 • written 10.8 years ago by
teckpor
• 0
0
votes
2
replies
2.5k
views
Diffbind: Peak score normalization
normalization
chipseq
diffbind
11.1 years ago
medinaale
• 0
3
votes
1
reply
4.8k
views
DiffBind dba.peakset() and consensus peaks
chipseq
diffbind
updated 11.2 years ago by
Rory Stark
★ 5.3k • written 11.2 years ago by
Georg Otto
▴ 120
0
votes
0
replies
1.1k
views
error with islandDepthPlot in chipseq
chipseq
error
11.3 years ago
wtimp0
▴ 10
5
votes
5
replies
2.7k
views
Metagenomic analysis: Aligning ChIPseq data on TSS
metagenomics
chipseq
biomart
shortread
convert
biomaRt
11.4 years ago
patrick.schordert
▴ 30
0
votes
1
reply
3.6k
views
merge error: 'by.x' and 'by.y' specify different numbers of columns
ChIPSeq
biomaRt
chipseq
ChIPSeq
biomaRt
chipseq
updated 11.6 years ago by
James W. MacDonald
68k • written 11.6 years ago by
Tran, Nhu Quynh T
▴ 50
0
votes
10
replies
2.3k
views
DESeq on CCAT identified chipseq peaks
ChIPSeq
chipseq
DESeq
ChIPSeq
chipseq
DESeq
updated 11.7 years ago by
Rory Stark
★ 5.3k • written 11.7 years ago by
Guest User
★ 13k
0
votes
0
replies
1.2k
views
narrowpeaks profMatrix rangeval error
ChIPSeq
chipseq
NarrowPeaks
ChIPSeq
chipseq
NarrowPeaks
11.8 years ago
Robert Chase
▴ 10
0
votes
3
replies
4.4k
views
unknown error in DiffBind package
ChIPSeq
chipseq
DiffBind
ChIPSeq
chipseq
DiffBind
updated 11.8 years ago by
Rory Stark
★ 5.3k • written 11.8 years ago by
Guest User
★ 13k
0
votes
0
replies
4.6k
views
Bioconductor 2.14 is released
BiocViews
aCGH
SNP
Sequencing
RNASeq
ChIPSeq
miRNA
Microarray
qPCR
Metabolomics
Coverage
11.8 years ago
Dan Tenenbaum
★ 8.2k
0
votes
1
reply
1.9k
views
DiffBind loading Problem
Transcription
ChIPSeq
chipseq
DiffBind
Transcription
ChIPSeq
chipseq
DiffBind
12.0 years ago
Rory Stark
★ 5.3k
0
votes
1
reply
2.0k
views
IdeogramTrack and bigWig file errors in Gviz
ChIPSeq
GO
Network
rtracklayer
CAMERA
chipseq
Gviz
ChIPSeq
GO
Network
rtracklayer
Gviz
updated 12.3 years ago by
Michael Lawrence
★ 11k • written 12.3 years ago by
Miles Pufall
▴ 40
0
votes
0
replies
2.7k
views
8. CGHCall problems (Bernard North [guest]) : Bioconductor Digest, Vol 126, Issue 7
aCGH
RNASeq
ChIPSeq
Proteomics
Annotation
Normalization
GO
Network
Cancer
ChipName
probe
12.4 years ago
Sarah JugurnauthLittle
▴ 20
0
votes
2
replies
1.9k
views
Extracting overlapping gene names from a list of peaks
ChIPSeq
chipseq
ChIPSeq
chipseq
updated 12.5 years ago by
Michael Lawrence
★ 11k • written 12.5 years ago by
Patrick Schorderet
▴ 20
0
votes
6
replies
2.5k
views
IdeogramTrack and bigWig file errors in Gviz
ChIPSeq
GO
rtracklayer
CAMERA
chipseq
Gviz
ChIPSeq
GO
rtracklayer
CAMERA
chipseq
Gviz
updated 12.8 years ago by
Robert Ivanek
▴ 750 • written 12.8 years ago by
Guest User
★ 13k
0
votes
8
replies
2.6k
views
chip-seq data
ChIPSeq
chipseq
BayesPeak
ChIPSeq
chipseq
BayesPeak
13.4 years ago
John linux-user
▴ 210
0
votes
0
replies
1.9k
views
[job] Postdoc position on the bioinfomatics of epigenetic circuits in genome programming and reprogramming at the European Institute of Oncology in M…
RNASeq
ChIPSeq
Epigenetics
Cancer
chipseq
SANTA
RNASeq
ChIPSeq
Epigenetics
Cancer
SANTA
14.5 years ago
stefano iacus
▴ 430
0
votes
0
replies
1.8k
views
PhD program in Computational Biology in Milan, Italy
ChIPSeq
chipseq
ChIPSeq
chipseq
14.5 years ago
mattia pelizzola
▴ 200
0
votes
7
replies
2.5k
views
error in bayespeak function
ChIPSeq
GO
BSgenome
BSgenome
chipseq
BayesPeak
ChIPSeq
GO
BSgenome
BSgenome
chipseq
updated 14.6 years ago by
Jonathan Cairns
▴ 130 • written 14.6 years ago by
Andreia Fonseca
▴ 810
0
votes
0
replies
1.2k
views
ChIPpeakAnno package - filter annotatedPeak for GO enrichment analysis
ChIPSeq
Annotation
GO
biomaRt
chipseq
ChIPpeakAnno
ChIPSeq
Annotation
GO
biomaRt
chipseq
14.6 years ago
Julie Zhu
★ 4.3k
0
votes
0
replies
960
views
choice of biomaRt feature from annotatePeakInBatch
ChIPSeq
Annotation
biomaRt
chipseq
ChIPpeakAnno
ChIPSeq
Annotation
biomaRt
chipseq
14.6 years ago
Julie Zhu
★ 4.3k
0
votes
0
replies
1.2k
views
ChIPpeakAnno -findOverlappingPeaks
ChIPSeq
chipseq
ChIPpeakAnno
ChIPSeq
chipseq
ChIPpeakAnno
15.4 years ago
Julie Zhu
★ 4.3k
0
votes
2
replies
1.6k
views
ChIPpeakAnno - VennDiagram P-value - NaN
ChIPSeq
chipseq
ChIPpeakAnno
ChIPSeq
chipseq
ChIPpeakAnno
15.4 years ago
Julie Zhu
★ 4.3k
0
votes
1
reply
1.4k
views
Involve tag count information in coverage function (IRanges, chipseq package)?
ChIPSeq
Coverage
chipseq
ChIPSeq
Coverage
chipseq
15.5 years ago
Xiaohui Wu
▴ 280
0
votes
2
replies
1.3k
views
mypeaklist in ChIPpeakAnno
ChIPSeq
chipseq
ChIPSeq
chipseq
15.5 years ago
Julie Zhu
★ 4.3k
0
votes
0
replies
1.3k
views
ChIPpeakAnno - VennDiagram P-value - NaN
ChIPSeq
chipseq
ChIPpeakAnno
ChIPSeq
chipseq
ChIPpeakAnno
15.5 years ago
Julie Zhu
★ 4.3k
0
votes
0
replies
1.1k
views
ChIPpeakAnno Paper - Example Dataset not found
Transcription
ChIPSeq
Annotation
chipseq
genomes
Transcription
ChIPSeq
Annotation
chipseq
15.6 years ago
Julie Zhu
★ 4.3k
0
votes
2
replies
1.8k
views
chip-seq data analysis
Transcription
ChIPSeq
Alignment
chipseq
Transcription
ChIPSeq
Alignment
chipseq
updated 15.9 years ago by
Sean Davis
21k • written 15.9 years ago by
Tiandao Li
▴ 60
0
votes
0
replies
1.0k
views
ChIPpeakAnnot -names field requried
ChIPSeq
chipseq
ChIPSeq
chipseq
16.1 years ago
Julie Zhu
★ 4.3k
0
votes
1
reply
1.1k
views
"islands" and number of reads in the island in package chipseq/ShortRead
ChIPSeq
Coverage
chipseq
ChIPSeq
Coverage
chipseq
updated 16.2 years ago by
Kasper Daniel Hansen
★ 6.5k • written 16.2 years ago by
Nora Rieber
▴ 40
0
votes
1
reply
1.4k
views
How to install chipseq package
ChIPSeq
chipseq
ChIPSeq
chipseq
updated 17.0 years ago by
Patrick Aboyoun
★ 1.6k • written 17.0 years ago by
Yuan Hao
▴ 90
195 results • Page
4 of 4
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Comment: DiffBind plot.profile error
by
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• 0
To resolve technical errors like installation failures or login issues, first ensure your device allows in the security settings and that…
Comment: soGGi error
by
shepherl
4.3k
We have tried to contact the soGGi maintainer to have them update the package to the newer version of gglot2 but they have so far been unre…
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by
Gordon Smyth
53k
No, `trend.var=TRUE` and `trend=TRUE` are not needed in any voom pipeline, because the trend is already incorporated into the voom weights.
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Do you need to set trend.var=TRUE when using camera in the limma-voom pipeline with RNA-Seq data (as apposed to limma-trend pipeline)?
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Comment: using limma trend workflow in CAMERA
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