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cossardg
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Javad_Sadeghi
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4.8 years ago
wrzl
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updated 3.4 years ago by
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Does DiffBind correctly designate peaks with very small fold-change to be statistically significant?
updated 4.5 years ago by
Rory Stark
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written 4.9 years ago by
Sam
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updated 4.9 years ago by
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lessismore
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written 4.9 years ago by
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updated 4.9 years ago by
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written 4.9 years ago by
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updated 4.9 years ago by
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updated 4.9 years ago by
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written 4.9 years ago by
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4.9 years ago
Dejian Zhao
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updated 4.9 years ago by
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updated 4.9 years ago by
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rbronste
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updated 4.9 years ago by
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written 4.9 years ago by
heikki.sarin
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updated 4.2 years ago by
Michael
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written 4.9 years ago by
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updated 4.9 years ago by
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written 4.9 years ago by
L_K
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4.9 years ago
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updated 5.0 years ago by
Gordon Smyth
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written 5.0 years ago by
prabin.dm
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updated 5.0 years ago by
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georgina.fqw
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updated 5.0 years ago by
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written 5.0 years ago by
Ian
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updated 4.9 years ago by
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written 5.0 years ago by
didemdkn
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updated 5.0 years ago by
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Bine
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Recent ...
Replies
Answer: two questions about limma
by
Gordon Smyth
53k
Answered here: https://support.bioconductor.org/p/16318/
Comment: Highly similar RNA-seq samples in PCA - pooling or technical duplication?
by
Ahmed Salah
•
0
Thank you very much! will take that into consideration
Comment: Large logFC but somewhat high FDR
by
JKim
•
0
Thank you very much for taking the time to answer the question. I really appreciate your insights and comments.
Comment: upstream git branches of bioc-release
by
Jeroen
▴
10
OK I have updated https://bioc-release.r-universe.dev accordingly. Let me know if you find version differences when mirroring binaries.
Comment: Large logFC but somewhat high FDR
by
Gordon Smyth
53k
I don't know what `tp1` is. The relevant histogram would be:
```
hist(fit2$p.value[,"KO_vs_WT"])
```
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