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Decipher
•
reset
1
vote
3
replies
724
views
Non-zero exit status error when installing GenomeInfoDbData
DECIPHER
GenomeInfoDbData
Bioconductor
GenomeInfoDb
written 3 months ago by
dbjohnson7
• 0
0
votes
2
replies
370
views
DECIPHER::idTaxa - broken link to download GTDB r220 (modified) trainig set
DECIPHER
6 months ago
makala
• 0
0
votes
0
replies
426
views
LearnTaxa with custom Silva
DECIPHER
LearnTaxa
7 months ago
Eryn
• 0
0
votes
2
replies
1.1k
views
convert sequences disambiguated with DECIPHER back to FASTA
DECIPHER
FASTA
disambiguate
written 4.5 years ago by
joannew
• 0
0
votes
3
replies
1.1k
views
DECIPHER IdTaxa: Speed up training?
DECIPHER
idtaxa
updated 16 months ago by
Erik Wright
▴ 150 • written 17 months ago by
Till
▴ 30
3
votes
5
replies
2.2k
views
Error: 'IdClusters'
DECIPHER
updated 18 months ago by
Ling-Hsiu
▴ 10 • written 21 months ago by
julieta.micorriza
• 0
0
votes
0
replies
511
views
Updating 16S training set with LearnTaxa
DECIPHER
23 months ago
Connor
• 0
0
votes
3
replies
1.3k
views
Problem with multiple sequence alignment using AlignSeqs
R
dada2
DECIPHER
updated 23 months ago by
Erik Wright
▴ 150 • written 23 months ago by
Nelli
• 0
0
votes
1
reply
908
views
OligoArrayAux fails to compile
DECIPHER
2.0 years ago • updated 24 months ago
fabian.roger08
▴ 10
0
votes
3
replies
1.5k
views
Issue::DesignPrimers DECIPHER
DECIPHER
DesignPrimers
updated 3.2 years ago by
slwmartin
• 0 • written 3.2 years ago by
Mailys
• 0
0
votes
1
reply
931
views
ORF finding in DECIPHER
ORF
DECIPHER
ORFhunteR
updated 3.4 years ago by
Erik Wright
▴ 150 • written 3.4 years ago by
tkirkland
• 0
0
votes
5
replies
2.5k
views
Do DECIPHER:IdTaxa / dada2::assignTaxonomy work with ambigious reference training set?
decipher
dada2
updated 3.5 years ago by
fabian.roger08
▴ 10 • written 4.8 years ago by
fabian.roger
• 0
0
votes
5
replies
1.8k
views
DECIPHER maximum allowable size
DECIPHER
Alignment
alig
updated 3.5 years ago by
Erik Wright
▴ 150 • written 3.5 years ago by
curiousmind007
▴ 10
0
votes
0
replies
1.1k
views
DECIPHER Package on dada2 -Implementing Silva_metaxa2 training set from qza file into a fastq.gz/.Rdata
DECIPHER
dada2
3.6 years ago
anrongloh
• 0
0
votes
1
reply
1.0k
views
Defining groups in Decipher by sequence position in the database (FASTA)
DefiningGroups
RStudio
DECIPHER
Specificprimers
updated 3.8 years ago by
Erik Wright
▴ 150 • written 3.8 years ago by
noeliaruizalonso23
• 0
0
votes
5
replies
2.0k
views
Program not properly installed/program not accessible by system
R
decipher
updated 3.7 years ago by
Erik Wright
▴ 150 • written 4.6 years ago by
hoonhuiyi
• 0
0
votes
0
replies
962
views
DECIPHER Probe Design Questions
DECIPHER
4.0 years ago
henry1995910343
• 0
0
votes
2
replies
970
views
insufficient alignment
DECIPHER
Alignment
4.0 years ago
julius_vn
• 0
0
votes
3
replies
2.0k
views
DECIPHER save alignement in outputs
msa
decipher
output
prettyPrint
updated 4.2 years ago by
UBod
▴ 300 • written 4.2 years ago by
matamunee
• 0
1
vote
6
replies
2.2k
views
Issue with DECIPHER::IdTaxa
DECIPHER
IdTaxa
4.2 years ago
sebastian.mynott
• 0
0
votes
2
replies
1.1k
views
how to design probes using decipher
R
decipher
4.6 years ago
hoonhuiyi
• 0
0
votes
5
replies
4.3k
views
Error in (function (classes, fdef, mtable)
software error
DECIPHER
updated 4.6 years ago by
shepherl
4.1k • written 4.6 years ago by
hoonhuiyi
• 0
0
votes
21
replies
3.4k
views
How to use DECIPHER to design group-specific primers
Decipher
4.6 years ago
hoonhuiyi
• 0
0
votes
1
reply
1.1k
views
DECIPHER::AlignSeqs fails with a large guide tree
DECIPHER
updated 4.9 years ago by
Erik Wright
▴ 150 • written 4.9 years ago by
brendan.furneaux
▴ 10
0
votes
1
reply
874
views
PCR simulation with PNAs
PCR
DECIPHER
PNA
5.2 years ago
marissaruthlee
• 0
1
vote
2
replies
1.7k
views
Display BrowseSeqs output in R Notebook?
BrowseSeqs
DECIPHER
notebook
rmarkdown
updated 5.2 years ago by
Erik Wright
▴ 150 • written 5.2 years ago by
lauren.fitch
• 0
0
votes
0
replies
855
views
Alignment larger than the maximum allowable size
DECIPHER
updated 5.4 years ago by
shepherl
4.1k • written 5.4 years ago by
cmasembe
• 0
2
votes
4
replies
2.1k
views
How to get sequence homology percent from a multiple sequence alignment in DECIPHER?
decipher
r
protein alignment
6.6 years ago
reubenmcgregor88
• 0
2
votes
2
replies
2.3k
views
How to combine sequences from different stringsets?
biostrings
decipher
updated 6.8 years ago by
Mike Smith
★ 6.6k • written 6.8 years ago by
reubenmcgregor88
• 0
1
vote
3
replies
1.4k
views
Transform index to chromosome in DECIPHER package
decipher
updated 6.9 years ago by
Erik Wright
▴ 150 • written 6.9 years ago by
Vinicius Henrique da Silva
▴ 40
5
votes
7
replies
1.9k
views
Is it possible to do an alignment to a chosen reference sequence in DECIPHER?
R
decipher
biostrings
updated 6.9 years ago by
Erik Wright
▴ 150 • written 6.9 years ago by
reubenmcgregor88
• 0
0
votes
2
replies
1.2k
views
Is it possible to import many .tsr sequence file into R using bio strings for use in DECIPHER?
r
biostrings
decipher
6.9 years ago
reubenmcgregor88
• 0
2
votes
5
replies
1.9k
views
Colour a phylogenetic tree, based on column in DECIPHER?
r
decipher
biostrings
updated 6.9 years ago by
Erik Wright
▴ 150 • written 6.9 years ago by
reubenmcgregor88
• 0
2
votes
3
replies
2.1k
views
Is it possible to import a multiple fasta alignemnt (.mfa) file into DECIPHER?
decipher
DNA
biostrings
updated 6.9 years ago by
Erik Wright
▴ 150 • written 6.9 years ago by
reubenmcgregor88
• 0
0
votes
1
reply
1.4k
views
DECIPHER - AlignSeqs error is.leaf(dend) node stack overflow
decipher
alignment
updated 7.1 years ago by
Erik Wright
▴ 10 • written 7.1 years ago by
emma.berdan
• 0
0
votes
1
reply
1.8k
views
AlignSeqs error: protect(): protection stack overflow
multiplealignment
decipher
7.1 years ago
c.l.frankling
• 0
2
votes
5
replies
2.1k
views
Multiple Sequence Alignment using DNA sequence
msa
decipher
7.5 years ago
bbista91
▴ 10
1
vote
5
replies
1.8k
views
DECIPHER version bug using biocLite()
DECIPHER
8.5 years ago
Vinicius Henrique da Silva
▴ 40
0
votes
1
reply
1.1k
views
Possible bug in ConsensusSequence
DECIPHER
updated 8.6 years ago by
Erik Wright
▴ 10 • written 8.6 years ago by
rob.lanfear
• 0
0
votes
3
replies
2.9k
views
mt.teststat
multtest
DECIPHER
multtest
DECIPHER
updated 8.9 years ago by
Smeeta Shrestha
▴ 20 • written 21.6 years ago by
Park, Richard
▴ 220
0
votes
0
replies
1.7k
views
Job: Bioinformatics Postdoc Position at the IMB, Mainz
Genetics
DECIPHER
Genetics
DECIPHER
10.7 years ago
Kathi Zarnack
▴ 110
0
votes
1
reply
1.3k
views
Agi4x44PreProcess: Replicated Genes and Custom Annotation Database
Annotation
zebrafish
probe
DECIPHER
Annotation
zebrafish
probe
DECIPHER
updated 14.3 years ago by
Marc Carlson
★ 7.2k • written 14.3 years ago by
Samantha England
▴ 40
0
votes
1
reply
2.0k
views
boxplot error with expression set using oligo package and Human gene st 1.0 arrays
oligo
DECIPHER
oligo
DECIPHER
updated 14.5 years ago by
Benilton Carvalho
★ 4.3k • written 14.5 years ago by
jos matejus
▴ 40
0
votes
0
replies
1.3k
views
Basic Question about gcrma & exporting to excel > (command not working)
Microarray
affy
gcrma
oligo
arrayQualityMetrics
DECIPHER
Microarray
affy
gcrma
oligo
14.5 years ago
Dick Beyer
★ 1.4k
0
votes
0
replies
1.6k
views
'Heat Map for Genes in Dataset' in the '(project name).global.plots.pdf' output of the R-GSEA code
Genetics
Clustering
DECIPHER
Genetics
Clustering
DECIPHER
14.7 years ago
Radek Blatny
▴ 60
0
votes
0
replies
1.8k
views
Post-doc position in Paris
Sequencing
Epigenetics
Cancer
Breast
DECIPHER
Sequencing
Epigenetics
Cancer
Breast
15.4 years ago
Joern Toedling
▴ 450
0
votes
4
replies
1.5k
views
help with large Rgraphviz output
graph
DECIPHER
graph
DECIPHER
updated 18.5 years ago by
Seth Falcon
★ 7.4k • written 18.5 years ago by
Kimpel, Mark W
▴ 890
47 results • Page
1 of 1
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Comment: CleanUpRNAseq with a GTF that is missing mitochondria annotation data
by
rcreed
• 0
The updated version worked well on my data. Thank you!
Answer: DE analysis on Single cell RNA Seq time course data (using pseudotime) with 5 di
by
James W. MacDonald
67k
The two contrasts at the bottom are identical but for the sign of the logFC, so you should expect the same results (except for flipped sign…
Comment: Identical samples after deseq2 batch effect removal
by
Michael Love
42k
Oh, i didn't realize there is another method in the mix here. I would not necessarily trust this "batch correction" method, and suspect o…
Comment: Identifying potentially associated gene set to drug response using GSVA
by
Kent
• 0
Hi @robertc thanks for the reply. I should have explained to you the context first. I am testing over a hundred drugs on patient samples (s…
Answer: BiocNeighbours Utility for k-Nearest Neighbour Classification
by
James W. MacDonald
67k
You can easily answer this question yourself. ``` > library(BiocPkgTools) Loading required package: htmlwidgets > depdf <- buildPkgDe…
Votes
Answer: CleanUpRNAseq with a GTF that is missing mitochondria annotation data
Answer: CleanUpRNAseq with a GTF that is missing mitochondria annotation data
A: TopGO: How to retrieve the gene list related to a GO ID ?
A: Error in DESeqDataSet : some values in assay are not integers
A: correcting the batch effects in Limma and SVA
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