Log In
Sign Up
about
faq
Ask a question
Latest
News
Jobs
Tutorials
Tags
Users
New Post
Latest
News
Jobs
Tutorials
Tags
Users
Log In
Sign Up
About
Limit
all time
today
this week
this month
this year
Unanswered
All posts
Sort
Update
Answers
Bookmarks
Creation
Replies
Rank
Views
Votes
Showing :
DelayedArray
•
reset
1
vote
5
replies
2.0k
views
rowsum or similar for RleArray?
delayedarray
rowsum
written 7.5 years ago by
maltethodberg
▴ 180
1
vote
6
replies
1.2k
views
DelayedArray::read_sparse_block
DelayedArray
updated 17 months ago by
Hervé Pagès
16k • written 18 months ago by
Koki
▴ 10
1
vote
6
replies
2.0k
views
Unusually long running times for getMeth function since latest release
bsseq
delayedarray
updated 7.6 years ago by
Peter Hickey
▴ 750 • written 7.6 years ago by
Alejandro Reyes
★ 1.9k
3
votes
8
replies
3.5k
views
Tutorial:
"developing" with HDF5Array
hdf5
DelayedArray
summarizedexperiment
Tutorial
8.0 years ago
Vincent J. Carey, Jr.
6.7k
2
votes
2
replies
1.4k
views
how to combine multiple DelayedArray to a high dimension array
delayedarray
updated 6.9 years ago by
Peter Hickey
▴ 750 • written 6.9 years ago by
Ou, Jianhong
★ 1.3k
0
votes
1
reply
1.3k
views
DelayedArray install fails to UNC path
delayedarray
bug
installation
updated 6.5 years ago by
Martin Morgan
25k • written 6.6 years ago by
simon.andrews
• 0
8
votes
8
replies
2.0k
views
DelayedArray seeds: SolidRleArraySeed vs ChunkedRleArraySeed vs DataFrame of Rle's
delayedarray
delayedmatrixstats
updated 6.3 years ago by
Peter Hickey
▴ 750 • written 6.3 years ago by
maltethodberg
▴ 180
4
votes
3
replies
1.4k
views
Best way of creating a large RleMatrix
DelayedArray
RleMatrix
updated 6.1 years ago by
Hervé Pagès
16k • written 6.3 years ago by
maltethodberg
▴ 180
2
votes
1
reply
1.4k
views
scater::runPCA() errors on DelayedMatrix (DelayedArray:::.check_Ops_vector_arg_length)
scater
BiocSingular
DelayedArray
updated 5.7 years ago by
Aaron Lun
★ 28k • written 5.7 years ago by
kevin.rue
▴ 350
1
vote
3
replies
1.9k
views
Troubles with barcodeRanks()
DropletUtils
SingleCellExperiement
DelayedArray
simpleSingleCell
updated 5.7 years ago by
Aaron Lun
★ 28k • written 5.7 years ago by
Steve Pederson
▴ 170
2
votes
8
replies
3.2k
views
DelayedArray loading Warning causes stop in Bioconductor 3.12
DelayedArray
warning
installation
updated 4.7 years ago by
Hervé Pagès
16k • written 4.7 years ago by
inzirio
▴ 10
11
votes
5
replies
1.4k
views
Building an HDF5Array/DelayedArray object incrementally
delayedarray
updated 4.4 years ago by
James W. MacDonald
68k • written 4.4 years ago by
Stephen Piccolo
▴ 600
2
votes
3
replies
1.4k
views
Generating a DelayedArray with a size greater than .Machine$integer.max
bit64
HDF5Array
DelayedArray
updated 3.6 years ago by
Hervé Pagès
16k • written 3.7 years ago by
Koki
▴ 10
2
votes
5
replies
1.9k
views
SparseArray unable to install on Bioc 3.18
DESeq2
SummarizedExperiment
SparseArray
Install
DelayedArray
updated 15 months ago by
Michael Love
43k • written 15 months ago by
eg226
• 0
4
votes
4
replies
1.7k
views
remove NA's from a DelayedArray
delayedarray
updated 7.4 years ago by
Hervé Pagès
16k • written 7.4 years ago by
maltethodberg
▴ 180
2
votes
6
replies
1.8k
views
Plans for multicore block processing in DelayedArray?
delayedarray
updated 7.4 years ago by
Hervé Pagès
16k • written 7.4 years ago by
maltethodberg
▴ 180
7
votes
4
replies
1.9k
views
From RleList to RleArray
delayedarray
rlelist
rle
updated 7.3 years ago by
Peter Hickey
▴ 750 • written 7.3 years ago by
davide risso
▴ 980
2
votes
4
replies
2.5k
views
SummarizedExperiment is now warning on attach about `read_block` namespace conflict
SummarizedExperiment
S4Arrays
DelayedArray
updated 20 months ago by
Hervé Pagès
16k • written 21 months ago by
Michael Steinbaugh
▴ 90
2
votes
3
replies
579
views
EBImage Rendering of a DelayedArray Object
DelayedArray
EBImage
cytomapper
updated 5 months ago by
Wolfgang Huber
★ 13k • written 6 months ago by
Dario Strbenac
★ 1.6k
5
votes
1
reply
3.5k
views
How to save `SingleCellExperiment` with `DelayedArray` assay(s) in a portable format?
HDF5Array
SingleCellExperiment
DelayedArray
2.5 years ago
merv
▴ 150
1
vote
1
reply
1.4k
views
Could not find function ".read_block_OLD"
DelayedArray
S4Arrays
updated 21 months ago by
Hervé Pagès
16k • written 21 months ago by
xiuwen.zheng
• 0
0
votes
1
reply
2.9k
views
DESeq2 in R 4.2.2
DESeq2
SummarizedExperiment
DelayedArray
updated 2.1 years ago by
ATpoint
★ 4.7k • written 2.1 years ago by
Danielle
• 0
0
votes
8
replies
1.8k
views
Support of parquet files for on-disk Bioconductor objects
DelayedArray
TileDBArray
17 months ago
sandmann.t
▴ 70
3
votes
5
replies
1.7k
views
Block processing matrices of different dimensions with DelayedArray
HDF5Array
DelayedArray
updated 3.7 years ago by
Hervé Pagès
16k • written 3.7 years ago by
Pedro Baldoni
▴ 40
4
votes
3
replies
1.4k
views
Temporal directory setting for DelayedArray
HDF5Array
DelayedArray
3.6 years ago
Koki
▴ 10
4
votes
13
replies
2.5k
views
Speeding up of DelayedArray::write_block()
HDF5Array
DelayedArray
updated 16 months ago by
Hervé Pagès
16k • written 3.4 years ago by
Koki
▴ 10
4
votes
3
replies
2.3k
views
Efficiently working with HDF5-backed SingleCellExperiments
HDF5Array
SingleCellExperiment
DelayedArray
2.4 years ago
merv
▴ 150
1
vote
2
replies
1.4k
views
Error: C stack usage of HDF5Array
DelayedArray
HDF5Array
3.8 years ago
Koki
▴ 10
2
votes
6
replies
1.8k
views
"dim<-" against on-disk arrays
DelayedArray
TileDBArray
HDF5Array
updated 3.7 years ago by
Hervé Pagès
16k • written 3.8 years ago by
Koki
▴ 10
2
votes
4
replies
1.4k
views
`aperm`, `realize`, `writeHDF5Array`, and `ReshapedHDF5Array` are block size aware?
HDF5Array
DelayedArray
3.8 years ago
Koki
▴ 10
9
votes
8
replies
1.9k
views
Processing time of blockApply and DelayedArray
DelayedArray
HDF5Array
updated 3.7 years ago by
Hervé Pagès
16k • written 3.7 years ago by
Pedro Baldoni
▴ 40
1
vote
1
reply
2.5k
views
Problem installing DelayedArray
DelayedArray
updated 4.0 years ago by
Hervé Pagès
16k • written 4.0 years ago by
Dan Tenenbaum
★ 8.2k
0
votes
1
reply
927
views
Error in 1D DelayedArray, when the spacings is larger than 1
DelayedArray
3.7 years ago
Koki
▴ 10
0
votes
1
reply
1.5k
views
Error with dmrfinder bsseq after combining Bsseq obj
bsseq r package
dmrfinder
delayedarray
combine
7.6 years ago
br
• 0
0
votes
1
reply
2.1k
views
Installation of package DelayedArray had non-zero exit status
delayedarray
6.6 years ago
cristoforo-grasso
• 0
0
votes
0
replies
1.4k
views
Combining multiple MTX (matrix market) files to HDF5 Array format
HDF5Array
SingleCellExperiment
DelayedArray
2.5 years ago
merv
▴ 150
0
votes
1
reply
1.1k
views
How to incrementaly load the nzdata and nzindex from SparseArraySeed
TileDBArray
HDF5Array
DelayedArray
3.7 years ago
Koki
▴ 10
37 results • Page
1 of 1
Recent ...
Replies
Answer: Automatically install dependencies
by
ATpoint
★ 4.7k
The BiocManager, which is sort of an extended wrapper around `install.packages`, installs all R dependencies. If you see errors then this i…
Answer: To count or not to count multi-overlapping reads?
by
Gordon Smyth
52k
> How does it handle reads that map to a gene that is located in a region that also has another gene but on the alternate strand? Overlapp…
Comment: Weird p-values using DESeq2?
by
ATpoint
★ 4.7k
This does not look like normalized counts but raw counts. Consider using `counts(dds, normalized = TRUE)` or the output of `normTransform()…
Answer: Weird p-values using DESeq2?
by
Wolfgang Huber
★ 13k
Dear Ingrid, thank you for asking. Can you provide the input count matrix (you can "pseudonymize" the biological conditions and the gene n…
Comment: How to visualize these pathways using pathview
by
ingrid.h
• 0
Yes I have seen it, thanks.
Votes
A: Fraction count for multi mapping reads; how to generate input file for Deseq2 fo
Comment: Weird p-values using DESeq2?
Comment: Overcoming confounding in batch effect correction
Answer: Store Matrix in DataFrame Cell
Answer: enrichGOgradient color change
Awards
• All
Popular Question
to
maltethodberg
▴ 180
Popular Question
to
abadgerw
• 0
Popular Question
to
Jim Nemesh
▴ 10
Popular Question
to
Wolfgang Huber
★ 13k
Teacher
to
James W. MacDonald
68k
Locations
• All
The city by the bay,
39 minutes ago
Canada,
1 hour ago
Denmark,
1 hour ago
United States,
3 hours ago
WEHI, Melbourne, Australia,
4 hours ago
Traffic: 554 users visited in the last hour
Content
Search
Users
Tags
Badges
Help
About
FAQ
Access
RSS
API
Stats
Use of this site constitutes acceptance of our
User Agreement and Privacy Policy
.
Powered by the
version 2.3.6