Showing : DelayedArray • reset
3
votes
8
replies
4.1k
views
Tutorial: "developing" with HDF5Array
hdf5 DelayedArray summarizedexperiment Tutorial
8.9 years ago Vincent J. Carey, Jr. 6.7k
5
votes
1
reply
4.0k
views
How to save `SingleCellExperiment` with `DelayedArray` assay(s) in a portable format?
HDF5Array SingleCellExperiment DelayedArray
3.3 years ago merv ▴ 150
2
votes
8
replies
3.9k
views
DelayedArray loading Warning causes stop in Bioconductor 3.12
DelayedArray warning installation
updated 5.5 years ago by 16k • written 5.5 years ago by ▴ 10
0
votes
11
replies
3.5k
views
Support of parquet files for on-disk Bioconductor objects
DelayedArray TileDBArray
updated 3 months ago by • 0 • written 2.3 years ago by ▴ 70
0
votes
1
reply
3.4k
views
DESeq2 in R 4.2.2
DESeq2 SummarizedExperiment DelayedArray
updated 2.9 years ago by ★ 5.0k • written 2.9 years ago by • 0
4
votes
13
replies
3.3k
views
Speeding up of DelayedArray::write_block()
HDF5Array DelayedArray
updated 2.2 years ago by 16k • written 4.2 years ago by ▴ 10
2
votes
4
replies
3.0k
views
SummarizedExperiment is now warning on attach about `read_block` namespace conflict
SummarizedExperiment S4Arrays DelayedArray
updated 2.5 years ago by 16k • written 2.6 years ago by ▴ 90
4
votes
3
replies
2.8k
views
Efficiently working with HDF5-backed SingleCellExperiments
HDF5Array SingleCellExperiment DelayedArray
3.3 years ago • updated 3.2 years ago merv ▴ 150
1
vote
1
reply
2.8k
views
Problem installing DelayedArray
DelayedArray
updated 4.8 years ago by 16k • written 4.8 years ago by ★ 8.2k
2
votes
5
replies
2.6k
views
SparseArray unable to install on Bioc 3.18
DESeq2 SummarizedExperiment SparseArray Install DelayedArray
updated 2.1 years ago by 43k • written 2.1 years ago by • 0
8
votes
8
replies
2.4k
views
DelayedArray seeds: SolidRleArraySeed vs ChunkedRleArraySeed vs DataFrame of Rle's
delayedarray delayedmatrixstats
updated 7.2 years ago by ▴ 760 • written 7.2 years ago by ▴ 180
9
votes
8
replies
2.4k
views
Processing time of blockApply and DelayedArray
DelayedArray HDF5Array
updated 4.5 years ago by 16k • written 4.6 years ago by ▴ 40
1
vote
6
replies
2.4k
views
Unusually long running times for getMeth function since latest release
bsseq delayedarray
updated 8.5 years ago by ▴ 760 • written 8.5 years ago by ★ 1.9k
0
votes
1
reply
2.4k
views
Installation of package DelayedArray had non-zero exit status
delayedarray
7.4 years ago cristoforo-grasso • 0
1
vote
5
replies
2.4k
views
rowsum or similar for RleArray?
delayedarray rowsum
written 8.3 years ago by ▴ 180
1
vote
3
replies
2.2k
views
Troubles with barcodeRanks()
DropletUtils SingleCellExperiement DelayedArray simpleSingleCell
updated 6.6 years ago by ★ 29k • written 6.6 years ago by ▴ 170
7
votes
4
replies
2.2k
views
From RleList to RleArray
delayedarray rlelist rle
updated 8.1 years ago by ▴ 760 • written 8.1 years ago by ▴ 980
2
votes
6
replies
2.2k
views
"dim<-" against on-disk arrays
DelayedArray TileDBArray HDF5Array
updated 4.5 years ago by 16k • written 4.6 years ago by ▴ 10
3
votes
5
replies
2.1k
views
Block processing matrices of different dimensions with DelayedArray
HDF5Array DelayedArray
updated 4.5 years ago by 16k • written 4.5 years ago by ▴ 40
2
votes
6
replies
2.1k
views
Plans for multicore block processing in DelayedArray?
delayedarray
updated 8.2 years ago by 16k • written 8.2 years ago by ▴ 180
4
votes
4
replies
2.0k
views
remove NA's from a DelayedArray
delayedarray
updated 8.2 years ago by 16k • written 8.2 years ago by ▴ 180
11
votes
5
replies
1.8k
views
Building an HDF5Array/DelayedArray object incrementally
delayedarray
updated 5.2 years ago by 68k • written 5.2 years ago by ▴ 600
0
votes
0
replies
1.8k
views
Combining multiple MTX (matrix market) files to HDF5 Array format
HDF5Array SingleCellExperiment DelayedArray
3.3 years ago merv ▴ 150
0
votes
1
reply
1.8k
views
Error with dmrfinder bsseq after combining Bsseq obj
bsseq r package dmrfinder delayedarray combine
8.4 years ago br • 0
2
votes
4
replies
1.7k
views
`aperm`, `realize`, `writeHDF5Array`, and `ReshapedHDF5Array` are block size aware?
HDF5Array DelayedArray
4.6 years ago Koki ▴ 10
2
votes
3
replies
1.7k
views
Generating a DelayedArray with a size greater than .Machine$integer.max
bit64 HDF5Array DelayedArray
updated 4.5 years ago by 16k • written 4.5 years ago by ▴ 10
1
vote
2
replies
1.7k
views
Error: C stack usage of HDF5Array
DelayedArray HDF5Array
4.6 years ago Koki ▴ 10
2
votes
2
replies
1.7k
views
how to combine multiple DelayedArray to a high dimension array
delayedarray
updated 7.8 years ago by ▴ 760 • written 7.8 years ago by ★ 1.3k
4
votes
3
replies
1.6k
views
Best way of creating a large RleMatrix
DelayedArray RleMatrix
updated 7.0 years ago by 16k • written 7.1 years ago by ▴ 180
2
votes
1
reply
1.6k
views
scater::runPCA() errors on DelayedMatrix (DelayedArray:::.check_Ops_vector_arg_length)
scater BiocSingular DelayedArray
updated 6.6 years ago by ★ 29k • written 6.6 years ago by ▴ 350
1
vote
1
reply
1.6k
views
Could not find function ".read_block_OLD"
DelayedArray S4Arrays
updated 2.6 years ago by 16k • written 2.6 years ago by • 0
0
votes
1
reply
1.6k
views
DelayedArray install fails to UNC path
delayedarray bug installation
updated 7.4 years ago by 25k • written 7.4 years ago by • 0
4
votes
3
replies
1.6k
views
Temporal directory setting for DelayedArray
HDF5Array DelayedArray
4.4 years ago Koki ▴ 10
1
vote
6
replies
1.6k
views
DelayedArray::read_sparse_block
DelayedArray
updated 2.2 years ago by 16k • written 2.3 years ago by ▴ 10
0
votes
1
reply
1.3k
views
How to incrementaly load the nzdata and nzindex from SparseArraySeed
TileDBArray HDF5Array DelayedArray
4.5 years ago Koki ▴ 10
0
votes
1
reply
1.1k
views
Error in 1D DelayedArray, when the spacings is larger than 1
DelayedArray
4.5 years ago Koki ▴ 10
2
votes
3
replies
932
views
EBImage Rendering of a DelayedArray Object
DelayedArray EBImage cytomapper
updated 7 months ago by 16k • written 16 months ago by ★ 1.6k
37 results • Page 1 of 1
Recent ...
Replies
Answer: NUPOP usage by shepherl 4.2k
You should read the documentation in the package especially the package vignette https://bioconductor.org/packages/release/bioc/html/NuPoP.…
Comment: How can I correctly use phyloseq with Docker? by fnfgame • 0
In a rocker image, this error usually means the Bioconductor install happened as root but the runtime library paths used by the shiny user …
Comment: DECIPHER DesignProbes unable to design FISH-probes by Erik Wright ▴ 150
Are the sequences aligned (i.e., the same width) before running `TileSeqs()`?
Comment: BiocParallel (and DESeq2) - wrong args for environment subassignment by Michael Love 43k
BTW, I tested with no issue on MacOS ARM on our previous github issue.
Answer: DESeq(dds, parallel=TRUE) wrong args for environment subassignment by Michael Love 43k
The DESeq2 error makes sense, as we've talked about, given that the simple `bplapply` isn't working in your setup. Maybe give the traceb…
Votes
C: DESeq2 Following RSEM
Upcoming Ensembl API and data access changes - new blog post available
Comment: Highly similar RNA-seq samples in PCA - pooling or technical duplication?
Answer: Large logFC but somewhat high FDR
Comment: upstream git branches of bioc-release
Awards • All
Popular Question to Gordon Smyth 53k
Popular Question to Michael Love 43k
Popular Question to Luca • 0
Popular Question to Lluís Revilla Sancho ▴ 760
Popular Question to James W. MacDonald 68k
Locations • All
The city by the bay, 3 minutes ago
WEHI, Melbourne, Australia, 1 hour ago
United States, 1 hour ago
United States, 2 hours ago
United States, 3 hours ago
Traffic: 649 users visited in the last hour
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6