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EnhancedVolcano
•
reset
0
votes
0
replies
278
views
Y-axis break ihn Volcano Plot
EnhancedVolcano
Y-axis_break
Volcano_Plot
5 months ago
rajdeepboral00
• 0
0
votes
7
replies
2.0k
views
EnhancedVolcano results in an empty plot
EnhancedVolcano
18 months ago
Patadù
▴ 20
1
vote
7
replies
1.2k
views
Math expression in shapeCustom legend in EnhancedVolcano
EnhancedVolcano
19 months ago
pl23
• 0
0
votes
2
replies
2.8k
views
EnhancedVolcano with labels based on log2 Fold Change
EnhancedVolcano
written 24 months ago by
sara.jacobson
• 0
0
votes
4
replies
2.2k
views
enhanced volcano , different -log10pvalue of the same gene
EnhancedVolcano
RNASeqData
DifferentialExpression
2.6 years ago
ruba-mahmoud
• 0
4
votes
5
replies
3.6k
views
EnhancedVolcano - Unable to customize the length of Connectors to Gene Labels
Transcriptomics
EnhancedVolcano
updated 2.7 years ago by
Kevin Blighe
★ 4.0k • written 2.7 years ago by
Peter
▴ 20
0
votes
1
reply
907
views
Error in names(label_color[label_color == "organe"]) <- "lysosome" : 'names' attribute [1] must be the same length as the vector [0]
EnhancedVolcano
updated 2.7 years ago by
elefth.pavlos
▴ 40 • written 2.7 years ago by
Phương Thùy
• 0
2
votes
2
replies
2.6k
views
Overlay points with EnhancedVolcano R
EnhancedVolcano
updated 2.8 years ago by
Kevin Blighe
★ 4.0k • written 2.8 years ago by
redafazazi
• 0
0
votes
2
replies
1.2k
views
Only display positive FC on volcano plot
EnhancedVolcano
updated 2.8 years ago by
Kevin Blighe
★ 4.0k • written 2.8 years ago by
Tanner
• 0
2
votes
4
replies
4.1k
views
EnhancedVolcano legendPosition error
EnhancedVolcano
updated 3.1 years ago by
elefth.pavlos
▴ 40 • written 3.1 years ago by
Allison
• 0
0
votes
2
replies
1.6k
views
Is it possible for the legend labels to be different from the Colcustom names?
EnhancedVolcano
enha
3.1 years ago
elefth.pavlos
▴ 40
0
votes
2
replies
1.7k
views
Unable to over/ride colour scheme with custom key-value pairs
EnhancedVolcano
updated 3.1 years ago by
Kevin Blighe
★ 4.0k • written 3.1 years ago by
patrirodry85
• 0
1
vote
1
reply
3.3k
views
Enhanced Volcano Error when drawing connectors
EnhancedVolcano
updated 3.2 years ago by
Kevin Blighe
★ 4.0k • written 3.2 years ago by
deena.maurer
• 0
0
votes
0
replies
963
views
MetaVolcanoR usage
limma
MetaVolcanoR
EnhancedVolcano
3.4 years ago
JAcky
• 0
0
votes
6
replies
3.6k
views
How to change all text, including point labels to Arial?
EnhancedVolcano
updated 3.5 years ago by
James W. MacDonald
68k • written 3.5 years ago by
junli1988
• 0
0
votes
3
replies
1.3k
views
change a column within a DESeq results object
EnhancedVolcano
updated 3.5 years ago by
Guido Hooiveld
★ 4.1k • written 3.5 years ago by
Matt
• 0
0
votes
5
replies
2.1k
views
Italicise
EnhancedVolcano
updated 3.5 years ago by
Kevin Blighe
★ 4.0k • written 3.5 years ago by
Pau
• 0
3
votes
5
replies
4.6k
views
Print EnhancedVolcano Plot as jpeg or similar in R Notebook
EnhancedVolcano
updated 3.6 years ago by
Kevin Blighe
★ 4.0k • written 3.6 years ago by
Bine
▴ 50
0
votes
0
replies
1.6k
views
Plotting Upregulated and down regulated genes in different colour
EnhancedVolcano
3.8 years ago
Somenath
• 0
1
vote
4
replies
2.3k
views
Issue with selectively labelling genes in the Enhanced Volcano package
EnhancedVolcano
updated 3.9 years ago by
Kevin Blighe
★ 4.0k • written 3.9 years ago by
Jonathan
▴ 10
1
vote
1
reply
1.8k
views
Issue with lengthConnectors in EnhancedVolcano
EnhancedVolcano
updated 23 months ago by
mohamad.hajo89
• 0 • written 4.0 years ago by
ikotlar
▴ 10
1
vote
3
replies
3.0k
views
Enhancedvolcano labels superimposed on points
EnhancedVolcano
updated 4.0 years ago by
Kevin Blighe
★ 4.0k • written 4.0 years ago by
acharest
• 0
0
votes
0
replies
1.1k
views
EnhancedVolcano, coloring of a subset of labels
EnhancedVolcano
4.1 years ago
bradyb
• 0
0
votes
2
replies
2.6k
views
ERROR installing EnhancedVolcano in R4.1
EnhancedVolcano
updated 4.2 years ago by
Kevin Blighe
★ 4.0k • written 4.2 years ago by
Raj
• 0
0
votes
5
replies
3.0k
views
EnhancedVolcano plot - labels
EnhancedVolcano
updated 4.2 years ago by
Kevin Blighe
★ 4.0k • written 4.2 years ago by
Johannes
• 0
5
votes
4
replies
8.1k
views
ylim and xlim in Enhanced Volcano
DESeq2
EnhancedVolcano
Bioconductor
updated 4.3 years ago by
Kevin Blighe
★ 4.0k • written 4.3 years ago by
Rachel
• 0
2
votes
6
replies
6.0k
views
How can I use geom_label_repel with EnhancedVolcano?
ggrepel
RNASeq
R
EnhancedVolcano
4.4 years ago
Loren
▴ 10
2
votes
1
reply
9.1k
views
EnhancedVolcano Label Question
RNASeq
EnhancedVolcano
DEGs
updated 4.5 years ago by
Kevin Blighe
★ 4.0k • written 4.5 years ago by
robledoj13
• 0
7
votes
8
replies
9.1k
views
Warning in EnhancedVolcano plot
volcano-plot
EnhancedVolcano
updated 4.6 years ago by
Kevin Blighe
★ 4.0k • written 4.7 years ago by
Assa Yeroslaviz
★ 1.5k
1
vote
4
replies
5.8k
views
EnhancedVolcano plot with colCustom
EnhancedVolcano
4.7 years ago • updated 4.6 years ago
Neeraja Vegesna
▴ 10
1
vote
1
reply
3.2k
views
Enhanced Volcano Plot Controlling Color Layers
EnhancedVolcano
4.7 years ago
dk0319
• 0
6
votes
9
replies
3.2k
views
How to better design a Volcano plot
EnhancedVolcano
updated 4.9 years ago by
Kevin Blighe
★ 4.0k • written 4.9 years ago by
suxxa
▴ 20
1
vote
8
replies
4.8k
views
Problem selectively labelling points in the Enhanced Volcano package
EnhancedVolcano
5.0 years ago
Peter
▴ 10
6
votes
8
replies
5.3k
views
Jitter p-values in volcano plot
EnhancedVolcano
DESeq2
updated 5.1 years ago by
Michael Love
43k • written 5.1 years ago by
philipp.rewe
▴ 20
4
votes
2
replies
4.0k
views
enhancedVolcano: Why are only a few of my select labels showing up?
enha
EnhancedVolcano
5.1 years ago
noahhelton98
▴ 20
3
votes
5
replies
3.4k
views
Volcano plot - select additional gene
EnhancedVolcano
RNASeqR
R
volcanoplot
updated 5.1 years ago by
Kevin Blighe
★ 4.0k • written 5.1 years ago by
camillab.
▴ 10
1
vote
12
replies
2.7k
views
EnhancedVolcano - highlight specific points by changing shape
enhancedvolcano
updated 5.2 years ago by
Kevin Blighe
★ 4.0k • written 5.2 years ago by
n.tear
▴ 20
0
votes
20
replies
4.9k
views
pointSize, labSize, and DrawConnectors error when plotting EnhancedVolcano
EnhancedVolcano
5.3 years ago • updated 4.9 years ago
knholm
• 0
1
vote
1
reply
3.6k
views
Increase text size of axis labels in EnhancedVolcano
EnhancedVolcano
updated 5.3 years ago by
Kevin Blighe
★ 4.0k • written 5.3 years ago by
knholm
• 0
4
votes
7
replies
3.7k
views
visualize significant upregultaed genes and downregultaed genes with different colors (EnhancedVolcano)
enhancedvolcano
updated 5.3 years ago by
Kevin Blighe
★ 4.0k • written 5.3 years ago by
gaom001
▴ 10
0
votes
3
replies
1.5k
views
Enhanced volcanoplots from DESeq2
EnhancedVolcano
updated 5.7 years ago by
Michael Love
43k • written 5.7 years ago by
rimss.khurana
• 0
1
vote
6
replies
25k
views
Log2FC data type error in EnhansedVolcano package
software error
enhancedvolcano
6.2 years ago
sauuyer
▴ 10
0
votes
9
replies
17k
views
How to generate a volcano plot when p-values from DESeq2 are zero?
deseq2
pvalue
visualization
enhancedvolcano
rnaseq
written 6.8 years ago by
ricardo3889
• 0
43 results • Page
1 of 1
Recent ...
Replies
Comment: DECIPHER DesignProbes unable to design FISH-probes
by
Erik Wright
▴ 150
Are the sequences aligned (i.e., the same width) before running `TileSeqs()`?
Comment: BiocParallel (and DESeq2) - wrong args for environment subassignment
by
Michael Love
43k
BTW, I tested with no issue on MacOS ARM on our previous github issue.
Answer: DESeq(dds, parallel=TRUE) wrong args for environment subassignment
by
Michael Love
43k
The DESeq2 error makes sense, as we've talked about, given that the simple `bplapply` isn't working in your setup. Maybe give the traceb…
Answer: PTM analysis in LIMPA
by
Gordon Smyth
53k
For PTM analysis, the usual quantification command dpcQuant() is replaced by dpcImpute(). Otherwise the limpa pipeline is the same as for a…
Answer: problem reading bam files into nucleR
by
James W. MacDonald
68k
The first step is to update to the current versions of R/Bioconductor and try again. It's possible that you have run into a bug that's alre…
Votes
C: DESeq2 Following RSEM
Upcoming Ensembl API and data access changes - new blog post available
Comment: Highly similar RNA-seq samples in PCA - pooling or technical duplication?
Answer: Large logFC but somewhat high FDR
Comment: upstream git branches of bioc-release
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