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enhancedvolcano
•
reset
0
votes
2
replies
54
views
Italicise
EnhancedVolcano
1 day ago • updated 20 hours ago
Pau
• 0
3
votes
5
replies
158
views
Print EnhancedVolcano Plot as jpeg or similar in R Notebook
EnhancedVolcano
updated 9 days ago by
Kevin Blighe
3.5k • written 9 days ago by
Bine
▴ 20
0
votes
0
replies
148
views
Plotting Upregulated and down regulated genes in different colour
EnhancedVolcano
3 months ago
Somenath
• 0
1
vote
4
replies
280
views
Issue with selectively labelling genes in the Enhanced Volcano package
EnhancedVolcano
updated 4 months ago by
Kevin Blighe
3.5k • written 4 months ago by
Jonathan
▴ 10
0
votes
0
replies
205
views
Issue with lengthConnectors in EnhancedVolcano
EnhancedVolcano
5 months ago
ikotlar
• 0
0
votes
3
replies
328
views
Enhancedvolcano labels superimposed on points
EnhancedVolcano
updated 5 months ago by
Kevin Blighe
3.5k • written 5 months ago by
acharest
• 0
0
votes
0
replies
187
views
EnhancedVolcano, coloring of a subset of labels
EnhancedVolcano
6 months ago
bradyb
• 0
0
votes
2
replies
400
views
ERROR installing EnhancedVolcano in R4.1
EnhancedVolcano
updated 7 months ago by
Kevin Blighe
3.5k • written 7 months ago by
Raj
• 0
0
votes
5
replies
432
views
EnhancedVolcano plot - labels
EnhancedVolcano
updated 8 months ago by
Kevin Blighe
3.5k • written 8 months ago by
Johannes
• 0
5
votes
4
replies
802
views
ylim and xlim in Enhanced Volcano
DESeq2
EnhancedVolcano
Bioconductor
updated 9 months ago by
Kevin Blighe
3.5k • written 9 months ago by
Rachel
• 0
2
votes
6
replies
1.2k
views
How can I use geom_label_repel with EnhancedVolcano?
ggrepel
RNASeq
R
EnhancedVolcano
10 months ago
Loren
▴ 10
2
votes
1
reply
767
views
EnhancedVolcano Label Question
RNASeq
EnhancedVolcano
DEGs
updated 11 months ago by
Kevin Blighe
3.5k • written 11 months ago by
robledoj13
• 0
7
votes
8
replies
2.3k
views
Warning in EnhancedVolcano plot
volcano-plot
EnhancedVolcano
updated 12 months ago by
Kevin Blighe
3.5k • written 13 months ago by
Assa Yeroslaviz
★ 1.5k
1
vote
4
replies
696
views
EnhancedVolcano plot with colCustom
EnhancedVolcano
13 months ago
Neeraja Vegesna
▴ 10
1
vote
1
reply
554
views
Enhanced Volcano Plot Controlling Color Layers
EnhancedVolcano
13 months ago
dk0319
• 0
6
votes
9
replies
825
views
How to better design a Volcano plot
EnhancedVolcano
updated 16 months ago by
Kevin Blighe
3.5k • written 16 months ago by
suxxa
▴ 20
1
vote
8
replies
651
views
Problem selectively labelling points in the Enhanced Volcano package
EnhancedVolcano
17 months ago
Peter
▴ 10
6
votes
8
replies
1.2k
views
Jitter p-values in volcano plot
EnhancedVolcano
DESeq2
updated 18 months ago by
Michael Love
37k • written 18 months ago by
philipp.rewe
▴ 20
3
votes
2
replies
675
views
enhancedVolcano: Why are only a few of my select labels showing up?
enha
EnhancedVolcano
19 months ago • updated 18 months ago
noahhelton98
▴ 10
3
votes
5
replies
558
views
Volcano plot - select additional gene
EnhancedVolcano
RNASeqR
R
volcanoplot
updated 19 months ago by
Kevin Blighe
3.5k • written 19 months ago by
camillab.
▴ 10
1
vote
12
replies
718
views
EnhancedVolcano - highlight specific points by changing shape
enhancedvolcano
updated 20 months ago by
Kevin Blighe
3.5k • written 20 months ago by
n.tear
▴ 20
0
votes
20
replies
1.4k
views
pointSize, labSize, and DrawConnectors error when plotting EnhancedVolcano
EnhancedVolcano
21 months ago • updated 17 months ago
knholm
• 0
0
votes
1
reply
335
views
Increase text size of axis labels in EnhancedVolcano
EnhancedVolcano
updated 21 months ago by
Kevin Blighe
3.5k • written 21 months ago by
knholm
• 0
4
votes
7
replies
719
views
visualize significant upregultaed genes and downregultaed genes with different colors (EnhancedVolcano)
enhancedvolcano
updated 21 months ago by
Kevin Blighe
3.5k • written 21 months ago by
gaom001
▴ 10
0
votes
3
replies
275
views
Enhanced volcanoplots from DESeq2
EnhancedVolcano
updated 2.2 years ago by
Michael Love
37k • written 2.2 years ago by
rimss.khurana
• 0
1
vote
6
replies
11k
views
Log2FC data type error in EnhansedVolcano package
software error
enhancedvolcano
2.6 years ago
sauuyer
▴ 10
0
votes
8
replies
5.2k
views
How to generate a volcano plot when p-values from DESeq2 are zero?
deseq2
pvalue
visualization
enhancedvolcano
rnaseq
updated 3.3 years ago by
Michael Love
37k • written 3.3 years ago by
ricardo3889
• 0
27 results • Page
1 of 1
Recent ...
Replies
Comment: Italicise
by
Pau
• 0
They're the same: example of the vignette: "italic('VCAM1')" and result from my data: "italic('CARS1')" As I am running against time be…
Comment: Can Differential Isoform expression analysis can be performed using DESeq2 packa
by
priyanka.m
• 0
Thank you for the suggestions. I will try to compare my results and accordingly interpret the two.
Answer: [sva] Error in density.default(x, adjust = adj) : 'x' contains missing values
by
wahaha
• 0
I found the reason, because some gene expression levels are 0 in all samples. you can add these code to check the data: >exp_mean <- appl…
Answer: DESeq2 how to specify contrast to test difference of differences
by
Nicole
• 0
The comment from @mikelove about specifying numeric contrasts answered my question. This code is not standalone, but I will leave it here i…
Comment: DESeq2 how to specify contrast to test difference of differences
by
Nicole
• 0
Thank you, @mikelove - that did it! The results make sense now. From my original post, could you clarify what the `group1w.sexfemale` contr…
Votes
Answer: DESeq2 how to specify contrast to test difference of differences
Comment: DESeq2 how to specify contrast to test difference of differences
Answer: Confused about the design matrix in edgeR: How to tell R to consider one level a
Answer: biomaRt error unable to fix: need help troubleshooting
Answer: edgeR : results from goana and kegga functions show opposite sig. p-value
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