Bioconductor Filter

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RNASeq filter design edgeR model.matrix

19 days ago • updated 18 days ago mohammedtoufiq91 ▴ 10

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1.5k

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filter deseq2

updated 2.8 years ago by Michael Love 43k • written 2.8 years ago by PD • 0

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1.9k

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R filter limma Normalization Microarray

2.8 years ago Abdul ▴ 20

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955

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filter gate_quad_tmix gt_gating

3.9 years ago • updated 3.8 years ago Pierre • 0

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1.2k

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flowCore openCyto Summary Result Filter

updated 5.7 years ago by Jake Wagner ▴ 310 • written 5.9 years ago by noviello • 0

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2.1k

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RNA WGCNA filter

6.6 years ago modarzi ▴ 10

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1.3k

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filter deseq2

updated 6.9 years ago by Michael Love 43k • written 6.9 years ago by charles.foster ▴ 180

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1.6k

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rtracklayer gff filter

updated 7.0 years ago by Michael Lawrence ★ 11k • written 7.0 years ago by alslonik • 0

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2.4k

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deseq2 filter genefilter

updated 8.2 years ago by Michael Love 43k • written 8.3 years ago by Björn • 0

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4.7k

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loop filter

written 8.2 years ago by kritikamish99 ▴ 10

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4.3k

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DGElist filter edgeR

updated 8.6 years ago by Gordon Smyth 53k • written 8.6 years ago by alakatos ▴ 130

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1.7k

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limma filter genelist differential gene expression

updated 9.3 years ago by Gordon Smyth 53k • written 9.3 years ago by bi_Scholar • 0

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1.3k

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missing data filter

updated 10.2 years ago by James W. MacDonald 68k • written 10.2 years ago by rgescudero • 0

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1.8k

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flowcore gate subsetting filter

updated 10.4 years ago by Jiang, Mike ★ 1.3k • written 10.4 years ago by peterfoster ▴ 20

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3.3k

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probe filter subset gene symbol affy

10.9 years ago alakatos ▴ 130

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4.4k

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bioconductor mas5 perfectmatch affymetrixchip filter

updated 11.0 years ago by James W. MacDonald 68k • written 11.0 years ago by svlachavas ▴ 840

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3.7k

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deseq filter reads

11.1 years ago • updated 11.0 years ago ccheung • 0

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1.8k

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variantannotation vcf fixed filter

11.1 years ago Anna N. • 0

18 results • Page 1 of 1

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Comment: msmsTests, inconsistent sign between lFC.Av and LogFC by Ben • 0

Continued here due to posting difficulties: Extract from the results table: ``` Inhibitor Vehicle lFC.Av LogFC ... F1 0.0 27…

Answer: DESeq2 for 16S rRNA Analysis by James W. MacDonald 68k

The Wald test is only meant for comparison of two groups at a time, so it depends on what you mean by 'analyze across multiple groups at a …

Comment: MetaDE.pvalue: Error in xj[i]: invalid subscript type 'list' by varying.mastodon.isyn • 0

Oh, that error! I remember wrestling with that one for hours when I was first learning Python. Turns out I was trying to use a list itself …

Comment: Confirm that OpenStats will not be archived (pryr dependency) by Marina • 0

Thank you!

Comment: AnnotationForge makeOrgPackage rsqlite_send_query error by ansley.r.burtch • 0

Hi! I am sure you are well into your career now and haven't worked on this for a while, but I wanted to let you know this is still helping …

Votes

Answer: How to directly decet the outlier samples (libraries) in EdgeR pipeline

Answer: Confused about the CPM and TMM normalization in edgeR

A: DESeq2 - VST eliminates zero values

Comment: Normalise to a housekeeping gene in DESEq2

Comment: limpa analysis advice

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