Bioconductor Filter

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filter deseq2

updated 20 months ago by Michael Love 43k • written 21 months ago by PD • 0

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R filter limma Normalization Microarray

21 months ago Abdul ▴ 20

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filter gate_quad_tmix gt_gating

2.8 years ago • updated 2.7 years ago Pierre • 0

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flowCore openCyto Summary Result Filter

updated 4.7 years ago by Jake Wagner ▴ 310 • written 4.8 years ago by noviello • 0

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RNA WGCNA filter

5.5 years ago modarzi ▴ 10

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filter deseq2

updated 5.8 years ago by Michael Love 43k • written 5.8 years ago by charles.foster ▴ 160

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rtracklayer gff filter

updated 5.9 years ago by Michael Lawrence ★ 11k • written 5.9 years ago by alslonik • 0

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deseq2 filter genefilter

updated 7.2 years ago by Michael Love 43k • written 7.2 years ago by Björn • 0

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loop filter

written 7.2 years ago by kritikamish99 ▴ 10

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DGElist filter edgeR

updated 7.5 years ago by Gordon Smyth 52k • written 7.5 years ago by alakatos ▴ 130

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limma filter genelist differential gene expression

updated 8.2 years ago by Gordon Smyth 52k • written 8.2 years ago by bi_Scholar • 0

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missing data filter

updated 9.1 years ago by James W. MacDonald 67k • written 9.1 years ago by rgescudero • 0

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flowcore gate subsetting filter

updated 9.3 years ago by Jiang, Mike ★ 1.3k • written 9.3 years ago by peterfoster ▴ 20

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probe filter subset gene symbol affy

9.9 years ago alakatos ▴ 130

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bioconductor mas5 perfectmatch affymetrixchip filter

updated 9.9 years ago by James W. MacDonald 67k • written 9.9 years ago by svlachavas ▴ 840

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deseq filter reads

10.0 years ago ccheung • 0

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variantannotation vcf fixed filter

10.0 years ago Anna N. • 0

17 results • Page 1 of 1

Recent ...

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Answer: promoters_txdb <- promoters(txdb, upstream = 2000) is not 2000 by James W. MacDonald 67k

If you use `promoters` and do not provide an argument for something that has a default, you will get the default argument. Your last call t…

Comment: org.Hs.eg.db issue by k.panov • 0

installed R on another PC, works perfectly. ergo, problem outside of R probably..... :-(

Comment: MBDseq analysis using qsea package by Lukas ▴ 20

Hi, I checked in with Matthias and here is his response: You need to indicate "samples": "The indices of the samples for which individu…

Comment: DESeq2 analysis with transcript counts by sindhuri • 0

Thank you for the response. Currently I am using the R studio for analysis and Im running DESeq2 for analysis of the **transcript counts.ts…

Comment: iam not able to do retrive data using GEOquery R package by James W. MacDonald 67k

Another alternative is to use the `GEOmetadb` package ([vignette here)][1], which will allow you to make queries to identify GEO datasets t…

Votes

A: Linear regression in DESeq2

Answer: Is there any chance to solve "the model matrix is not full rank" in DESeq2?

Answer: Issue carrying out DiffBind Analysis at a predefined peak set

Answer: Differential variability modelling with vst() expression

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