Bioconductor Filter

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filter deseq2

updated 13 months ago by Michael Love 42k • written 14 months ago by PD • 0

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R filter limma Normalization Microarray

14 months ago Abdul ▴ 20

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filter gate_quad_tmix gt_gating

2.3 years ago • updated 2.1 years ago Pierre • 0

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flowCore openCyto Summary Result Filter

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filter deseq2

updated 5.3 years ago by Michael Love 42k • written 5.3 years ago by charles.foster ▴ 160

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rtracklayer gff filter

updated 5.4 years ago by Michael Lawrence ★ 11k • written 5.4 years ago by alslonik • 0

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deseq2 filter genefilter

updated 6.6 years ago by Michael Love 42k • written 6.6 years ago by Björn • 0

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loop filter

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limma filter genelist differential gene expression

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probe filter subset gene symbol affy

9.3 years ago alakatos ▴ 130

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bioconductor mas5 perfectmatch affymetrixchip filter

updated 9.3 years ago by James W. MacDonald 66k • written 9.3 years ago by svlachavas ▴ 830

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deseq filter reads

9.4 years ago ccheung • 0

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variantannotation vcf fixed filter

9.4 years ago Anna N. • 0

17 results • Page 1 of 1

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Comment: Most enriched pathway is not expressed when modifying universe parameter by adripel • 0

Well, I was looking at the result table (enrich18k@result, or yy@result in your example), and it gives every pathway even the non-significa…

Comment: Trouble reading samplesheet in with diffbind to create dba by Mallory • 0

Thank you for your reply! There mustve been something wierd going on with my peak formats as you pointed out. I recalled all the peaks and …

Answer: Trouble reading samplesheet in with diffbind to create dba by Anthony • 0

I was struggling with this today too. For me it happened because my peak files were not in the correct format. The "10 elements" refers to …

Comment: gds in GEOmetadb 2023-06-26 version is empty by Frederico Moraes Ferreira ▴ 100

Try axel -n 20 https://gbnci.cancer.gov/geo/GEOmetadb.sqlite.gz

Comment: Most enriched pathway is not expressed when modifying universe parameter by James W. MacDonald 66k

The default for `enrichGO` is to subset to those with a p-value<0.05. You don't adjust that default argument, so you shouldn't have any GO …

Votes

A: dream vignette says limma-voom repeated measures two-group comparison needs two

Answer: Get the latest gene name from Entrez ID

Get the latest gene name from Entrez ID

Answer: biomaRt not working - lazy table error

Answer: How to do DESeq2 on Kallisto Data

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