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Question about the filterByExpr function inputs in edgeR
RNASeq
filter
design
edgeR
model.matrix
19 days ago • updated 18 days ago
mohammedtoufiq91
▴ 10
0
votes
3
replies
1.5k
views
remving pseudogenes and lncRNA from deseq2 res
filter
deseq2
updated 2.8 years ago by
Michael Love
43k • written 2.8 years ago by
PD
• 0
1
vote
2
replies
1.9k
views
Filter by expression and keep probes in limma
R
filter
limma
Normalization
Microarray
2.8 years ago
Abdul
▴ 20
0
votes
1
reply
955
views
openCyto's gate_quad_tmix broken when reading from gating template (and a bit more)
filter
gate_quad_tmix
gt_gating
3.9 years ago • updated 3.8 years ago
Pierre
• 0
0
votes
1
reply
1.2k
views
FlowCore openCyto: problem with summary(result)
flowCore
openCyto
Summary
Result
Filter
updated 5.7 years ago by
Jake Wagner
▴ 310 • written 5.9 years ago by
noviello
• 0
1
vote
1
reply
2.1k
views
how to filter genes in significant module?
RNA
WGCNA
filter
6.6 years ago
modarzi
▴ 10
1
vote
1
reply
1.3k
views
Finding genes that are expressed only in one condition within a contrast
filter
deseq2
updated 6.9 years ago by
Michael Love
43k • written 6.9 years ago by
charles.foster
▴ 180
0
votes
1
reply
1.6k
views
How to filter gff based on certain gene list in rtracklayer?
rtracklayer
gff
filter
updated 7.0 years ago by
Michael Lawrence
★ 11k • written 7.0 years ago by
alslonik
• 0
0
votes
1
reply
2.4k
views
Error in checkFullRank(modelMatrix) : the model matrix is not full rank, ?
deseq2
filter
genefilter
updated 8.2 years ago by
Michael Love
43k • written 8.3 years ago by
Björn
• 0
1
vote
8
replies
4.7k
views
How to filter all column using Loop
loop
filter
written 8.2 years ago by
kritikamish99
▴ 10
2
votes
4
replies
4.3k
views
Filtering DGEList object in edgeR
DGElist
filter
edgeR
updated 8.6 years ago by
Gordon Smyth
53k • written 8.6 years ago by
alakatos
▴ 130
4
votes
2
replies
1.7k
views
limma; Only fit list of certain genes/ filter eSet
limma
filter
genelist
differential gene expression
updated 9.3 years ago by
Gordon Smyth
53k • written 9.3 years ago by
bi_Scholar
• 0
1
vote
1
reply
1.3k
views
filter rows by missing values frequency
missing data
filter
updated 10.2 years ago by
James W. MacDonald
68k • written 10.2 years ago by
rgescudero
• 0
0
votes
1
reply
1.8k
views
Inconsistent Subseting using norm2Filter in FlowCore
flowcore
gate
subsetting
filter
updated 10.4 years ago by
Jiang, Mike
★ 1.3k • written 10.4 years ago by
peterfoster
▴ 20
0
votes
3
replies
3.3k
views
filtering out probes with no gene symbol from expressionSet
probe
filter
subset
gene symbol
affy
10.9 years ago
alakatos
▴ 130
3
votes
11
replies
4.4k
views
Filtering on present/absent calls methodology and perfect match only arrays
bioconductor
mas5
perfectmatch
affymetrixchip
filter
updated 11.0 years ago by
James W. MacDonald
68k • written 11.0 years ago by
svlachavas
▴ 840
2
votes
2
replies
3.7k
views
DESeq: filter out low count reads
deseq
filter
reads
11.1 years ago • updated 11.0 years ago
ccheung
• 0
3
votes
2
replies
1.8k
views
VariantAnnotation package, subseting vcfs on fixed fields
variantannotation
vcf
fixed
filter
11.1 years ago
Anna N.
• 0
18 results • Page
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Comment: msmsTests, inconsistent sign between lFC.Av and LogFC
by
Ben
• 0
Continued here due to posting difficulties: Extract from the results table: ``` Inhibitor Vehicle lFC.Av LogFC ... F1 0.0 27…
Answer: DESeq2 for 16S rRNA Analysis
by
James W. MacDonald
68k
The Wald test is only meant for comparison of two groups at a time, so it depends on what you mean by 'analyze across multiple groups at a …
Comment: MetaDE.pvalue: Error in xj[i]: invalid subscript type 'list'
by
varying.mastodon.isyn
• 0
Oh, that error! I remember wrestling with that one for hours when I was first learning Python. Turns out I was trying to use a list itself …
Comment: Confirm that OpenStats will not be archived (pryr dependency)
by
Marina
• 0
Thank you!
Comment: AnnotationForge makeOrgPackage rsqlite_send_query error
by
ansley.r.burtch
• 0
Hi! I am sure you are well into your career now and haven't worked on this for a while, but I wanted to let you know this is still helping …
Votes
Answer: How to directly decet the outlier samples (libraries) in EdgeR pipeline
Answer: Confused about the CPM and TMM normalization in edgeR
A: DESeq2 - VST eliminates zero values
Comment: Normalise to a housekeeping gene in DESEq2
Comment: limpa analysis advice
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