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filter deseq2

updated 12 months ago by Michael Love 42k • written 12 months ago by PD • 0

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R filter limma Normalization Microarray

13 months ago Abdul ▴ 20

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filter gate_quad_tmix gt_gating

2.2 years ago • updated 2.0 years ago Pierre • 0

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flowCore openCyto Summary Result Filter

updated 4.0 years ago by Jake Wagner ▴ 310 • written 4.1 years ago by noviello • 0

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RNA WGCNA filter

4.9 years ago modarzi ▴ 10

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filter deseq2

updated 5.2 years ago by Michael Love 42k • written 5.2 years ago by charles.foster ▴ 160

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rtracklayer gff filter

updated 5.3 years ago by Michael Lawrence ★ 11k • written 5.3 years ago by alslonik • 0

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deseq2 filter genefilter

updated 6.5 years ago by Michael Love 42k • written 6.5 years ago by Björn • 0

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loop filter

written 6.5 years ago by kritikamish99 ▴ 10

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DGElist filter edgeR

updated 6.8 years ago by Gordon Smyth 50k • written 6.8 years ago by alakatos ▴ 130

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limma filter genelist differential gene expression

updated 7.6 years ago by Gordon Smyth 50k • written 7.6 years ago by bi_Scholar • 0

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missing data filter

updated 8.4 years ago by James W. MacDonald 65k • written 8.4 years ago by rgescudero • 0

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flowcore gate subsetting filter

updated 8.6 years ago by Jiang, Mike ★ 1.3k • written 8.6 years ago by peterfoster ▴ 20

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probe filter subset gene symbol affy

9.2 years ago alakatos ▴ 130

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bioconductor mas5 perfectmatch affymetrixchip filter

updated 9.2 years ago by James W. MacDonald 65k • written 9.2 years ago by svlachavas ▴ 830

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deseq filter reads

9.3 years ago ccheung • 0

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variantannotation vcf fixed filter

9.3 years ago Anna N. • 0

17 results • Page 1 of 1

Recent ...

Replies

Comment: How to use spike-in information (sequences from another species) with DESeq2::DE by maria.soler • 0

Hi, I have a question barely related to this topic. Do you use a custom reference genome combining your organism and the one used as a spik…

Answer: Differential gene expression analysis results by ATpoint ★ 4.1k

Pease do not open multiple posts for the same issue: https://support.bioconductor.org/p/9158194/#9158222 The support site is not meant f…

Comment: deseq2 results by sajadahmad41454 • 0

thank you for your response, should i remove or discard that sample? since the red outlier on left represents one of healthy samples.

Comment: deseq2 results by swbarnes2 ★ 1.4k

It looks like the PCA plot of a real RNASeq experiment. The red outlier on the left might be the mathematical reason why you have few vali…

Comment: Multi-factorial, longitudinal disease progression analysis with unbalanced patie by Dylan.Sheerin • 0

Thank you very much, Gordon. I'll give voomLmFit a go!

Votes

Comment: deseq2 results

Answer: Multi-factorial, longitudinal disease progression analysis with unbalanced patie

Answer: Extremely small p-values using Limma for proteomic data

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