Bioconductor Filter

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filter deseq2

updated 12 months ago by Michael Love 41k • written 12 months ago by PD • 0

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R filter limma Normalization Microarray

12 months ago Abdul ▴ 20

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filter gate_quad_tmix gt_gating

2.1 years ago • updated 24 months ago Pierre • 0

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loop filter

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flowCore openCyto Summary Result Filter

updated 4.0 years ago by Jake Wagner ▴ 310 • written 4.1 years ago by noviello • 0

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RNA WGCNA filter

4.8 years ago modarzi ▴ 10

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filter deseq2

updated 5.1 years ago by Michael Love 41k • written 5.1 years ago by charles.foster ▴ 160

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rtracklayer gff filter

updated 5.2 years ago by Michael Lawrence ★ 11k • written 5.2 years ago by alslonik • 0

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deseq2 filter genefilter

updated 6.4 years ago by Michael Love 41k • written 6.5 years ago by Björn • 0

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DGElist filter edgeR

updated 6.8 years ago by Gordon Smyth 50k • written 6.8 years ago by alakatos ▴ 130

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limma filter genelist differential gene expression

updated 7.5 years ago by Gordon Smyth 50k • written 7.5 years ago by bi_Scholar • 0

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missing data filter

updated 8.4 years ago by James W. MacDonald 65k • written 8.4 years ago by rgescudero • 0

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flowcore gate subsetting filter

updated 8.6 years ago by Jiang, Mike ★ 1.3k • written 8.6 years ago by peterfoster ▴ 20

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probe filter subset gene symbol affy

9.1 years ago alakatos ▴ 130

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bioconductor mas5 perfectmatch affymetrixchip filter

updated 9.2 years ago by James W. MacDonald 65k • written 9.2 years ago by svlachavas ▴ 830

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deseq filter reads

9.3 years ago ccheung • 0

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variantannotation vcf fixed filter

9.3 years ago Anna N. • 0

17 results • Page 1 of 1

Recent ...

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Answer: Dominance Index for Shotgun Metagenomics Data by Leo Lahti ▴ 40

1. Note that Simpson's dominance index (\lambda) is a different index than inverse Simpson (1/\lambda) or reciprocal Simpson (1-\lambda). T…

Comment: Math expression in shapeCustom legend in EnhancedVolcano by pl23 • 0

Thank you very much - that worked perfectly! Word of warning to those who try this: it screws up the other legends because of the markdown …

Answer: PCA plot suggestions by Michael Love 41k

For help with interpretation and design of analysis, I recommend working with a local statistician. Due to time restrictions, I can only…

Comment: DESeq2 Error in `.rowNamesDF<-`(x, value = value): Invalid 'row.names' length by ussarizona ▴ 10

Hi Michael, Yes, I could figure it out what does the error mean. In my matrix I had the first colum GeneID while in my condition I only h…

Answer: Deseq2. decontXcounts not integers. Useful alternative? by Michael Love 41k

Another option would be to put the per sample estimated contamination in the design. This is for example how RUV etc help remove spurious D…

Votes

Answer: Dominance Index for Shotgun Metagenomics Data

Answer: Math expression in shapeCustom legend in EnhancedVolcano

Comment: DESeq2 Error in `.rowNamesDF<-`(x, value = value): Invalid 'row.names' length

Comment: Deseq2. decontXcounts not integers. Useful alternative?

Comment: Opposite sign of LFC in count plots of DEGs (DESeq2)

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