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2.6 years ago • updated 2.5 years ago
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Comment: DEseq2 coefficient
by
JKim
•
0
Hi Dr. Love,
I'm sorry to ask another question to my old post.
If the design isn't balanced, the interpretation of coefficients will be…
Comment: Store output of matchPWM()
by
mat149
▴
70
out <- do.call(c, lapply(hitlist, function(x) as(x, "IRanges")))
Error in do.call(c, lapply(hitlist, function(x) as(x, "IRanges"))) :
'…
Answer: Store output of matchPWM()
by
James W. MacDonald
65k
Something like this?
```
ind <- as.logical(sapply(hitlist, length))
out <- do.call(c, lapply(hitlist, function(x) as(x, "IRanges")))
…
Answer: log2FoldChange value is way too different when compared with counts(dds)
by
Michael Love
41k
This has been asked before, but with a multi factor design, the LFC for coefficient X adjust for the others, in a way that is often hard to…
Answer: Get genomic coordinates of CpGs sites (chromosomes, genomic position)
by
James W. MacDonald
65k
You don't say what array that is, so I will guess.
```
> library(IlluminaHumanMethylationEPICanno.ilm10b4.hg19)
> Locations
DataFrame…
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