Showing : Heatmaps • reset
2
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5
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1.6k
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ComplexHeatmap - z-score color coding failed
heatmaps ComplexHeatmap
17 months ago Katharina • 0
4
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5
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1.4k
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DEseq2 results
heatmaps DEGs PCA
updated 3.2 years ago by ★ 3.9k • written 3.2 years ago by • 0
2
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5
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3.4k
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How to identify top most variable genes from log2 normalized data?
supervised edgeR variance RNASeq heatmaps
updated 15 months ago by 50k • written 17 months ago by ▴ 10
0
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3
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1.2k
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Generate Heatmap from Gene Names after DESEQ2
DESeq2 DESEQ2 tximeta SummarizedExperiment heatmaps
updated 20 months ago by 66k • written 20 months ago by • 0
2
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How can I draw a barplot of complexheatmap according 'Tumor Type'
heatma heatmaps ComplexHeatmap
updated 16 months ago by ▴ 40 • written 16 months ago by ▴ 10
0
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3
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1.3k
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Persisting error in making a heatmap
heatmaps gplots
23 months ago beslinail • 0
0
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3
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612
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Installing Gpart
gpart heat heatmaps
updated 7 months ago by 66k • written 7 months ago by • 0
0
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2
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913
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How to use the plotExprHeatmap function to draw heat maps according to groups
grou heatmaps CyTOFpower cytofWorkflow
15 months ago • updated 14 months ago shuangshuang • 0
0
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2
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672
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Drawing a heatmap with only limited genes
heatmaps
updated 11 months ago by • 0 • written 11 months ago by • 0
0
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2
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85
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Cluster columns in Pheatmap
geneexp pheatmap heatmaps cluster
updated 3 days ago by 66k • written 3 days ago by • 0
0
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2
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1.7k
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PCA and heatmaps: most variable genes selection
DESeq2 ExpressionData heatmaps pca
2.9 years ago Clara ▴ 10
2
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2
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639
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[DESeq2] There is no difference in expression in my heatmap
DESeq2 heatmaps
16 months ago Sooni ▴ 10
0
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2
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4.0k
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Scaling for p.heatmap
heatmaps pheatmap scaling
23 months ago Bhavana • 0
0
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1
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793
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Error when trying to create a heatmap with DESeq2
Heatmap RNA-seqanalysis heatmaps DESeq2
updated 7 months ago by ▴ 780 • written 7 months ago by • 0
0
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1
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948
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edgeR heatmap construction and interpretation
heatmaps
updated 7 months ago by 50k • written 7 months ago by • 0
1
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1
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870
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PCA rand heatmap of raw data
DESeq2 DiffSeq PrincipalComponent rlog heatmaps
updated 3.2 years ago by 42k • written 3.2 years ago by ▴ 30
0
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1
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2.5k
views
Can you colour dendrogram branch clusters in pheatmap?
R heatmaps pheatmap
updated 3.2 years ago by ★ 3.9k • written 3.2 years ago by ▴ 10
1
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1
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791
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Method for generating heatmap of overlapping DEGs?
heatm heatmaps
updated 2.1 years ago by 66k • written 2.1 years ago by • 0
0
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1
reply
1.1k
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Help me do a gene enrichment analysis
DESeq2 topGO heatmaps
updated 2.7 years ago by ▴ 40 • written 2.7 years ago by • 0
0
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1
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654
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struggling to create a heatmap
DESeq2 heatmaps
updated 15 months ago by ★ 4.2k • written 15 months ago by ▴ 10
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1
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1.5k
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Complex Heatmap - correlation matrix - how to have exact same annotation with same colors for rows and columns?
R heatmaps ComplexHeatmap Heatma
updated 21 months ago by ▴ 260 • written 21 months ago by • 0
0
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1
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655
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Heatmap of two conditions from the normalized gene count data
GeneExpression heatmaps
updated 14 months ago by ★ 4.2k • written 15 months ago by • 0
0
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1
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2.2k
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Heatmap with result DESeq analysis
DESeq2 results Heatmaps plots
updated 19 months ago by 42k • written 19 months ago by • 0
1
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1
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523
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Add 'ColSideColors' using 'heatmap.2' function
ColSideColors heatmaps heatmap.2
updated 13 months ago by ▴ 80 • written 14 months ago by ▴ 10
1
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1
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1.0k
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How fix lines of dendrogram that overlap in the column portion of a heatmap?
heat heatmaps
updated 23 months ago by 66k • written 23 months ago by • 0
0
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0
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864
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WGCNA Heatmap and Export to Cytoscape Not Working
Cytoscape Heatmap heatmaps WGCNA
15 months ago gianni.drm • 0
0
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0
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729
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How to generate input file for Bioconductor package heatmaps
heatmaps input file
updated 5.2 years ago by 66k • written 5.2 years ago by ▴ 10
27 results • Page 1 of 1
Recent ...
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Comment: Why is longestConsecutive() depreceated in version 2.72 (BioC version 3.19)? by ATpoint ★ 4.2k
I don't have an answer to the "why" but maybe a simple reimplemention will do: ```r seqs <- c("ATCATCGTATCAAAGTC", "AAAACGTATCAAAGTC", "TG…
Comment: How to add Ensembl ids after Pseudobulk analysis by DESeq2 by Guido Hooiveld ★ 4.0k
After checking `?DESeqDataSetFromMatrix` note this information: arguments provided to SummarizedExperiment including rowRanges and met…
Answer: Error in gseDO function by Guido Hooiveld ★ 4.0k
Yes, you are missing something. :-) For a GSEA you will need to use as input all genes that you are analyzing; these genes should be ran…
Comment: GSVA function by Robert Castelo ★ 3.3k
No, negative values may occur after log transformation when the `log(x)` is taken from a positive number `x with 0 < x < 1`, and therefore …
Comment: conumee with Infinium MethylationEPIC v2.0 by sgomez • 0
Hi Max, Could you try this? https://support.bioconductor.org/p/9136138/#9136840
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A: Comparison between two different group's pathway analysis results
DiffBind Batch Effect
A: DiffBind Batch Effect
A: DiffBind Batch Effect
C: DiffBind Batch Effect
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