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Heatmaps
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0
votes
2
replies
4.0k
views
Scaling for p.heatmap
heatmaps
pheatmap
scaling
23 months ago
Bhavana
• 0
2
votes
5
replies
3.4k
views
How to identify top most variable genes from log2 normalized data?
supervised
edgeR
variance
RNASeq
heatmaps
updated 15 months ago by
Gordon Smyth
50k • written 17 months ago by
mohammedtoufiq91
▴ 10
0
votes
1
reply
2.5k
views
Can you colour dendrogram branch clusters in pheatmap?
R
heatmaps
pheatmap
updated 3.2 years ago by
Kevin Blighe
★ 3.9k • written 3.2 years ago by
trichorico
▴ 10
0
votes
1
reply
2.2k
views
Heatmap with result DESeq analysis
DESeq2
results
Heatmaps
plots
updated 19 months ago by
Michael Love
42k • written 19 months ago by
Chiara
• 0
0
votes
2
replies
1.7k
views
PCA and heatmaps: most variable genes selection
DESeq2
ExpressionData
heatmaps
pca
3.0 years ago
Clara
▴ 10
2
votes
5
replies
1.6k
views
ComplexHeatmap - z-score color coding failed
heatmaps
ComplexHeatmap
17 months ago
Katharina
• 0
0
votes
1
reply
1.5k
views
Complex Heatmap - correlation matrix - how to have exact same annotation with same colors for rows and columns?
R
heatmaps
ComplexHeatmap
Heatma
updated 21 months ago by
Zuguang Gu
▴ 260 • written 21 months ago by
תום
• 0
4
votes
5
replies
1.4k
views
DEseq2 results
heatmaps
DEGs
PCA
updated 3.2 years ago by
Kevin Blighe
★ 3.9k • written 3.2 years ago by
MOHAMMAD
• 0
0
votes
3
replies
1.3k
views
Persisting error in making a heatmap
heatmaps
gplots
23 months ago
beslinail
• 0
0
votes
3
replies
1.2k
views
Generate Heatmap from Gene Names after DESEQ2
DESeq2
DESEQ2
tximeta
SummarizedExperiment
heatmaps
updated 20 months ago by
James W. MacDonald
66k • written 20 months ago by
uhlkatie
• 0
0
votes
1
reply
1.1k
views
Help me do a gene enrichment analysis
DESeq2
topGO
heatmaps
updated 2.7 years ago by
Guandong Shang
▴ 40 • written 2.7 years ago by
anasjamshed1994
• 0
2
votes
3
replies
1.0k
views
How can I draw a barplot of complexheatmap according 'Tumor Type'
heatma
heatmaps
ComplexHeatmap
updated 16 months ago by
elefth.pavlos
▴ 40 • written 16 months ago by
Sooni
▴ 10
1
vote
1
reply
1.0k
views
How fix lines of dendrogram that overlap in the column portion of a heatmap?
heat
heatmaps
updated 23 months ago by
James W. MacDonald
66k • written 23 months ago by
MauriAndres
• 0
0
votes
1
reply
949
views
edgeR heatmap construction and interpretation
heatmaps
updated 7 months ago by
Gordon Smyth
50k • written 7 months ago by
ulin.1
• 0
0
votes
2
replies
915
views
How to use the plotExprHeatmap function to draw heat maps according to groups
grou
heatmaps
CyTOFpower
cytofWorkflow
15 months ago
shuangshuang
• 0
1
vote
1
reply
871
views
PCA rand heatmap of raw data
DESeq2
DiffSeq
PrincipalComponent
rlog
heatmaps
updated 3.2 years ago by
Michael Love
42k • written 3.2 years ago by
Fischer-philipp
▴ 30
0
votes
0
replies
866
views
WGCNA Heatmap and Export to Cytoscape Not Working
Cytoscape
Heatmap
heatmaps
WGCNA
15 months ago
gianni.drm
• 0
0
votes
1
reply
796
views
Error when trying to create a heatmap with DESeq2
Heatmap
RNA-seqanalysis
heatmaps
DESeq2
updated 7 months ago by
Basti
▴ 780 • written 7 months ago by
langziv
• 0
1
vote
1
reply
792
views
Method for generating heatmap of overlapping DEGs?
heatm
heatmaps
updated 2.1 years ago by
James W. MacDonald
66k • written 2.1 years ago by
axe880
• 0
0
votes
0
replies
730
views
How to generate input file for Bioconductor package heatmaps
heatmaps
input file
updated 5.2 years ago by
James W. MacDonald
66k • written 5.2 years ago by
bony.dekumar
▴ 10
0
votes
2
replies
675
views
Drawing a heatmap with only limited genes
heatmaps
updated 11 months ago by
sayite3688
• 0 • written 11 months ago by
dania.khalid
• 0
0
votes
1
reply
655
views
Heatmap of two conditions from the normalized gene count data
GeneExpression
heatmaps
updated 14 months ago by
ATpoint
★ 4.2k • written 15 months ago by
Amazing570
• 0
0
votes
1
reply
654
views
struggling to create a heatmap
DESeq2
heatmaps
updated 15 months ago by
ATpoint
★ 4.2k • written 15 months ago by
m-bihie
▴ 10
2
votes
2
replies
643
views
[DESeq2] There is no difference in expression in my heatmap
DESeq2
heatmaps
16 months ago
Sooni
▴ 10
0
votes
3
replies
612
views
Installing Gpart
gpart
heat
heatmaps
updated 7 months ago by
James W. MacDonald
66k • written 7 months ago by
Benjamin
• 0
1
vote
1
reply
523
views
Add 'ColSideColors' using 'heatmap.2' function
ColSideColors
heatmaps
heatmap.2
updated 13 months ago by
Konstantinos Yeles
▴ 80 • written 14 months ago by
Sooni
▴ 10
0
votes
2
replies
93
views
Cluster columns in Pheatmap
geneexp
pheatmap
heatmaps
cluster
updated 4 days ago by
James W. MacDonald
66k • written 4 days ago by
pehove2385
• 0
27 results • Page
1 of 1
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Replies
Comment: Cannot install oligo on Fedora
by
Guido Hooiveld
★ 4.0k
Thanks for all suggestions and getting to the bottom of this! Unfortunately, fixing C code goes way above my skill level, so I cannot contr…
Comment: Cannot install oligo on Fedora
by
James W. MacDonald
66k
I think the solution is for the C code in `oligo` to be updated to work with more modern versions of `zlib`. The `zlibbioc` package is real…
Comment: Error in gseDO function
by
Guido Hooiveld
★ 4.0k
I don't fully understand what you are asking... Yet, in my opinion it doesn't make sense to use the results of only 12 genes for ORA (nor G…
Comment: Counter-directional LFC shrinkage
by
ATpoint
★ 4.2k
Is this RNA-seq? The unshrunken MA-plot looks very odd and indicates that normalization is completely offset.
Answer: ChAMP not available for bioconductor 3.19
by
shepherl
3.9k
See https://support.bioconductor.org/p/9158324/#9158336 . We have reached out to goseq to fix the package; we have a community member …
Votes
A: DESeq2: add annotations (from data frame) to DESeqDataSet
Answer: Error in gseDO function
Comment: what the test method for enrichGO in clusterProfiler?
A: Comparison between two different group's pathway analysis results
DiffBind Batch Effect
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