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Showing :
IRanges
•
reset
0
votes
6
replies
1.6k
views
Merging RandData object with names on the IRanges part
IRanges
IRanges
14.7 years ago
Ulrike Goebel
▴ 110
5
votes
8
replies
8.8k
views
Non overlapping granges (or opposite of subsetByOverlaps)
granges
genomicranges
iranges
subsetByOverlaps
updated 2.2 years ago by
b.simpson
• 0 • written 8.6 years ago by
vinod.acear
▴ 50
3
votes
5
replies
1.3k
views
Problem with svn_time() function on IRanges package - trying to run "exomePeak" package
iranges
8.6 years ago
m.ghanatbari
• 0
0
votes
8
replies
1.2k
views
stranded findOverlaps
IRanges
IRanges
updated 14.3 years ago by
Julien Gagneur
▴ 50 • written 14.3 years ago by
Robert Castelo
★ 3.3k
5
votes
8
replies
2.3k
views
closest-features equivalent in Bioconductor for finding closest gene(s)
genomicranges
granges
iranges
annotatepeak
updated 8.0 years ago by
Michael Lawrence
★ 11k • written 8.0 years ago by
Dimitris Polychronopoulos
▴ 80
0
votes
6
replies
6.3k
views
GRanges: problem with multiple seqnames and seqlengths
GRanges
seqnames
seqlengths
IRanges
9.6 years ago
topher.hamm
• 0
0
votes
16
replies
4.1k
views
subset a RleList using GRanges object?
Coverage
Cancer
IRanges
Coverage
Cancer
IRanges
updated 10.4 years ago by
Hervé Pagès
16k • written 10.4 years ago by
Janet Young
▴ 740
2
votes
10
replies
3.5k
views
Extract three types of intergenic regions
granges
views
annotation
iranges
updated 8.5 years ago by
Thomas Girke
★ 1.7k • written 8.5 years ago by
vinod.acear
▴ 50
0
votes
4
replies
1.8k
views
Getting first or last hit from a Hits object
IRanges
GenomicRanges
IRanges
GenomicRanges
updated 10.5 years ago by
Michael Lawrence
★ 11k • written 10.5 years ago by
Peter Hickey
▴ 740
0
votes
11
replies
2.3k
views
NucleR: processReads/solveUserSEW0 - Error
IRanges
ShortRead
nucleR
IRanges
ShortRead
nucleR
12.5 years ago
Stefanie Ververs
▴ 70
0
votes
5
replies
1.6k
views
HiTC importC not working
HiTC
IRanges
windows
debian
updated 6.2 years ago by
Nicolas Servant
▴ 260 • written 6.2 years ago by
René Wiegandt
• 0
0
votes
8
replies
1.7k
views
IRanges problem: findOverlaps
IRanges
IRanges
updated 11.8 years ago by
Julien Gagneur
▴ 50 • written 11.8 years ago by
Nicolas DESCOSTES
▴ 20
0
votes
3
replies
1.2k
views
View of subsequences corresponding granges on +ve strand and rev. complementary of seq on -ve strand.
Views
granges
grangeslist
iranges
updated 8.6 years ago by
Hervé Pagès
16k • written 8.6 years ago by
vinod.acear
▴ 50
0
votes
15
replies
2.0k
views
Looking for the source for IRanges 2.8.1, S4Vectors 0.12.1 and XVector 0.14.0
bioconductor
iranges
s4vectors
xvector
r 3.3.2
updated 5.8 years ago by
becker.gabriel
▴ 10 • written 5.8 years ago by
chokoiboko
• 0
2
votes
4
replies
4.3k
views
Help with sliding window analysis on GRanges object
IRanges
IRanges
10.2 years ago
Stefano Iantorno
▴ 30
0
votes
4
replies
1.3k
views
error in function reduce from girafe
Annotation
annotate
biomaRt
IRanges
girafe
Annotation
annotate
biomaRt
IRanges
girafe
updated 13.9 years ago by
Joern Toedling
▴ 450 • written 13.9 years ago by
Andreia Fonseca
▴ 810
2
votes
5
replies
4.9k
views
unlist doesn't work for IRanges
iranges
updated 6.0 years ago by
James W. MacDonald
65k • written 6.0 years ago by
li lilingdu
▴ 450
1
vote
4
replies
2.5k
views
biocLite updating problem with Ubuntu 17.10
ubuntu
biocgenerics
s4vectors
IRanges
annotationdbi
updated 6.4 years ago by
Martin Morgan
25k • written 6.4 years ago by
KRA
• 0
4
votes
2
replies
1.1k
views
Speed efficient way to select the n-th element from GRangsList
R
GenomicRanges
IRanges
5.4 years ago
foehn
▴ 100
6
votes
6
replies
1.5k
views
Implementing fast mathematical and statistical operations on genomic variables in bioconductor
genomicranges
biocgenerics
rlelist
genomicvars
iranges
updated 6.6 years ago by
Hervé Pagès
16k • written 6.6 years ago by
Devin King
▴ 20
6
votes
3
replies
2.4k
views
how does coverage() works
biostrings
coverage
rle
iranges
7.9 years ago
likeeatingpizza
▴ 10
0
votes
3
replies
1.5k
views
Using IRanges to find gene TSS that overlap a window
iranges
R
granges
updated 6.7 years ago by
Haibo.Liu
• 0 • written 6.7 years ago by
ssabri
▴ 20
7
votes
4
replies
2.1k
views
BiocGenerics built with R 3.4.2 changes behaviour
biocgenerics
iranges
variantannotation
updated 6.6 years ago by
Hervé Pagès
16k • written 6.6 years ago by
ginggs
▴ 40
5
votes
2
replies
1.3k
views
Using GRanges and IRanges to simply get all chromosome data
GRanges
IRanges
updated 7.7 years ago by
Martin Morgan
25k • written 7.7 years ago by
Kyle Johnsen
▴ 30
0
votes
2
replies
886
views
Adding names to a IRanges object
Cancer
IRanges
Cancer
IRanges
updated 15.3 years ago by
Michael Lawrence
▴ 620 • written 15.3 years ago by
Daniel Brewer
★ 1.9k
4
votes
17
replies
3.2k
views
How to construct a valid GRanges object from RCPP and pass back to R
GRanges
IRanges
RCPP
Constructor
updated 6.5 years ago by
fedor.bezrukov
▴ 10 • written 6.6 years ago by
hauken_heyken
▴ 80
0
votes
8
replies
2.0k
views
IRanges/List oddity: do.call of `c` on a list of IRangesList returns "list" only when the list is named
Cancer
IRanges
BiocGenerics
Cancer
IRanges
BiocGenerics
updated 11.4 years ago by
Michael Lawrence
★ 11k • written 11.4 years ago by
Hervé Pagès
16k
0
votes
5
replies
1.2k
views
IRanges causes bug in complete.cases
Regression
IRanges
Regression
IRanges
updated 14.4 years ago by
Michael Lawrence
★ 11k • written 14.4 years ago by
Kasper Daniel Hansen
★ 6.5k
1
vote
3
replies
1.1k
views
Error trying to run "seqlm" example
seqlm
IRanges
R
namespace
dmr analysis
7.8 years ago
calen.p.ryan
• 0
8
votes
12
replies
5.5k
views
Intergenic coordinates with Genomic Feaures
genomicranges
genomicfeatures
iranges
updated 21 months ago by
mehdi
• 0 • written 9.1 years ago by
cookie
▴ 20
0
votes
3
replies
1.2k
views
seqselect function in IRanges not working
IRanges
IRanges
updated 14.0 years ago by
James W. MacDonald
65k • written 14.0 years ago by
Fahim Md
▴ 250
3
votes
4
replies
1.7k
views
Introns at transcript expression level
genomicfeatures
iranges
updated 9.1 years ago by
Hervé Pagès
16k • written 9.1 years ago by
cookie
▴ 20
2
votes
5
replies
1.5k
views
making a RleViewsList object gets slow with many chromosomes
views
iranges
rle
9.2 years ago
Janet Young
▴ 740
0
votes
2
replies
2.3k
views
Coverage vs GC bias - how to?
Coverage
BSgenome
BSgenome
IRanges
Coverage
BSgenome
BSgenome
IRanges
updated 13.6 years ago by
Harris A. Jaffee
▴ 590 • written 13.7 years ago by
Marc Noguera
▴ 100
0
votes
6
replies
1.3k
views
iranges
IRanges
IRanges
updated 9.7 years ago by
Valerie Obenchain
★ 6.8k • written 9.7 years ago by
carol white
▴ 680
1
vote
2
replies
1.1k
views
IRanges vignette code comment
iranges
updated 22 months ago by
Kristopher Villa
• 0 • written 9.2 years ago by
Michael Love
41k
0
votes
2
replies
6.4k
views
how to obtain base counts from BAM file at specific genomic coordinates
SNP
Sequencing
Coverage
Alignment
Cancer
Biostrings
PROcess
IRanges
GenomicRanges
SNP
updated 10.5 years ago by
Michael Lawrence
★ 11k • written 10.5 years ago by
Hervé Pagès
16k
1
vote
5
replies
1.9k
views
'version' is missing error when running makeTxDbPackageFromUCSC
Cancer
TranscriptDb
IRanges
GenomicFeatures
Cancer
TranscriptDb
IRanges
GenomicFeatures
updated 8.5 years ago by
dave
▴ 10 • written 10.7 years ago by
Hervé Pagès
16k
0
votes
4
replies
1.7k
views
help with flank()
IRanges
IRanges
updated 13.6 years ago by
Vincent J. Carey, Jr.
6.7k • written 13.6 years ago by
joseph
▴ 330
1
vote
3
replies
2.2k
views
views on Rle using GRanges object
RNASeq
Coverage
GO
Cancer
bridge
rtracklayer
IRanges
RNASeq
Coverage
GO
Cancer
bridge
updated 10.1 years ago by
Hervé Pagès
16k • written 10.1 years ago by
Michael Lawrence
★ 11k
4
votes
3
replies
2.1k
views
Overlap the snps
overlap
snps
granges
iranges
updated 9.6 years ago by
Michael Lawrence
★ 11k • written 9.6 years ago by
anastasiya-terskih
▴ 10
0
votes
2
replies
1.2k
views
Fwd: BioStrings PairwiseAlignment deletion() insertion() function
Alignment
Cancer
Biostrings
IRanges
Alignment
Cancer
Biostrings
IRanges
updated 10.6 years ago by
Marcin Imielinski
▴ 30 • written 10.6 years ago by
Hervé Pagès
16k
0
votes
8
replies
1.8k
views
CIGAR-aware coverage
Coverage
IRanges
Coverage
IRanges
updated 10.2 years ago by
Michael Lawrence
★ 11k • written 10.2 years ago by
chris warth
▴ 30
0
votes
8
replies
2.0k
views
good news and bad news
Infrastructure
Cancer
IRanges
GenomicRanges
Infrastructure
Cancer
IRanges
GenomicRanges
updated 11.7 years ago by
Steve Lianoglou
★ 13k • written 11.7 years ago by
Hervé Pagès
16k
0
votes
16
replies
1.6k
views
IRanges is broken in Cygwin (mingw/math.h)
IRanges
IRanges
updated 10.8 years ago by
Michael Lawrence
★ 11k • written 10.8 years ago by
enricoferrero
▴ 660
0
votes
2
replies
1.5k
views
one problem about IRanges Package
simpleaffy
IRanges
simpleaffy
IRanges
updated 13.5 years ago by
Vincent J. Carey, Jr.
6.7k • written 13.5 years ago by
cao zongfu
▴ 50
0
votes
2
replies
1.0k
views
*Ranges paper published
Infrastructure
IRanges
GenomicFeatures
GenomicRanges
Infrastructure
IRanges
GenomicFeatures
updated 10.7 years ago by
Tim Triche
★ 4.2k • written 10.7 years ago by
Michael Lawrence
★ 11k
0
votes
2
replies
857
views
annotating reads acording with position on mapping
Annotation
annotate
biomaRt
IRanges
Annotation
annotate
biomaRt
IRanges
updated 14.0 years ago by
Joern Toedling
▴ 450 • written 14.0 years ago by
Andreia Fonseca
▴ 810
0
votes
4
replies
928
views
findOveraps suggestions
Cancer
IRanges
Cancer
IRanges
updated 14.3 years ago by
Michael Lawrence
★ 11k • written 14.3 years ago by
Janet Young
▴ 740
0
votes
3
replies
1.0k
views
IRanges: find containment and not just overlap
IRanges
IRanges
updated 15.2 years ago by
Michael Lawrence
▴ 620 • written 15.2 years ago by
Elizabeth Purdom
▴ 210
50 results • Page
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