Showing : Minfi • reset
0
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4
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2.8k
views
Error in loading GenomicMethylSet: "no slot of name 'elementMetadata' for this object of class 'GenomicMethylSet'"?
minfi
updated 9.9 years ago by ★ 6.5k • written 9.9 years ago by ▴ 10
0
votes
0
replies
1.5k
views
read.450k error in minfi
minfi
9.9 years ago Methyl ▴ 50
0
votes
0
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1.4k
views
estimateCellCounts - Error in combine(pDataX, pDataY) in minfi
minfi FlowSorted.Blood.450k
9.9 years ago Methyl ▴ 50
0
votes
2
replies
1.7k
views
Minfi error with new R and bioconductor update
minfi
updated 9.9 years ago by ▴ 50 • written 9.9 years ago by • 0
0
votes
3
replies
2.3k
views
Minfi "mapToGenome" error when attempting to generate a genomicRatioSet
Cancer convert minfi Cancer convert minfi
updated 9.9 years ago by • 0 • written 11.6 years ago by ★ 6.5k
1
vote
7
replies
4.5k
views
Loading beta values into minfi
minfi 450k
updated 9.9 years ago by ★ 6.5k • written 9.9 years ago by ▴ 10
0
votes
4
replies
2.2k
views
Setting seed in preprocessSWAN and random probe selection within and between arrays
minfi
updated 9.9 years ago by 68k • written 9.9 years ago by ▴ 10
1
vote
0
replies
1.6k
views
How to find DMRs using probe-lasso from ChAMP using minfi data
ChAMP minfi DMR dmr analysis lasso
10.0 years ago AST ▴ 60
0
votes
3
replies
2.4k
views
how to do a paired analysis with minfi?
limma minfi limma minfi
updated 10.1 years ago by 68k • written 12.2 years ago by ▴ 90
0
votes
0
replies
1.6k
views
minfi v1.14 through champ: read.450k error with file path name
minfi champ illumina 450k
10.1 years ago jeroen • 0
2
votes
7
replies
3.0k
views
preprocessNoob + preprocessQuantile Error handling preprocessMethod
minfi
updated 10.1 years ago by ★ 6.5k • written 10.1 years ago by ▴ 370
1
vote
3
replies
2.5k
views
minfi - estimatecellcount function
minfi illuminahumanmethylation450kanno.ilmn12.hg19 illuminahumanmethylation450k.db
updated 10.1 years ago by ★ 6.5k • written 10.1 years ago by ▴ 60
0
votes
0
replies
1.8k
views
Interepretation of dmpFinder result in minfi
microarray illuminahumanmethylation450k.db minfi
10.1 years ago ankita.chatterjee88 • 0
10
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3
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3.2k
views
minfi - estimateCellCount
minfi
10.2 years ago Methyl ▴ 50
3
votes
6
replies
2.7k
views
Complex Model Design with Bumphunter (Minfi)
minfi bumphunter model.matrix linear model
updated 2.5 years ago by • 0 • written 10.2 years ago by ▴ 370
1
vote
2
replies
2.3k
views
QC/normalization standards for cancer studies with 450k array data
minfi watermelon cancer 450k normalization
updated 10.2 years ago by ★ 6.5k • written 10.2 years ago by ▴ 10
2
votes
2
replies
3.2k
views
Illumina 450k Annotation Definitions/Articles: How was "Enhancer" status determined?
probe annotation illimina 450k methylation minfi methylation
10.2 years ago metamaden ▴ 10
0
votes
1
reply
2.6k
views
Analyzing 450k Methylation from TCGA Website
minfidata minfi illuminahumanmethylation450k.db illuminahumanmethylation450kanno.ilmn12.hg19
10.4 years ago alejandretheodore • 0
0
votes
7
replies
2.8k
views
Use of minfi using (maverick3.2 and Developer) on Yosemite OS
version compatibility minfi
10.4 years ago morrisht • 0
0
votes
1
reply
2.0k
views
illumina 450k methylation: Cell composition for saliva
methylation minfi illuminahumanmethylation450k.db saliva cell composition
updated 10.5 years ago by ★ 6.5k • written 10.5 years ago by ▴ 120
0
votes
3
replies
2.6k
views
minfi getProbeInfo error ( was WateRmelon betaqn error)
watermelon betaqn pfilter getProbeInfo minfi
10.6 years ago gctromp ▴ 10
0
votes
2
replies
2.0k
views
maf used in minfi dropLociWithSnps
minfi
updated 10.8 years ago by ★ 6.5k • written 10.8 years ago by • 0
1
vote
2
replies
1.9k
views
minfi package QC report error?
minfi methylation illumina
10.9 years ago Brian Smith ▴ 120
0
votes
2
replies
2.3k
views
Help resovling"Error in lm.fit" with 'dmpFinder' function in minfi
minfi minfidata illumina methylation dmpfinder
updated 11.0 years ago by 68k • written 11.0 years ago by • 0
0
votes
0
replies
1.1k
views
dmpFinder results
probe minfi probe minfi
11.2 years ago Giovanni Calice ▴ 160
0
votes
3
replies
2.5k
views
smoothing function in bumphunter in minfi
minfi bumphunter minfi bumphunter
11.3 years ago Kasper Daniel Hansen ★ 6.5k
0
votes
0
replies
1.8k
views
minfi release 1.8
SNP Annotation GO probe SNPlocs PROcess minfi bumphunter ChAMP SNP Annotation GO probe
11.3 years ago swarmqq@gmail.com ▴ 10
0
votes
4
replies
1.9k
views
error on loading ratioConvert() in minfi
convert minfi convert minfi
updated 11.3 years ago by ★ 6.5k • written 11.3 years ago by ★ 13k
2
votes
1
reply
2.0k
views
smoothing function in bumphunter in minfi
minfi bumphunter minfi bumphunter
updated 11.4 years ago by ★ 6.5k • written 11.4 years ago by ★ 13k
0
votes
1
reply
1.0k
views
error in loading minfi package
minfi minfi
updated 11.4 years ago by ★ 6.5k • written 11.4 years ago by ★ 13k
0
votes
0
replies
1.3k
views
Insignificant q-values in minfi
minfi minfi
11.4 years ago Guest User ★ 13k
0
votes
0
replies
873
views
Genes Symbols lists question
minfi minfi
11.4 years ago Giovanni Calice ▴ 160
0
votes
0
replies
1.0k
views
dmpFinder method question
minfi minfi
11.4 years ago Giovanni Calice ▴ 160
0
votes
5
replies
4.2k
views
doParallel with Bumphunter gives Error in mcfork()
minfi bumphunter minfi bumphunter
updated 11.5 years ago by ★ 4.2k • written 11.5 years ago by ★ 13k
0
votes
0
replies
2.0k
views
DMR identification: minfi speed, memory problems
Annotation convert minfi methyAnalysis bumphunter Annotation convert minfi methyAnalysis
11.6 years ago Allegra Petti ▴ 120
0
votes
6
replies
3.6k
views
DMR identification: minfi speed, memory problems
Annotation convert minfi methyAnalysis bumphunter Annotation convert minfi methyAnalysis
updated 11.6 years ago by 68k • written 11.6 years ago by ★ 13k
0
votes
5
replies
2.4k
views
Coercion lumi/minfi objects
lumi minfi lumi minfi
updated 11.6 years ago by ★ 4.2k • written 11.6 years ago by ▴ 10
0
votes
12
replies
3.6k
views
bumphunter DMRs difficulties
PROcess minfi bumphunter PROcess minfi bumphunter
updated 11.6 years ago by ★ 6.5k • written 11.6 years ago by ▴ 160
0
votes
3
replies
2.4k
views
minfi release 1.8
SNP Annotation GO probe SNPlocs PROcess minfi bumphunter ChAMP SNP Annotation GO probe
updated 11.6 years ago by ▴ 20 • written 11.6 years ago by ★ 4.2k
0
votes
0
replies
1.6k
views
minfi release 1.8
SNP Annotation minfi bumphunter SNP Annotation minfi bumphunter
11.6 years ago C T ▴ 20
0
votes
2
replies
2.1k
views
Minfi "mapToGenome" error when attempting to generate a genomicRatioSet
convert minfi convert minfi
updated 11.6 years ago by ★ 6.5k • written 11.7 years ago by ▴ 30
1
vote
2
replies
4.2k
views
How do I remove bad samples/probes before normalization and SWAN?
Normalization minfi Normalization minfi
updated 11.8 years ago by ★ 6.5k • written 11.8 years ago by ★ 13k
0
votes
2
replies
2.5k
views
minfi release 1.8
SNP Annotation minfi bumphunter SNP Annotation minfi bumphunter
updated 11.8 years ago by ★ 6.5k • written 11.8 years ago by ▴ 30
0
votes
0
replies
4.4k
views
Limma for DNA methylation arrays?
Normalization probe limma minfi Normalization probe limma minfi
11.8 years ago Gustavo Fernández Bayón ▴ 440
0
votes
1
reply
1.7k
views
minfi release 1.8
SNP Annotation minfi bumphunter SNP Annotation minfi bumphunter
updated 11.9 years ago by ▴ 30 • written 11.9 years ago by ★ 6.5k
0
votes
10
replies
2.9k
views
MethyLumiM to MethyLumiSet?
convert lumi methylumi minfi wateRmelon convert lumi methylumi minfi wateRmelon
updated 11.9 years ago by ★ 4.2k • written 11.9 years ago by ▴ 190
0
votes
1
reply
1.4k
views
minfi: RGChannelSet for illumina 27k data
minfi minfi
updated 11.9 years ago by ★ 6.5k • written 11.9 years ago by ▴ 120
0
votes
0
replies
1.3k
views
minfi: RGChannelSet
minfi minfi
11.9 years ago Guest User ★ 13k
0
votes
4
replies
3.5k
views
450k annotation packages compatible version and analysis with blockFinder (minfi)
Annotation Clustering convert minfi Annotation Clustering convert minfi
updated 11.9 years ago by ★ 6.5k • written 11.9 years ago by ▴ 50
0
votes
0
replies
1.2k
views
limma package, using a covariate?
limma minfi limma minfi
12.0 years ago Alasaari Jukka ▴ 10
281 results • Page 5 of 6
Recent ...
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Answer: Sharing a collection of datasets in ExperimentHub by shepherl 4.2k
107 packages would be a lot! It is certainly possible (and recommended) to implement one package that utilizes ExperimentHub for controlli…
Comment: GO.db and others package Download failure by James W. MacDonald 68k
Also, you never need to use anything but `BiocManager::install` to install any package, which has the beneficial side effect of ensuring th…
Comment: GO.db and others package Download failure by James W. MacDonald 68k
Yes. Your packages have odd Y version numbers (where the version is X.Y.Z). That means they are devel packages (release versions have even …
Comment: GO.db and others package Download failure by Skyler • 0
Am I using Bioc-devel?
Comment: GO.db and others package Download failure by James W. MacDonald 68k
Is there a reason to use Bioc-devel? If not, you should be using the release version (which I am, and which installs `GO.db` without compla…
Votes
Comment: readDNAStringSet with non DNA characters
Comment: Guidance on limma for pseudobulk scRNA-seq with multi-factor design
Answer: Guidance on limma for pseudobulk scRNA-seq with multi-factor design
Answer: Guidance on limma for pseudobulk scRNA-seq with multi-factor design
Comment: Guidance on limma for pseudobulk scRNA-seq with multi-factor design
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