Showing : Minfi • reset
0
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0
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1.4k
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Error in assay colnames when using readGEORawFile function in "minfi" package
minfi methylation 450k
8.8 years ago moonkinwen • 0
2
votes
1
reply
2.0k
views
Minfi: estimateCellCounts rgSet
minfi 450k flowsorted.blood.450k
updated 8.8 years ago by ▴ 200 • written 9.5 years ago by ▴ 40
4
votes
1
reply
1.6k
views
An alternative to estimateCellCounts function
minfi
8.9 years ago • updated 8.8 years ago Habil Zare ▴ 200
0
votes
0
replies
1.3k
views
Creating a GenomicRatioSet with non minfi normalized data
minfi methylation illumina450k
8.9 years ago Bioinformatician_R ▴ 20
0
votes
4
replies
2.7k
views
Error with Minfi while using read.metharray.exp() and read.metharray function
minfi illumina450k methylation
8.9 years ago Bioinformatician_R ▴ 20
0
votes
1
reply
1.5k
views
Bumphunter Algorithm Returns Regions with very few CpGs
bumphunter minfi
written 8.9 years ago by • 0
0
votes
2
replies
4.0k
views
minfi::read.metharray.exp error ("The following specified files do not exist")
minfi read.metharray.exp
8.9 years ago supermanrocketboy ▴ 10
2
votes
11
replies
11k
views
Minfi error in reading Basename column
methylation minfi
updated 8.9 years ago by ▴ 60 • written 10.1 years ago by • 0
0
votes
2
replies
1.7k
views
estimate cell counts in CordBlood using mini
minfi cellcounts cordblood
9.0 years ago darina • 0
0
votes
0
replies
976
views
Replicates need for methylation analysis using minfi
minfi methylation illimina 450k methylation
9.0 years ago arisarkar88 ▴ 40
0
votes
0
replies
746
views
Error reading GEO files using minfi's readGEORawFile function
minfi
9.0 years ago dsperley • 0
1
vote
1
reply
2.0k
views
Minfi RGChannelSet preprocessing error in assayDataElement
minfi preprocessing error
updated 9.0 years ago by ★ 6.5k • written 9.0 years ago by • 0
3
votes
3
replies
2.6k
views
Covert MethylSet to RGChannelSet object
minfi hm450
updated 9.1 years ago by ★ 6.5k • written 9.1 years ago by ▴ 10
1
vote
3
replies
1.4k
views
Positions to genes in minfi
genomicranges minfi
9.2 years ago • updated 9.1 years ago Asma rabe ▴ 290
3
votes
15
replies
7.5k
views
support for EPIC methylation arrays in minfi
minfi
updated 9.1 years ago by ▴ 10 • written 9.5 years ago by ★ 6.5k
2
votes
2
replies
1.6k
views
limma for 450K methylation array data
limma minfi
9.2 years ago Andreas Paul • 0
4
votes
3
replies
2.3k
views
Discrepanices between minifi dmp finder and lmfit
illimina 450k methylation minfi limma
9.2 years ago Andreas Paul • 0
0
votes
0
replies
1.1k
views
minfi: filtering of probes
minfi
9.2 years ago krishna312 • 0
1
vote
7
replies
3.6k
views
dmpFinder return value (minfi)
minfi dmpfinder dmp illuminahumanmethylationepicanno.ilmn10b.hg19 epic microarray
updated 9.2 years ago by 68k • written 9.2 years ago by ▴ 120
1
vote
2
replies
2.0k
views
Problem reading EPIC array data: different bead locations on different EPIC Chips
minfi illuminaio epic
9.2 years ago m.van_iterson ▴ 20
0
votes
2
replies
1.7k
views
lumi: how to get number of beads information?
lumi minfi
updated 9.2 years ago by ★ 6.5k • written 9.2 years ago by • 0
1
vote
33
replies
5.9k
views
minfi failed positions in EPIC array
minfi illuminahumanmethylationepicanno.ilmn10b.hg19
9.2 years ago Giovanni Calice ▴ 160
0
votes
3
replies
1.6k
views
Error while using minfi for EPIC array data
minfi
updated 9.2 years ago by ★ 6.5k • written 9.2 years ago by ▴ 120
0
votes
1
reply
766
views
Cell proportions in estimateCellCounts()
minfi
updated 9.2 years ago by ★ 6.5k • written 9.2 years ago by • 0
0
votes
2
replies
1.5k
views
error using EPIC early access version arrays with minfi
epic minfi read.metharray software error
9.3 years ago mcastrod • 0
1
vote
1
reply
1.6k
views
Minfi User Guide Build Problem?
minfi
updated 9.3 years ago by ★ 6.5k • written 9.3 years ago by ▴ 370
0
votes
1
reply
1.4k
views
error when using bumphunter package with illumina 450k data
minfi bumphunter DNA methylation illumina450k
updated 9.3 years ago by 68k • written 9.3 years ago by • 0
1
vote
8
replies
4.4k
views
Normalization starting from beta values in minfi
methylation minfi
written 9.3 years ago by ▴ 290
0
votes
4
replies
1.6k
views
mapToGenome minfi package
minfi
updated 9.4 years ago by ★ 6.5k • written 9.4 years ago by ▴ 290
1
vote
1
reply
1.6k
views
minfi starting from beta values
minfi
9.4 years ago Asma rabe ▴ 290
0
votes
1
reply
1.8k
views
Problem loading minfi on macOS
minfi minfidata rgl. mac os x el capitan
updated 9.4 years ago by ★ 6.5k • written 9.4 years ago by • 0
1
vote
6
replies
2.5k
views
Combining .idat and GEO data sets in minfi
minfi
9.4 years ago matts • 0
0
votes
1
reply
2.0k
views
Error in Matrix
minfi methylation EPIC microarray illumina
updated 9.4 years ago by ★ 6.5k • written 9.4 years ago by • 0
2
votes
9
replies
3.5k
views
bumphunter beta values
methylation minfi bumphunter
updated 9.4 years ago by 68k • written 9.4 years ago by ▴ 50
0
votes
0
replies
1.3k
views
minfi dmpFinder input
minfi
9.5 years ago igor ▴ 50
3
votes
15
replies
5.5k
views
Installing MethylationEPIC minifest and annotation
minfi methylation illuminahumanmethylationepicmanifest illumina
9.5 years ago rasii • 0
4
votes
4
replies
3.8k
views
How to remove unwanted probes before normalization in 450k data
minfi 450k champ rnbeads
updated 9.5 years ago by 68k • written 9.6 years ago by ▴ 60
4
votes
8
replies
4.6k
views
minfi MethylationEPIC errors
minfi methylation IlluminaHumanMethylationEPICmanifest IlluminaHumanMethylationEPICanno.ilmn10b.hg19
updated 9.5 years ago by ★ 6.5k • written 9.5 years ago by ▴ 50
0
votes
4
replies
2.0k
views
minfi sample limit
minfi illumina illimina 450k methylation methylation
updated 9.5 years ago by ★ 6.5k • written 9.5 years ago by ▴ 50
0
votes
3
replies
1.9k
views
Forum: minfi: NA values in RGChannelSet
minfi
9.5 years ago philipp24 ▴ 30
0
votes
0
replies
1.4k
views
Defining metagenes from NMF in methylation array data - next step?
NMF minfi
9.6 years ago yura.grabovska ▴ 30
4
votes
10
replies
5.4k
views
Illumina MethylationEPIC vs. 450K
methylumi minfi illuminahumanmethylation450k.db 450k methyanalysis
updated 9.6 years ago by ▴ 760 • written 9.6 years ago by ▴ 60
3
votes
7
replies
3.5k
views
estimateCellCounts Visualisations - Adjusting Beta Values for Plotting
minfi limma
updated 9.6 years ago by ▴ 20 • written 10.2 years ago by ▴ 370
0
votes
2
replies
1.7k
views
estimateCellCounts: proportions and sex
minfi
written 10.2 years ago by ▴ 20
1
vote
2
replies
3.9k
views
minfi, bumphunter + complex experimental design, and 3 other 450K queries
GO convert minfi bumphunter GO convert minfi bumphunter
updated 9.7 years ago by ▴ 30 • written 11.3 years ago by ★ 4.1k
0
votes
3
replies
2.4k
views
Paired samples and interactions models with bumphunter?
minfi bumphunter design and contrast matrix paired samples limma
9.7 years ago david.watson ▴ 30
0
votes
2
replies
1.8k
views
Error processing Infinium 450K Methylation data using Minfi
minfi software error methylation illumina450k
updated 2.4 years ago by • 0 • written 9.7 years ago by • 0
0
votes
0
replies
1.4k
views
Error processing Infinium 450K Methylation data using Minfi
minfi software error methylation illumina450k
9.7 years ago pm2015 • 0
0
votes
4
replies
3.1k
views
preprocessFunnorm in minfi
minfi 450k illuminahumanmethylation450k.db normalization
updated 9.8 years ago by 68k • written 9.8 years ago by • 0
1
vote
2
replies
1.9k
views
minfi: error with estimateCellCounts
minfi
9.8 years ago Brian Smith ▴ 120
281 results • Page 4 of 6
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Comment: DiffBind - question on the use of filtered or unfiltered input data by deltaexecutor4 • 0
FFH4X is a [Free Fire mod][1] menu APK that offers cheats like auto headshot, aimbot, ESP, wallhack, and unlimited skins. Players use it to…
Comment: GO.db and others package Download failure by James W. MacDonald 68k
Also, you never need to use anything but `BiocManager::install` to install any package, which has the beneficial side effect of ensuring th…
Comment: GO.db and others package Download failure by James W. MacDonald 68k
Yes. Your packages have odd Y version numbers (where the version is X.Y.Z). That means they are devel packages (release versions have even …
Comment: GO.db and others package Download failure by Skyler • 0
Am I using Bioc-devel?
Comment: GO.db and others package Download failure by James W. MacDonald 68k
Is there a reason to use Bioc-devel? If not, you should be using the release version (which I am, and which installs `GO.db` without compla…
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Comment: readDNAStringSet with non DNA characters
Comment: Guidance on limma for pseudobulk scRNA-seq with multi-factor design
Answer: Guidance on limma for pseudobulk scRNA-seq with multi-factor design
Answer: Guidance on limma for pseudobulk scRNA-seq with multi-factor design
Comment: Guidance on limma for pseudobulk scRNA-seq with multi-factor design
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