Bioconductor NanoString

Showing : NanoString • reset

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13k

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NanoString Differential Expressed Genes Analysis DESeq2

updated 5 months ago by James W. MacDonald 68k • written 6.5 years ago by lim6432 ▴ 60

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7.5k

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deseq2 nanostring

updated 5 months ago by Michael Love 43k • written 7.7 years ago by casey.rimland ▴ 170

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14k

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nanostring limma

updated 10.8 years ago by ker61 ▴ 20 • written 10.8 years ago by mali salmon ▴ 370

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2.3k

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deseq2 nanostring

6.1 years ago acs1990 ▴ 10

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4.3k

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deseq2 variancestabilizingtransformation nanostring

updated 8.8 years ago by Michael Love 43k • written 8.8 years ago by johnmcma ▴ 10

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2.9k

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nanostringdiff nanostring NanoStringDiff

updated 7.7 years ago by James W. MacDonald 68k • written 7.7 years ago by casey.rimland ▴ 170

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2.8k

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NanoStringDiff NanoString nCounter DE analysis

updated 2.3 years ago by georgersmith • 0 • written 6.5 years ago by lim6432 ▴ 60

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2.7k

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plotRLE Nanostring RUVSeq DESEQ2

updated 18 months ago by BioinfGuru ▴ 70 • written 4.6 years ago by xiaofeiwang18266 ▴ 60

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2.0k

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differential gene expression nanostring confounding factors

updated 7.1 years ago by James W. MacDonald 68k • written 7.1 years ago by Guillaume Robert • 0

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1.7k

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limma nanostring contrasts

updated 6.4 years ago by Gordon Smyth 53k • written 6.4 years ago by uridavid.akavia • 0

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2.6k

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NanoNormIter DifferentialExpression Housekeeping DESeq2 NanoString

updated 4.0 years ago by Michael Love 43k • written 4.0 years ago by argonvibio • 0

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3.4k

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ExpressionSet Assay NanoString Error Data

updated 3.6 years ago by James W. MacDonald 68k • written 3.6 years ago by junli1988 • 0

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1.4k

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deseq2 confounders nanostring rnaseq differential gene expression

updated 7.9 years ago by Michael Love 43k • written 7.9 years ago by kim.malek88 • 0

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2.2k

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GSVA Nanostring

7.6 years ago • updated 6.9 years ago SB • 0

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2.4k

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RUV Nanostring RUV-III

updated 5.8 years ago by hermidalc ▴ 20 • written 6.5 years ago by raf4 ▴ 30

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1.5k

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GSVA Normalization BatchEffect GSVAdata NanoString

3.1 years ago Zhijie • 0

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2.4k

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nanostring normalization

10.4 years ago alakatos ▴ 130

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1.8k

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nanostring NanoStringDiff design and contrast matrix differential gene expression ncounter

8.6 years ago c.kohler • 0

18 results • Page 1 of 1

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Comment: Postdoctoral Fellow (Computational Biology / Bioinformatics) - Neuroepigenetics by mudasarnaeem2020 • 0

Promoting UDISE+ Features on Social Media to Increase Awareness https://udisseplus.com/[enter link description here][1] [1]: https://ud…

Comment: DiffBind plot.profile error by a2sahaaaq2c • 0

To resolve technical errors like installation failures or login issues, first ensure your device allows in the security settings and that…

Comment: soGGi error by shepherl 4.3k

We have tried to contact the soGGi maintainer to have them update the package to the newer version of gglot2 but they have so far been unre…

Comment: using limma trend workflow in CAMERA by Gordon Smyth 53k

No, `trend.var=TRUE` and `trend=TRUE` are not needed in any voom pipeline, because the trend is already incorporated into the voom weights.

Comment: Questions about bacon QC and correction on EWAS results by Tikaaa2sahaaaq2c • 0

In the world of mobile games, the 88ef game download has gained traction for its performance driven design [free download][1], similar to …

Votes

Answer: DiffBind differential analysis

Answer: Limma-voom sample weights and impact on DEG numbers

C: Why limma, edgeR, and DESeq did not implement fold change moderation first?

Comment: using limma trend workflow in CAMERA

C: z-score with DESeq2?

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Popular Question to Guido Hooiveld ★ 4.1k