Showing : OrgDb • reset
1
vote
8
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1.4k
views
Error for AnnotationForge makeOrgPackageFromNCBI function
OrgDb AnnotationForge
updated 12 months ago by 68k • written 18 months ago by • 0
2
votes
2
replies
1.5k
views
OrgDb for maize
clusterProfiler OrgDb biomaRt Zea_mays
updated 18 months ago by 68k • written 18 months ago by • 0
2
votes
2
replies
1.4k
views
Only positive enrichment score in GSEA
clusterProfiler annotation gseGO gsea OrgDb
written 19 months ago by ▴ 10
1
vote
3
replies
1.0k
views
Pan-organism OrgDb database, Accession number translated to organism name in R
AccNo OrgDb convert Organismname RStudio
updated 23 months ago by 68k • written 23 months ago by • 0
2
votes
4
replies
1.4k
views
Need help generating BSgenome and orgdb
OrgDb BSgenome
24 months ago • updated 20 months ago mat149 ▴ 80
0
votes
0
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3.0k
views
Error: package or namespace load failed for 'AnnotationDbi' in loadNamespace(i, c(lib.loc, .libPaths()), versionCheck = vI[[i]]):
OrgDb
2.8 years ago hswdl • 0
1
vote
7
replies
2.4k
views
Adding geneID to list of gene locus IDs
cluster OrgDb clusterProfiler
written 2.9 years ago by • 0
1
vote
4
replies
3.1k
views
Help with creation of an OrgDB package and conduction of a bioinformatical analysis of gene expression
OrgDb
2.8 years ago hendrikwenneker ▴ 10
1
vote
9
replies
2.7k
views
Why is OrgDb linked to specific biocversion? / How to analyze old datasets?
BiocVersion OrgDb clusterProfiler
2.9 years ago MK • 0
0
votes
1
reply
1.1k
views
Share Annotation Packages
OrgDb AnnotationDbi
updated 3.0 years ago by 4.2k • written 3.0 years ago by • 0
0
votes
1
reply
1.9k
views
Exporting org.*.*.db Gene Ontology annotations to excel sheet or txt
OrgDb RNASeq
updated 3.7 years ago by 68k • written 3.7 years ago by • 0
0
votes
7
replies
6.6k
views
how to create an OrgDb package?
orgDb annotationForge
updated 3.5 years ago by • 0 • written 4.0 years ago by ▴ 20
1
vote
2
replies
2.6k
views
Translating Solanum lycopersum gene IDs to ENTREZIDs for GO enrichment analysis using clusterProfiler
OrgDb Bioconductor AnnotationHub clusterProfiler
updated 4.4 years ago by ★ 4.1k • written 4.4 years ago by • 0
0
votes
0
replies
1.3k
views
Adding to Pseudomonas aeruginosa PAO1 to OrgDb
OrgDb
4.5 years ago Thomas.H.Hampton • 0
2
votes
3
replies
2.6k
views
Gene Ontology Analysis of DE Genes
clusterProfiler AnnotationDbi OrgDb goseq
updated 4.7 years ago by 68k • written 4.7 years ago by ▴ 30
0
votes
2
replies
1.9k
views
Can't select GO from AnnotationHub orgDB packages
GO.db AnnotationHub OrgDB
updated 5.2 years ago by 68k • written 5.2 years ago by ★ 2.0k
3
votes
6
replies
3.4k
views
How to manage AnnotationHub snapshots / most OrgDB are missing?
AnnotationHub OrgDb snapshotDate
updated 3.2 years ago by 4.2k • written 5.4 years ago by ★ 2.0k
0
votes
34
replies
11k
views
Error: installation of package org.Mm.eg.db had non-zero exit status
OrgDb
updated 5.5 years ago by • 0 • written 6.0 years ago by • 0
7
votes
44
replies
8.0k
views
OrgDB download failed via AnnotationHub
annotationhub orgdb
updated 6.3 years ago by 4.2k • written 6.3 years ago by ▴ 10
3
votes
6
replies
2.5k
views
How to create a customized OrgDb in order to perform kegga analysis?
limma kegga orgdb
updated 7.7 years ago by 53k • written 7.7 years ago by • 0
0
votes
1
reply
1.7k
views
News: OrgDbs in AnnotationHub
annotationhub orgdb News
7.9 years ago shepherl 4.2k
0
votes
0
replies
1.7k
views
News: OrgDb and TxDb packages have been added to AnnotationHub for Bioc 3.6
orgdb txdb bioconductor annotation annotationhub News
8.0 years ago shepherl 4.2k
0
votes
6
replies
2.1k
views
Why are important organisms missing from AnnotationHub. Example query(hub, "Zea")
orgdb annotationhub
8.2 years ago slbai01 • 0
0
votes
2
replies
2.5k
views
add annotation features to BSgenome or txdb package
bsgenome txdb annotation orgdb
8.2 years ago Didi ▴ 10
1
vote
0
replies
1.5k
views
News: complete set of OrgDb packages have been added to AnnotationHub
bioconductor annotationhub orgdb News
8.4 years ago shepherl 4.2k
0
votes
4
replies
1.8k
views
Annotation Hub object no longer present
Orgdb
8.9 years ago • updated 8.8 years ago anamabrantesc • 0
2
votes
12
replies
2.9k
views
ann_objs$MAPCOUNTS <- AnnotationDbi:::createMAPCOUNTS(dbconn, prefix) does not work well
annotation orgdb
9.7 years ago knishida ▴ 20
3
votes
13
replies
3.7k
views
Org.db: why a supposed unique key (ID) has multiple entries?
annotationhub organismdb orgdb unsupported organisms
updated 9.7 years ago by ★ 6.8k • written 9.7 years ago by ★ 4.1k
0
votes
5
replies
2.4k
views
Why are important organisms missing from AnnotationHub() $rdataclass == "OrgDb"?
annotationhub orgdb
updated 9.9 years ago by ★ 6.8k • written 9.9 years ago by ▴ 10
0
votes
0
replies
1.5k
views
Error in makeOrgPackageFromNCBI
GO OrgDb annotate GOstats GO OrgDb annotate GOstats
12.4 years ago Chris Whelan ▴ 60
0
votes
6
replies
1.9k
views
Creating an OrganismDbi package with a few transcript annotations
OrgDb OrganismDbi OrgDb OrganismDbi
updated 12.4 years ago by 25k • written 12.4 years ago by ★ 11k
0
votes
1
reply
2.1k
views
problem creating own org.Ss.eg.db
Annotation GO Organism OrgDb Annotation GO Organism OrgDb
updated 13.6 years ago by ★ 4.1k • written 13.6 years ago by ★ 7.2k
32 results • Page 1 of 1
Recent ...
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Comment: "organism" missing in BSgenome.Hsapiens.UCSC.hg38 slotNames by James W. MacDonald 68k
R-4.5.1 is compatible with both release and devel versions of Bioconductor. Which one are you using? I am still on release, and it's fine: …
Answer: NA values for DESeq2 p-values and adjusted p-values using large sample sizes by umairmugal82 • 0
When accuracy matters in academic assessment, nothing should be left to chance. [Accurate grading made simple on EasyGrader.net][1] ensures…
Comment: Help with defining groups by Phinney, Brett ▴ 10
I got it working , thank you!!!
Comment: Check removeBatchEffect effectiveness by massimo • 0
I would kindly ask for additional support. When not including the design_timepoint argument in removeBatchEffect and thus keeping the inter…
Comment: Error Loading Experiment from SimBenchData Package by ksankaran • 0
Aha, that was it! The object was class Seurat, but I didn't have it installed. After installing, everything works as expected.
Votes
A: Different logFC (log2foldchange) values for genes from limma-voom and other too
Comment: Check removeBatchEffect effectiveness
Gene expression associated with continuous (quantitative) traits (Limma/edgeR/correlation)
Answer: Error Loading Experiment from SimBenchData Package
Comment: incomplete imputation of missing values with LEA impute() function
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