Showing : OrgDb • reset
7
votes
44
replies
8.3k
views
OrgDB download failed via AnnotationHub
annotationhub orgdb
updated 6.4 years ago by 4.2k • written 6.5 years ago by ▴ 10
3
votes
6
replies
3.4k
views
How to manage AnnotationHub snapshots / most OrgDB are missing?
AnnotationHub OrgDb snapshotDate
updated 3.4 years ago by 4.2k • written 5.6 years ago by ★ 2.0k
3
votes
6
replies
2.6k
views
How to create a customized OrgDb in order to perform kegga analysis?
limma kegga orgdb
updated 7.8 years ago by 53k • written 7.8 years ago by • 0
3
votes
13
replies
3.8k
views
Org.db: why a supposed unique key (ID) has multiple entries?
annotationhub organismdb orgdb unsupported organisms
updated 9.9 years ago by ★ 6.8k • written 9.9 years ago by ★ 4.1k
2
votes
4
replies
1.4k
views
Need help generating BSgenome and orgdb
OrgDb BSgenome
2.1 years ago • updated 22 months ago mat149 ▴ 80
2
votes
2
replies
1.4k
views
Only positive enrichment score in GSEA
clusterProfiler annotation gseGO gsea OrgDb
written 21 months ago by ▴ 10
2
votes
2
replies
1.6k
views
OrgDb for maize
clusterProfiler OrgDb biomaRt Zea_mays
updated 20 months ago by 68k • written 20 months ago by • 0
2
votes
12
replies
3.0k
views
ann_objs$MAPCOUNTS <- AnnotationDbi:::createMAPCOUNTS(dbconn, prefix) does not work well
annotation orgdb
9.8 years ago knishida ▴ 20
2
votes
3
replies
2.7k
views
Gene Ontology Analysis of DE Genes
clusterProfiler AnnotationDbi OrgDb goseq
updated 4.9 years ago by 68k • written 4.9 years ago by ▴ 30
1
vote
9
replies
2.8k
views
Why is OrgDb linked to specific biocversion? / How to analyze old datasets?
BiocVersion OrgDb clusterProfiler
3.1 years ago MK • 0
1
vote
3
replies
1.1k
views
Pan-organism OrgDb database, Accession number translated to organism name in R
AccNo OrgDb convert Organismname RStudio
updated 2.1 years ago by 68k • written 2.1 years ago by • 0
1
vote
2
replies
2.6k
views
Translating Solanum lycopersum gene IDs to ENTREZIDs for GO enrichment analysis using clusterProfiler
OrgDb Bioconductor AnnotationHub clusterProfiler
updated 4.6 years ago by ★ 4.1k • written 4.6 years ago by • 0
1
vote
0
replies
1.5k
views
News: complete set of OrgDb packages have been added to AnnotationHub
bioconductor annotationhub orgdb News
8.5 years ago shepherl 4.2k
1
vote
7
replies
2.5k
views
Adding geneID to list of gene locus IDs
cluster OrgDb clusterProfiler
written 3.1 years ago by • 0
1
vote
4
replies
3.2k
views
Help with creation of an OrgDB package and conduction of a bioinformatical analysis of gene expression
OrgDb
3.0 years ago hendrikwenneker ▴ 10
1
vote
8
replies
1.5k
views
Error for AnnotationForge makeOrgPackageFromNCBI function
OrgDb AnnotationForge
updated 14 months ago by 68k • written 20 months ago by • 0
0
votes
1
reply
1.1k
views
Share Annotation Packages
OrgDb AnnotationDbi
updated 3.2 years ago by 4.2k • written 3.2 years ago by • 0
0
votes
2
replies
2.0k
views
Can't select GO from AnnotationHub orgDB packages
GO.db AnnotationHub OrgDB
updated 5.4 years ago by 68k • written 5.4 years ago by ★ 2.0k
0
votes
1
reply
2.1k
views
problem creating own org.Ss.eg.db
Annotation GO Organism OrgDb Annotation GO Organism OrgDb
updated 13.8 years ago by ★ 4.1k • written 13.8 years ago by ★ 7.2k
0
votes
6
replies
2.0k
views
Creating an OrganismDbi package with a few transcript annotations
OrgDb OrganismDbi OrgDb OrganismDbi
updated 12.6 years ago by 25k • written 12.6 years ago by ★ 11k
0
votes
5
replies
2.5k
views
Why are important organisms missing from AnnotationHub() $rdataclass == "OrgDb"?
annotationhub orgdb
updated 10.1 years ago by ★ 6.8k • written 10.1 years ago by ▴ 10
0
votes
4
replies
1.9k
views
Annotation Hub object no longer present
Orgdb
9.0 years ago anamabrantesc • 0
0
votes
2
replies
2.5k
views
add annotation features to BSgenome or txdb package
bsgenome txdb annotation orgdb
8.4 years ago Didi ▴ 10
0
votes
6
replies
2.2k
views
Why are important organisms missing from AnnotationHub. Example query(hub, "Zea")
orgdb annotationhub
8.3 years ago slbai01 • 0
0
votes
0
replies
1.7k
views
News: OrgDb and TxDb packages have been added to AnnotationHub for Bioc 3.6
orgdb txdb bioconductor annotation annotationhub News
8.1 years ago shepherl 4.2k
0
votes
1
reply
1.8k
views
News: OrgDbs in AnnotationHub
annotationhub orgdb News
8.1 years ago shepherl 4.2k
0
votes
34
replies
12k
views
Error: installation of package org.Mm.eg.db had non-zero exit status
OrgDb
updated 5.7 years ago by • 0 • written 6.1 years ago by • 0
0
votes
0
replies
1.3k
views
Adding to Pseudomonas aeruginosa PAO1 to OrgDb
OrgDb
4.7 years ago Thomas.H.Hampton • 0
0
votes
7
replies
6.8k
views
how to create an OrgDb package?
orgDb annotationForge
updated 3.7 years ago by • 0 • written 4.2 years ago by ▴ 20
0
votes
1
reply
2.0k
views
Exporting org.*.*.db Gene Ontology annotations to excel sheet or txt
OrgDb RNASeq
updated 3.9 years ago by 68k • written 3.9 years ago by • 0
0
votes
0
replies
3.1k
views
Error: package or namespace load failed for 'AnnotationDbi' in loadNamespace(i, c(lib.loc, .libPaths()), versionCheck = vI[[i]]):
OrgDb
3.0 years ago hswdl • 0
0
votes
0
replies
1.6k
views
Error in makeOrgPackageFromNCBI
GO OrgDb annotate GOstats GO OrgDb annotate GOstats
12.5 years ago Chris Whelan ▴ 60
32 results • Page 1 of 1
Recent ...
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You should read the documentation in the package especially the package vignette https://bioconductor.org/packages/release/bioc/html/NuPoP.…
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In a rocker image, this error usually means the Bioconductor install happened as root but the runtime library paths used by the shiny user …
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Are the sequences aligned (i.e., the same width) before running `TileSeqs()`?
Votes
C: DESeq2 Following RSEM
Upcoming Ensembl API and data access changes - new blog post available
Comment: Highly similar RNA-seq samples in PCA - pooling or technical duplication?
Answer: Large logFC but somewhat high FDR
Comment: upstream git branches of bioc-release
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