Log In
Sign Up
about
faq
Ask a question
Latest
News
Jobs
Tutorials
Tags
Users
New Post
Latest
News
Jobs
Tutorials
Tags
Users
Log In
Sign Up
About
Limit
all time
today
this week
this month
this year
Unanswered
All posts
Sort
Update
Answers
Bookmarks
Creation
Replies
Rank
Views
Votes
Showing :
SCAN.UPC
•
reset
1
vote
3
replies
1.6k
views
SCAN UPC normalisation
normalization
scan.upc
9.1 years ago
sanj
▴ 20
2
votes
8
replies
1.9k
views
Transcript-level SCAN.UPC preprocessing for Affymetrix HTA 2.0 arrays
microarray
scan.upc
hta2.0
updated 6.3 years ago by
Stephen Piccolo
▴ 590 • written 6.4 years ago by
Lukas__
• 0
0
votes
1
reply
1.2k
views
[combat] UPC availablility
affy
frma
SCAN.UPC
affy
frma
SCAN.UPC
updated 11.5 years ago by
Stephen Piccolo
▴ 590 • written 11.5 years ago by
W. Evan Johnson
▴ 850
0
votes
1
reply
1.4k
views
SCAN-UPC: 12079 of 22283 probes returned for hgu133a CELs?
hgu133a
probe
affy
SCAN.UPC
hgu133a
probe
affy
SCAN.UPC
updated 11.2 years ago by
Andrew Yates
▴ 20 • written 11.2 years ago by
Stephen Piccolo
▴ 590
0
votes
1
reply
1.5k
views
SCAN-UPC: 12079 of 22283 probes returned for hgu133a CELs?
Normalization
hgu133a
probe
affy
PROcess
SCAN.UPC
Normalization
hgu133a
probe
affy
updated 11.0 years ago by
Andrew Yates
▴ 20 • written 11.0 years ago by
Stephen Piccolo
▴ 590
0
votes
1
reply
1.2k
views
fRMA without using ReadAffy()
frma
SCAN.UPC
frma
SCAN.UPC
updated 10.9 years ago by
Matthew McCall
▴ 830 • written 10.9 years ago by
S.D. Chorlton
▴ 10
0
votes
2
replies
1.5k
views
SCAN.UPC vs NUSE
affy
affyPLM
SCAN.UPC
affy
affyPLM
SCAN.UPC
updated 10.6 years ago by
Stephen Piccolo
▴ 590 • written 10.6 years ago by
Leif Peterson
▴ 10
0
votes
3
replies
1.3k
views
ParseMetaFromGtfFile is.na() error
Annotation
SCAN.UPC
Annotation
SCAN.UPC
updated 9.9 years ago by
Michael Lawrence
★ 11k • written 9.9 years ago by
Guest User
★ 13k
2
votes
4
replies
1.2k
views
SCAN.UPC : lost too many samples from GSE (BrainArray + ConvThreshold)
SCAN.UPC
probe
normalization
GEOdata
cancer
5.1 years ago
s.goncalvesclaro
▴ 10
0
votes
1
reply
1.4k
views
SCAN UPC probability - validation of gene expression results using UPC
hgu133a2
safe
SCAN.UPC
hgu133a2
safe
SCAN.UPC
updated 11.5 years ago by
Stephen Piccolo
▴ 590 • written 11.5 years ago by
W. Evan Johnson
▴ 850
0
votes
3
replies
1.5k
views
SCAN.UPC giving error for multiple input files
scan.upc
updated 8.7 years ago by
Stephen Piccolo
▴ 590 • written 8.7 years ago by
Vani
▴ 20
0
votes
1
reply
1.2k
views
SCAN.UPC eset not providing phenoData
scan.upc
eset
updated 8.7 years ago by
Stephen Piccolo
▴ 590 • written 8.7 years ago by
Jo
▴ 30
0
votes
1
reply
1.2k
views
RNA-Seq Read Counts for SCAN.UPC
scan.upc
rnaseq
updated 8.4 years ago by
Stephen Piccolo
▴ 590 • written 8.4 years ago by
Jo
▴ 30
0
votes
1
reply
1.2k
views
UPC RNA-Seq individual samples
scan.upc
upc
rnaseq
updated 8.4 years ago by
Stephen Piccolo
▴ 590 • written 8.4 years ago by
Jo
▴ 30
0
votes
2
replies
1.5k
views
UPC method giving error for Microarray dataset
scan.upc
UPC
updated 8.3 years ago by
Stephen Piccolo
▴ 590 • written 8.4 years ago by
Vani
▴ 20
0
votes
2
replies
1.4k
views
UPC correction for GC content?
scan.upc
upc_generic_expressionset
upc
updated 8.2 years ago by
Stephen Piccolo
▴ 590 • written 8.2 years ago by
minnie
• 0
1
vote
2
replies
1.1k
views
UPC transposes output data
scan.upc
updated 7.2 years ago by
Stephen Piccolo
▴ 590 • written 7.2 years ago by
guus.steeg
▴ 10
4
votes
13
replies
2.1k
views
Why is batch effect correction an option in SCAN.UPC normalization?
scan.upc
upc
normalization
batch effect correction
updated 5.7 years ago by
Stephen Piccolo
▴ 590 • written 5.7 years ago by
y.li.1
• 0
1
vote
4
replies
1.2k
views
ParseMetaFromGtfFile() from SCAN.UPC package fails to produce annotation file
annotation
SCAN.UPC
updated 6.7 years ago by
Stephen Piccolo
▴ 590 • written 6.7 years ago by
lhuang7
▴ 50
0
votes
5
replies
1.9k
views
Single sample normalization of single-channel Agilent microarrays
affy
frma
SCAN.UPC
affy
frma
SCAN.UPC
updated 9.7 years ago by
Ryan C. Thompson
★ 7.9k • written 9.7 years ago by
Guest User
★ 13k
2
votes
13
replies
2.8k
views
SCAN.UPC: exception thrown when loading GEOQuery
scan.upc
geoquery
rcurl
9.3 years ago
lep
▴ 90
0
votes
1
reply
1.2k
views
SCAN.UPC for Agilent single channel and Illumina
microarray
scan.upc
updated 9.2 years ago by
Stephen Piccolo
▴ 590 • written 9.2 years ago by
sathyabaarathi
• 0
0
votes
4
replies
1.7k
views
SCAN-normalized values on log2 scale?
scan.upc
updated 8.8 years ago by
Stephen Piccolo
▴ 590 • written 8.8 years ago by
Jenny Drnevich
★ 2.0k
0
votes
0
replies
884
views
FYI: SCAN.UPC and HuGene 1/2 arrays
SCAN.UPC
SCAN.UPC
9.9 years ago
Stephen Piccolo
▴ 590
0
votes
0
replies
1.1k
views
about expression value generated by SCAN UPC package
SCAN.UPC
SCAN.UPC
11.1 years ago
gregory voisin
▴ 430
0
votes
3
replies
1.2k
views
Comparing SCAN Q.value with Meta-Analyses Q.Value
scan.upc
scan
meta
q value
8.4 years ago
Jo
▴ 30
1
vote
3
replies
1.2k
views
Normalization of multiple HTA 2.0 arays using SCAN.UPC
scan.upc
6.5 years ago
Seymoo
• 0
0
votes
0
replies
1.2k
views
Problem when trying to use \'affy\' package
Normalization
GO
affy
sva
SCAN.UPC
Normalization
GO
affy
sva
SCAN.UPC
10.3 years ago
Kaj Chokeshaiusaha
▴ 140
1
vote
2
replies
1.4k
views
Problem Installing SCAN.UPC
scan.upc
installation
bioconductor
8.8 years ago
Vani
▴ 20
0
votes
9
replies
2.3k
views
Question about Agilent microarray data measurement
Agilent
limma
scan.upc
microarray
7.5 years ago
Maximilian
▴ 10
0
votes
1
reply
997
views
Error when using write.table() with SCAN.UPC ESET
scan.upc
write.table
8.7 years ago
Vani
▴ 20
0
votes
1
reply
1.2k
views
Error with SCAN.UPC UPC_RNASeq method
scan.upc
RNA-Seq
UPC
8.4 years ago
vn
• 0
32 results • Page
1 of 1
Recent ...
Replies
Comment: Deseq2 and Normalization of RNA sequencing data
by
kcarey
• 0
Noise in terms of expression...to make sure that the information reported is not due to artifacts and actually expression. When I had FPKM …
Answer: NEED FOR NESSASORY HELP
by
Gordon Smyth
50k
Is this quesion related to your earlier question? https://support.bioconductor.org/p/9157127/ If you've already done an edgeR analysis, yo…
Answer: Gene-by-sample covariates in limma
by
Gordon Smyth
50k
Your first method would be valid if, instead of taking ratios, you instead used the differences between the log-transformed 13C and 12C int…
Answer: Why does GSEA on edgeR results for randomized samples give highly significant p-
by
Gordon Smyth
50k
You have discovered something that I have pointed out many times on this forum. fgsea does not implement the classic GSEA method published …
Comment: Once again a "Model matrix not full rank"
by
James W. MacDonald
65k
In that case both time and treatment are identical things, so choose one and go with it.
Votes
Bioconductor 3.19 is Released!
A: Error in DESeqDataSet : some values in assay are not integers
Bioconductor 3.19 is Released!
Bioconductor 3.19 is Released!
Answer: DEseq2 coefficient
Awards
• All
Popular Question
to
gene_bioconductor
▴ 10
Popular Question
to
rohitsatyam102
▴ 20
Popular Question
to
shepherl
3.9k
Popular Question
to
siajunren
• 0
Scholar
to
Rory Stark
★ 5.2k
Locations
• All
United States,
11 minutes ago
France,
14 minutes ago
WEHI, Melbourne, Australia,
19 minutes ago
United States,
1 hour ago
European Union,
2 hours ago
Traffic: 547 users visited in the last hour
Content
Search
Users
Tags
Badges
Help
About
FAQ
Access
RSS
API
Stats
Use of this site constitutes acceptance of our
User Agreement and Privacy Policy
.
Powered by the
version 2.3.6