Showing : affy • reset
0
votes
0
replies
27
views
ERROR; return code from pthread_create() is 22
affy
23 hours ago • updated 3 hours ago pickingastar • 0
1
vote
10
replies
478
views
Obtaining pheno data from CEL files
GEO affy
6 weeks ago • updated 5 weeks ago Kurtis • 0
1
vote
2
replies
239
views
Problem with maplot {affy} method when using rma {affy} method output as its input
maplot_function rma_function ExpressionSet MicroarrayData affy
7 weeks ago Mj.A. • 0
1
vote
3
replies
378
views
frma normalization
frmaTools affy
updated 12 weeks ago by 65k • written 3 months ago by • 0
0
votes
11
replies
2.1k
views
globaltest question
Pathways probe affy Pathways probe affy
written 17.7 years ago by ▴ 30
0
votes
5
replies
2.0k
views
Normalizing Affy Almac Xcel Array Data from CEL files
Annotation affy oligo ffpe Annotation affy oligo ffpe
written 10.4 years ago by ★ 13k
0
votes
6
replies
2.2k
views
Error when Installing BioConductor Package ('affy')
Bioconductor Install affy
updated 6 months ago by ★ 4.1k • written 17 months ago by • 0
0
votes
1
reply
642
views
affy package and SNP arrays
crlmm hapmapsnp6 genomewidesnp6Crlmm affy
updated 10 months ago by ★ 3.9k • written 10 months ago by 6.7k
2
votes
3
replies
920
views
Using gcrma() and using the t-test to compare single genes of interest for disease vs healthy comparison?
gcrma CustomCDF Affyhgu133aExpr limma affy
updated 13 months ago by 65k • written 13 months ago by ▴ 10
0
votes
3
replies
1.6k
views
*** caught segfault *** , cause 'memory not mapped'
affycoretools FRMA affyio AffymetrixDataTestFiles affy
updated 13 months ago by 65k • written 13 months ago by • 0
0
votes
1
reply
1.3k
views
limma: decideTests
affy limma affy limma
updated 16 months ago by 50k • written 16.4 years ago by ▴ 270
3
votes
9
replies
2.3k
views
Installing 'affy' package on MacOS M2 chip
nlme affy preprocessCore
updated 19 months ago by 65k • written 19 months ago by • 0
1
vote
3
replies
1.2k
views
Microarray - Illumina Metadata
limma GEO MicroarrayData affy
updated 2.6 years ago by 65k • written 2.6 years ago by • 0
0
votes
0
replies
864
views
Reading Affymetrix Axiom files
affy SNP axiom
3.0 years ago f.calboli • 0
1
vote
3
replies
978
views
The eBayes function gives two p-values for each row
hgu133plus2.db limma DifferentialExpression affy
updated 3.0 years ago by 50k • written 3.0 years ago by • 0
2
votes
2
replies
998
views
Subscript out of bounds while normalising using affy::rma()
Normalization affy AffymetrixChip
3.0 years ago geoffrey ▴ 10
0
votes
1
reply
1.4k
views
filtering on variance
probe affy probe affy
updated 3.1 years ago by 50k • written 16.4 years ago by ▴ 90
0
votes
1
reply
2.0k
views
How to plot the RMA log2 normalised data from Affymetrix
log2 RMA Affymetrix affy Normalization
updated 3.2 years ago by ★ 3.9k • written 3.2 years ago by • 0
1
vote
2
replies
1.1k
views
Getting error in collapsing the affy probs
affy eset
updated 3.3 years ago by 65k • written 3.3 years ago by ▴ 30
0
votes
3
replies
1.4k
views
ReadAffy does not take into account parameter sampleNames with phenoData object
affycoretools ReadAffy Biobase phenoData affy
updated 3.4 years ago by 65k • written 3.4 years ago by • 0
5
votes
8
replies
2.5k
views
how to annotate arrays
affy annotation microarray oligo
updated 3.4 years ago by 65k • written 8.8 years ago by • 0
1
vote
3
replies
2.4k
views
Annotating [HuGene-1_0-st] Affymetrix Human Gene 1.0 ST Array [transcript (gene) version] file
microarray annotation affy
3.6 years ago kiera.lee ▴ 10
4
votes
7
replies
1.5k
views
Limma sample groups
microarray limma affy cancer
updated 3.6 years ago by 50k • written 3.6 years ago by • 0
0
votes
0
replies
679
views
Probe Design questions
probe affy
3.7 years ago henry1995910343 • 0
0
votes
2
replies
1.1k
views
What is the best way to do annotation of the transcript clusters and filter in HTA 2.0
HTA2.0 microarray affy r
3.7 years ago Marco_aurelio • 0
0
votes
6
replies
1.1k
views
Problems loading latest Version of S4Vectors
affy
3.7 years ago ianrector97 • 0
5
votes
9
replies
3.2k
views
Pipeline to analyzing Microarray data set( GSE files from NCBI GEO)
microarray affy
updated 3.9 years ago by ★ 3.9k • written 3.9 years ago by ▴ 30
0
votes
2
replies
1.0k
views
How to process triplicate cel data?
microarray affy cel drugmatrix
updated 3.9 years ago by 50k • written 3.9 years ago by • 0
6
votes
3
replies
1.4k
views
GEOquery: preprocessing log of imported data
GEOquery microarray lumi affy limma
updated 3.9 years ago by 21k • written 3.9 years ago by ▴ 40
2
votes
7
replies
1.2k
views
Affycoretools package, HTA 2.0 annotation for non-coding RNA
affy rna hta2.0 r
updated 4.0 years ago by 65k • written 4.0 years ago by • 0
1
vote
1
reply
660
views
Microarray Workflow - NA error
limma affy
updated 4.0 years ago by ★ 3.9k • written 4.0 years ago by • 0
3
votes
4
replies
1.1k
views
gcrma problem with make.cdf.package
gcrma make.cdf.package affy
updated 4.1 years ago by 65k • written 4.1 years ago by ▴ 40
0
votes
1
reply
940
views
Problem analyzing Affymetrix Microarray data from Clariom S Mouse
affy oligo Clariom S Mouse microarray
updated 4.1 years ago by 65k • written 4.1 years ago by • 0
0
votes
1
reply
605
views
Affymetrix microarray - Limma on timepoint experiment, how to make the design and contrast matrix ?
limma R microarray timepoint affy
updated 4.1 years ago by 3.9k • written 4.1 years ago by • 0
1
vote
1
reply
1.0k
views
Trouble using affy library
software error R microarray affy
updated 4.2 years ago by 65k • written 4.2 years ago by • 0
1
vote
1
reply
1.7k
views
How to annotate the Affymetrix data HTA-2.0 with oligo
annotation affy normalization
updated 4.3 years ago by ★ 4.0k • written 4.3 years ago by • 0
0
votes
2
replies
1.3k
views
3' microarray data using Affy - can't find cdf file, please help!
Affy microarray cdf
updated 4.4 years ago by 65k • written 4.4 years ago by • 0
0
votes
1
reply
879
views
limma Multi-level Experiments - Main effect test
limma microarray affy
updated 4.5 years ago by 50k • written 4.5 years ago by • 0
0
votes
2
replies
1.0k
views
Ask for help on the preprocessing of GEO microarray data with Oligo and affy package
affy rma frma oligo
updated 4.5 years ago by 65k • written 4.5 years ago by • 0
3
votes
2
replies
886
views
issue with hgu95acdf package
affy
updated 4.5 years ago by 25k • written 4.5 years ago by • 0
0
votes
1
reply
954
views
Still Not Recognizing CDF
affy CDF
4.5 years ago ekl • 0
1
vote
5
replies
1.8k
views
CDf files in R
affy CDF
updated 4.5 years ago by 65k • written 4.5 years ago by • 0
1
vote
2
replies
1000
views
What should I do with the package:org.Hs.eg.db?
microarray affy
updated 4.6 years ago by 25k • written 4.6 years ago by ▴ 10
2
votes
4
replies
1.5k
views
Using function select
Affy
updated 4.6 years ago by 65k • written 4.6 years ago by • 0
3
votes
8
replies
2.5k
views
Error: 'exprs<-' is not an exported object from 'namespace:affy'
affy limma piano
updated 4.7 years ago by 65k • written 4.7 years ago by • 0
0
votes
0
replies
737
views
Different versions of r/affy combination may lead to differences in rma normalization results
microarray affy rma normalization affy package
4.8 years ago yshuang • 0
1
vote
2
replies
2.1k
views
CDF not found
Affy microarray
updated 4.8 years ago by ★ 4.0k • written 4.8 years ago by ▴ 10
0
votes
0
replies
767
views
Fold Change Calculation in edge package
edge microarray limma affy
4.9 years ago soumyab.g ▴ 10
6
votes
8
replies
1.8k
views
How to find out the genes that changes in expression by using gene level expression data matrix?
limma microarray affy edger
4.9 years ago Jurat Shahidin ▴ 80
1
vote
2
replies
783
views
"hgu133plus2db" package not working in R
microarray affy annotation
updated 5.0 years ago by 65k • written 5.0 years ago by • 0
50 results • Page 1 of 1
Recent ...
Replies
Answer: Subsetting RNAseq data | voomaByGroup() by Gordon Smyth 50k
Judging from your MDS plot, cell types 1 and 2 look radically different, so it would make perfect sense to analyse them separately. There's…
Answer: Numerical differences in DESeq2 output depending on different design matrix cons by Michael Love 42k
Yes there can be small numerical differences in the estimated quantities because of how the algorithms decide to stop iterating.
Answer: DESeq2- Mysterious interaction suppresses DEGs by Michael Love 42k
Removing samples from one group nevertheless changes the variance estimation (dispersion) for all comparisons. So you could have pushed one…
Comment: Ensembl plants at annotationHub? by Daniele • 0
Hi, I'm using Ensembl Plants release 59 with the IWGSC RefSeq v1.1 gene annotation. Thanks a lot for replying so quickly!
Comment: Numerical differences in DESeq2 output depending on different design matrix cons by swbarnes2 ★ 1.4k
If you restrict yourself to, say, genes with a baseMean > 50, are the numerical differences between the two designs significant?
Votes
Answer: Error while installing BiocManager::install("org.Vdahliae.eg.db")
Comment: How can I create a eigencorplot of pca created from deseq2 object with PCAtools
Answer: Importing a GraphNEL into Cytoscape with RCy3 with error: "Error in cyrestPUT(pa
Answer: Importing a GraphNEL into Cytoscape with RCy3 with error: "Error in cyrestPUT(pa
Rsubread counting peaks ATACseq
Awards • All
Popular Question to Dario Strbenac ★ 1.5k
Popular Question to Vincent J. Carey, Jr. 6.7k
Popular Question to Koen Van den Berge ▴ 180
Popular Question to shepherl 3.9k
Popular Question to Ken C • 0
Locations • All
UPF, Barcelona, Spain, just now
Slovakia, 6 minutes ago
Pakistan, 8 minutes ago
WEHI, Melbourne, Australia, 10 minutes ago
Poland, 1 hour ago
Traffic: 365 users visited in the last hour
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6