Showing : affy • reset
0
votes
1
reply
96
views
ERROR; return code from pthread_create() is 22
affy
updated 7 days ago by 66k • written 9 days ago by • 0
1
vote
10
replies
491
views
Obtaining pheno data from CEL files
GEO affy
7 weeks ago • updated 6 weeks ago Kurtis • 0
1
vote
2
replies
248
views
Problem with maplot {affy} method when using rma {affy} method output as its input
maplot_function rma_function ExpressionSet MicroarrayData affy
8 weeks ago Mj.A. • 0
0
votes
6
replies
1.3k
views
LIMMA : design (1, 2, 3, 3 ) , I got EXCITING results, what could be the logic, since i have 2 replicates for 3rd group only ?
affy affy
updated 12 weeks ago by 50k • written 19.1 years ago by ★ 1.1k
1
vote
3
replies
391
views
frma normalization
frmaTools affy
updated 3 months ago by 66k • written 3 months ago by • 0
0
votes
11
replies
2.1k
views
globaltest question
Pathways probe affy Pathways probe affy
written 17.7 years ago by ▴ 30
0
votes
5
replies
2.0k
views
Normalizing Affy Almac Xcel Array Data from CEL files
Annotation affy oligo ffpe Annotation affy oligo ffpe
written 10.4 years ago by ★ 13k
0
votes
6
replies
2.2k
views
Error when Installing BioConductor Package ('affy')
Bioconductor Install affy
updated 6 months ago by ★ 4.2k • written 18 months ago by • 0
0
votes
2
replies
1.4k
views
Minimum expression threshold?
multtest affy multtest affy
updated 9 months ago by • 0 • written 20.7 years ago by ▴ 20
0
votes
1
reply
664
views
affy package and SNP arrays
crlmm hapmapsnp6 genomewidesnp6Crlmm affy
updated 11 months ago by ★ 3.9k • written 11 months ago by 6.7k
2
votes
3
replies
939
views
Using gcrma() and using the t-test to compare single genes of interest for disease vs healthy comparison?
gcrma CustomCDF Affyhgu133aExpr limma affy
updated 13 months ago by 66k • written 13 months ago by ▴ 10
0
votes
3
replies
1.7k
views
*** caught segfault *** , cause 'memory not mapped'
affycoretools FRMA affyio AffymetrixDataTestFiles affy
updated 14 months ago by 66k • written 14 months ago by • 0
0
votes
1
reply
1.3k
views
limma: decideTests
affy limma affy limma
updated 16 months ago by 50k • written 16.4 years ago by ▴ 270
0
votes
0
replies
1.6k
views
limma: decideTests
limma probe affy
16.4 years ago • updated 16 months ago Gordon Smyth 50k
3
votes
9
replies
2.3k
views
Installing 'affy' package on MacOS M2 chip
nlme affy preprocessCore
updated 19 months ago by 66k • written 19 months ago by • 0
1
vote
3
replies
1.2k
views
Microarray - Illumina Metadata
limma GEO MicroarrayData affy
updated 2.7 years ago by 66k • written 2.7 years ago by • 0
0
votes
0
replies
876
views
Reading Affymetrix Axiom files
affy SNP axiom
3.0 years ago f.calboli • 0
1
vote
3
replies
987
views
The eBayes function gives two p-values for each row
hgu133plus2.db limma DifferentialExpression affy
updated 3.0 years ago by 50k • written 3.0 years ago by • 0
2
votes
2
replies
1000
views
Subscript out of bounds while normalising using affy::rma()
Normalization affy AffymetrixChip
3.0 years ago geoffrey ▴ 10
0
votes
1
reply
1.4k
views
filtering on variance
probe affy probe affy
updated 3.1 years ago by 50k • written 16.5 years ago by ▴ 90
0
votes
3
replies
3.8k
views
How do I choose between using affy or oligo package for preprocessing microarrays?
microarray affymetrix microarrays affy oligo
updated 3.2 years ago by 66k • written 7.3 years ago by • 0
0
votes
1
reply
2.0k
views
How to plot the RMA log2 normalised data from Affymetrix
log2 RMA Affymetrix affy Normalization
updated 3.2 years ago by ★ 3.9k • written 3.2 years ago by • 0
1
vote
2
replies
1.1k
views
Getting error in collapsing the affy probs
affy eset
updated 3.3 years ago by 66k • written 3.3 years ago by ▴ 30
0
votes
3
replies
1.4k
views
ReadAffy does not take into account parameter sampleNames with phenoData object
affycoretools ReadAffy Biobase phenoData affy
updated 3.4 years ago by 66k • written 3.4 years ago by • 0
5
votes
8
replies
2.5k
views
how to annotate arrays
affy annotation microarray oligo
updated 3.5 years ago by 66k • written 8.8 years ago by • 0
1
vote
3
replies
2.4k
views
Annotating [HuGene-1_0-st] Affymetrix Human Gene 1.0 ST Array [transcript (gene) version] file
microarray annotation affy
3.6 years ago kiera.lee ▴ 10
4
votes
7
replies
1.5k
views
Limma sample groups
microarray limma affy cancer
updated 3.7 years ago by 50k • written 3.7 years ago by • 0
0
votes
0
replies
694
views
Probe Design questions
probe affy
3.7 years ago henry1995910343 • 0
0
votes
2
replies
1.1k
views
What is the best way to do annotation of the transcript clusters and filter in HTA 2.0
HTA2.0 microarray affy r
3.7 years ago Marco_aurelio • 0
0
votes
6
replies
1.1k
views
Problems loading latest Version of S4Vectors
affy
3.8 years ago ianrector97 • 0
5
votes
9
replies
3.2k
views
Pipeline to analyzing Microarray data set( GSE files from NCBI GEO)
microarray affy
updated 3.9 years ago by ★ 3.9k • written 3.9 years ago by ▴ 30
0
votes
2
replies
1.0k
views
How to process triplicate cel data?
microarray affy cel drugmatrix
updated 4.0 years ago by 50k • written 4.0 years ago by • 0
6
votes
3
replies
1.4k
views
GEOquery: preprocessing log of imported data
GEOquery microarray lumi affy limma
updated 4.0 years ago by 21k • written 4.0 years ago by ▴ 40
2
votes
7
replies
1.3k
views
Affycoretools package, HTA 2.0 annotation for non-coding RNA
affy rna hta2.0 r
updated 4.0 years ago by 66k • written 4.0 years ago by • 0
1
vote
1
reply
675
views
Microarray Workflow - NA error
limma affy
updated 4.1 years ago by ★ 3.9k • written 4.1 years ago by • 0
3
votes
4
replies
1.1k
views
gcrma problem with make.cdf.package
gcrma make.cdf.package affy
updated 4.1 years ago by 66k • written 4.1 years ago by ▴ 40
0
votes
1
reply
947
views
Problem analyzing Affymetrix Microarray data from Clariom S Mouse
affy oligo Clariom S Mouse microarray
updated 4.1 years ago by 66k • written 4.1 years ago by • 0
0
votes
1
reply
610
views
Affymetrix microarray - Limma on timepoint experiment, how to make the design and contrast matrix ?
limma R microarray timepoint affy
updated 4.2 years ago by 3.9k • written 4.2 years ago by • 0
1
vote
1
reply
1.0k
views
Trouble using affy library
software error R microarray affy
updated 4.2 years ago by 66k • written 4.2 years ago by • 0
1
vote
1
reply
1.7k
views
How to annotate the Affymetrix data HTA-2.0 with oligo
annotation affy normalization
updated 4.3 years ago by ★ 4.0k • written 4.3 years ago by • 0
0
votes
2
replies
1.3k
views
3' microarray data using Affy - can't find cdf file, please help!
Affy microarray cdf
updated 4.5 years ago by 66k • written 4.5 years ago by • 0
0
votes
1
reply
885
views
limma Multi-level Experiments - Main effect test
limma microarray affy
updated 4.5 years ago by 50k • written 4.5 years ago by • 0
0
votes
2
replies
1.1k
views
Ask for help on the preprocessing of GEO microarray data with Oligo and affy package
affy rma frma oligo
updated 4.5 years ago by 66k • written 4.5 years ago by • 0
3
votes
2
replies
891
views
issue with hgu95acdf package
affy
updated 4.5 years ago by 25k • written 4.5 years ago by • 0
0
votes
1
reply
967
views
Still Not Recognizing CDF
affy CDF
4.6 years ago ekl • 0
1
vote
5
replies
1.8k
views
CDf files in R
affy CDF
updated 4.6 years ago by 66k • written 4.6 years ago by • 0
1
vote
2
replies
1.0k
views
What should I do with the package:org.Hs.eg.db?
microarray affy
updated 4.6 years ago by 25k • written 4.6 years ago by ▴ 10
2
votes
4
replies
1.5k
views
Using function select
Affy
updated 4.6 years ago by 66k • written 4.6 years ago by • 0
3
votes
8
replies
2.5k
views
Error: 'exprs<-' is not an exported object from 'namespace:affy'
affy limma piano
updated 4.7 years ago by 66k • written 4.7 years ago by • 0
0
votes
0
replies
742
views
Different versions of r/affy combination may lead to differences in rma normalization results
microarray affy rma normalization affy package
4.8 years ago yshuang • 0
50 results • Page 1 of 1
Recent ...
Replies
Comment: Cannot install oligo on Fedora by mbassal • 0
so whats the solution for this error?
Comment: Why is longestConsecutive() depreceated in version 2.72 (BioC version 3.19)? by ATpoint ★ 4.2k
I don't have an answer to the "why" but maybe a simple reimplemention will do: ```r seqs <- c("ATCATCGTATCAAAGTC", "AAAACGTATCAAAGTC", "TG…
Comment: How to add Ensembl ids after Pseudobulk analysis by DESeq2 by Guido Hooiveld ★ 4.0k
After checking `?DESeqDataSetFromMatrix` note this information: arguments provided to SummarizedExperiment including rowRanges and met…
Answer: Error in gseDO function by Guido Hooiveld ★ 4.0k
Yes, you are missing something. :-) For a GSEA you will need to use as input all genes that you are analyzing; these genes should be ran…
Comment: GSVA function by Robert Castelo ★ 3.3k
No, negative values may occur after log transformation when the `log(x)` is taken from a positive number `x with 0 < x < 1`, and therefore …
Votes
A: Comparison between two different group's pathway analysis results
DiffBind Batch Effect
A: DiffBind Batch Effect
A: DiffBind Batch Effect
C: DiffBind Batch Effect
Awards • All
Popular Question to Robert Castelo ★ 3.3k
Popular Question to kevin.rue ▴ 350
Popular Question to Wei Shi ★ 3.6k
Popular Question to Gordon Smyth 50k
Popular Question to jovel_juan ▴ 30
Locations • All
South Korea, 6 minutes ago
The city by the bay, 6 minutes ago
Australia, 9 minutes ago
India, 9 minutes ago
WEHI, Melbourne, Australia, 20 minutes ago
Traffic: 501 users visited in the last hour
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6