Showing : affylmGUI • reset
2
votes
8
replies
781
views
AffylmGUI does not start wit R 4.4.1
affylmGUI
updated 9 weeks ago by 52k • written 3 months ago by ▴ 30
1
vote
6
replies
1.5k
views
Error while running affylmGUI
microarray limma affy affylmGUI
updated 5.8 years ago by 52k • written 5.8 years ago by • 0
0
votes
2
replies
2.5k
views
How to convert probe sets to Gene symbols ?
affylmgui affymetrix microarrays hgu133plus2
updated 9.0 years ago by ▴ 370 • written 9.0 years ago by • 0
0
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3
replies
1.5k
views
affylmGUI affy affymetrix
affylmgui
updated 9.0 years ago by 52k • written 9.0 years ago by • 0
0
votes
4
replies
1.6k
views
Regarding CDF file
cdf affylmGUI cdf affylmGUI
updated 11.5 years ago by 67k • written 11.5 years ago by ▴ 170
0
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1
reply
1.1k
views
AffylmGUI freezes with recent updates of Windows 7 Enterprise Service Pack 1
Cancer affylmGUI Cancer affylmGUI
updated 11.9 years ago by ▴ 450 • written 11.9 years ago by ★ 2.0k
0
votes
1
reply
1.4k
views
Regarding CDF & annotation package
Microarray Annotation affylmGUI Microarray Annotation affylmGUI
updated 12.1 years ago by ★ 4.1k • written 12.1 years ago by ▴ 10
0
votes
1
reply
1.3k
views
(microarray) - affylmGUI error when reading Affymetrix U133A and U133B .CEL file
Microarray PROcess affylmGUI Microarray PROcess affylmGUI
updated 12.2 years ago by 67k • written 12.2 years ago by ▴ 30
0
votes
8
replies
1.9k
views
affylmGUI/biocReposList() Problem
affylmGUI affylmGUI
updated 12.4 years ago by 67k • written 12.4 years ago by ▴ 30
0
votes
0
replies
1.1k
views
problems with oneChannelGUI
affylmGUI oneChannelGUI ASSIGN affylmGUI oneChannelGUI ASSIGN
12.7 years ago Manuela Di Russo ▴ 70
0
votes
2
replies
2.0k
views
Tktable 2.9 makefile problem
GO affylmGUI GO affylmGUI
updated 12.7 years ago by 25k • written 12.7 years ago by ▴ 10
0
votes
4
replies
2.6k
views
tcltk package for R 2.14.1
affylmGUI BiocInstaller affylmGUI BiocInstaller
updated 12.9 years ago by ★ 8.2k • written 12.9 years ago by ▴ 70
0
votes
0
replies
1.2k
views
TopTable function in affylmGUI does not have Gene names
affylmGUI affylmGUI
13.0 years ago Guest User ★ 13k
0
votes
2
replies
1.2k
views
affylmGUI annotations
Annotation annotate affylmGUI Annotation annotate affylmGUI
updated 13.3 years ago by ★ 2.0k • written 13.3 years ago by ▴ 30
0
votes
0
replies
1.1k
views
Issues running affylmGUI
Cancer Breast affylmGUI Cancer Breast affylmGUI
14.0 years ago Lorenzo Melchor ▴ 50
0
votes
0
replies
963
views
[R] Problems in running affylmGUI
Cancer Breast affylmGUI Cancer Breast affylmGUI
14.0 years ago James W. MacDonald 67k
0
votes
8
replies
2.1k
views
oneChannelGUI
Rgraphviz affylmGUI oneChannelGUI Rgraphviz affylmGUI oneChannelGUI
updated 14.0 years ago by ▴ 500 • written 14.0 years ago by ▴ 200
0
votes
0
replies
1.1k
views
Different result from gcrma function by using command line gcrma, affylmGUI and oneChannelGUI.
gcrma affylmGUI oneChannelGUI gcrma affylmGUI oneChannelGUI
14.3 years ago Lin Ying ▴ 10
0
votes
1
reply
1.1k
views
Difficulty installing oneChannelGUI in Vista
Cancer affylmGUI oneChannelGUI Cancer affylmGUI oneChannelGUI
updated 14.5 years ago by 67k • written 14.5 years ago by ★ 2.0k
0
votes
1
reply
999
views
Unique CDF File
cdf affylmGUI cdf affylmGUI
updated 14.6 years ago by ★ 6.5k • written 14.6 years ago by ▴ 10
0
votes
0
replies
975
views
affylmGUI MA-plot using Gene Symbols
Microarray Annotation hgu133plus2 probe affy affylmGUI Microarray Annotation hgu133plus2
14.9 years ago Chuming Chen ▴ 140
0
votes
0
replies
961
views
Problems with Affylimma and AffylmGUI
cdf affylmGUI cdf affylmGUI
14.9 years ago Maxim ▴ 170
0
votes
0
replies
986
views
affylmGUI
affy affylmGUI affy affylmGUI
15.1 years ago A. de Lang ▴ 10
0
votes
0
replies
836
views
Expression values from gcRMA are different than before
gcrma affylmGUI gcrma affylmGUI
15.1 years ago Glyn Bradley ▴ 40
0
votes
0
replies
1.2k
views
Bioconductor does not provide Humane gene ST, annotation "hugene10stv1cdf" to work with affylmGUI?!
Annotation cdf affylmGUI Annotation cdf affylmGUI
15.2 years ago rcaloger ▴ 500
0
votes
2
replies
1.4k
views
Bioconductor does not provide Humane gene ST annotation "hugene10stv1cdf" to work with affylmGUI?!
Annotation cdf affylmGUI Annotation cdf affylmGUI
updated 15.2 years ago by ★ 7.2k • written 15.2 years ago by ▴ 10
0
votes
7
replies
2.0k
views
Missing GeneSymbol and Name information in TopTable
Annotation hgu133plus2 annaffy affylmGUI Annotation hgu133plus2 annaffy affylmGUI
updated 15.3 years ago by ★ 7.2k • written 15.3 years ago by ▴ 40
0
votes
1
reply
1.1k
views
Affy huGENE ST arrays
cdf affy affylmGUI cdf affy affylmGUI
updated 15.3 years ago by ★ 7.2k • written 15.3 years ago by ▴ 10
0
votes
2
replies
1.1k
views
R scripts from AffylmGUI
Microarray affylmGUI Microarray affylmGUI
updated 15.4 years ago by ▴ 450 • written 15.4 years ago by ▴ 200
0
votes
0
replies
942
views
analyze/import my normalized/summarized affy data in affylmGUI
cdf affylmGUI cdf affylmGUI
15.6 years ago shirley zhang ★ 1.0k
0
votes
4
replies
1.4k
views
Exon Array analysis
cdf affylmGUI cdf affylmGUI
updated 15.6 years ago by ▴ 500 • written 15.7 years ago by ▴ 10
0
votes
1
reply
876
views
Please add hugene10stv1.cdf
cdf limma affylmGUI cdf limma affylmGUI
updated 15.7 years ago by 67k • written 15.7 years ago by ▴ 10
0
votes
8
replies
1.7k
views
affylmGUI segfault on "pd.ragene.1.0.st.v1"
Normalization GO cdf affy affylmGUI Normalization GO cdf affy affylmGUI
updated 15.9 years ago by ★ 13k • written 15.9 years ago by ▴ 70
0
votes
18
replies
2.8k
views
LPE error caused by gcRMA [Error in var.M.adap[i] <- ifelse(!is.na(var.M.adap[i - 1]), mean(var.M.adap[i + : replacement has length zero]
Cancer gcrma LPE affylmGUI Cancer gcrma LPE affylmGUI
updated 16.1 years ago by ▴ 70 • written 16.1 years ago by ★ 13k
0
votes
6
replies
2.5k
views
Is anyone developing an extensible Galaxy-like interface for Bioconductor?
affylmGUI limmaGUI affylmGUI limmaGUI
updated 16.3 years ago by ▴ 10 • written 16.3 years ago by ▴ 50
0
votes
2
replies
1.6k
views
Is anyone developing an extensible Galaxy-like interface for Bioconductor?
affylmGUI limmaGUI affylmGUI limmaGUI
updated 16.3 years ago by ▴ 90 • written 16.3 years ago by ▴ 140
0
votes
0
replies
1.1k
views
Is anyone developing an extensible Galaxy-like interface for Bioconductor?
Cancer affylmGUI limmaGUI Cancer affylmGUI limmaGUI
16.3 years ago Martin Morgan 25k
0
votes
0
replies
1.7k
views
Cutoff to use for IQR filtering in genefilter
genefilter affy limma GeneSpring affylmGUI GLAD SIM genefilter affy limma GeneSpring
16.4 years ago Mark Cowley ▴ 400
0
votes
3
replies
3.6k
views
Cutoff to use for IQR filtering in genefilter
affylmGUI affylmGUI
updated 16.4 years ago by ▴ 400 • written 16.4 years ago by ▴ 80
0
votes
1
reply
1.1k
views
how to import mas5 data into expresso (affy package)
Microarray limma PROcess affylmGUI Microarray limma PROcess affylmGUI
updated 16.5 years ago by 67k • written 16.5 years ago by ▴ 80
0
votes
1
reply
1.0k
views
default fdr rate in limma/affylmgui
affylmGUI affylmGUI
updated 16.6 years ago by 67k • written 16.6 years ago by ▴ 420
0
votes
0
replies
930
views
custom affylmGUI menus
Normalization vsn affylmGUI Normalization vsn affylmGUI
17.0 years ago Stefanie De Bodt ▴ 10
0
votes
3
replies
1.3k
views
R crashes after image array plots hgu133plus2 in R2.6.0
GUI hgu133plus2 affy limma affylmGUI GUI hgu133plus2 affy limma affylmGUI
updated 17.1 years ago by 25k • written 17.1 years ago by ★ 2.0k
0
votes
0
replies
834
views
affylmGUI: options for 'Export HTML Report'?
PROcess affylmGUI PROcess affylmGUI
17.2 years ago Keith Satterley ▴ 450
0
votes
1
reply
1.3k
views
An error of affylmGUI
cdf affy affylmGUI affyio cdf affy affylmGUI affyio
updated 17.3 years ago by ▴ 450 • written 17.3 years ago by ▴ 450
0
votes
0
replies
686
views
affylmGUI 1.10.4 fixes 3 errors in Bioconductor release version
affylmGUI affylmGUI
17.4 years ago Keith Satterley ▴ 450
0
votes
3
replies
1.5k
views
limma gene symbol not avialable problem
cdf affy affydata limma affylmGUI affyio cdf affy affydata limma affylmGUI affyio
updated 17.5 years ago by 67k • written 17.5 years ago by ▴ 450
0
votes
0
replies
852
views
affylmGUI ver 1.10.2 bug fix in release branch
affylmGUI affylmGUI
17.5 years ago Keith Satterley ▴ 450
0
votes
0
replies
2.9k
views
Tcl/TK package "Bwidget" when using limmaGUI or affylmGUI
limmaGUI affylmGUI
updated 3 months ago by 52k • written 17.6 years ago by ▴ 450
0
votes
5
replies
1.3k
views
CDF/Probe/Annotation for GNF1m custom chip
cdf probe affylmGUI cdf probe affylmGUI
updated 17.7 years ago by ★ 6.5k • written 17.7 years ago by ▴ 830
50 results • Page 1 of 1
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Comment: What type of counts data to import for performing Isoform analysis in edgeR by ATpoint ★ 4.5k
Probably nf-core did not run with bootstrap/gibbs replicates. Check the code. See salmon docs on how to turn that on.
Comment: What type of counts data to import for performing Isoform analysis in edgeR by mohammedtoufiq91 ▴ 10
@atpoint Thank you. I did wanted to try using the `quant.sf` files from the `salmon` run by referring edgeR user guide example `4.6 Differe…
Comment: athPkgBuilder data source :missing probesets by bobihanigujjar • 0
In this article, we'll explore the demand for unbranded BJJ Gis and the benefits of choosing unbranded Gis for customization. [does anyone …
Comment: Crossover design with limma by SamGG ▴ 360
IMHO, here are the missing annotations treatmentdrug_orderDrugPlac - treatmentplacebo_orderDrugPlac, # effect of drug for the Drug…
Answer: What type of counts data to import for performing Isoform analysis in edgeR by ATpoint ★ 4.5k
You don't need any of these files. You need the `catchSalmon` function which reads `quant.sf` and the inferential (Bootstrap/Gibbs) replica…
Votes
Comment: ANOVA like approach of edgeR
Comment: Crossover design with limma
Answer: DESeq2 normalization vs VST vs rlog
Comment: makeContrastsDream for Interaction
Answer: Limma- Print-tip loess normalisation-printer layout information does not match M
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