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bed
•
reset
4
votes
5
replies
5.5k
views
Convert an R data.frame to a bed file in R
rtracklayer
R
bed
updated 16 months ago by
Walters
• 0 • written 21 months ago by
L
▴ 50
9
votes
9
replies
5.4k
views
Importing a BED file with floating point scores?
rtracklayer
bed
updated 3.2 years ago by
merv
▴ 120 • written 8.1 years ago by
Ryan C. Thompson
★ 7.9k
1
vote
4
replies
2.6k
views
rtracklayer::import()-ing .bed.gz files from a URL
rtracklayer
import
bed
updated 8.1 years ago by
Michael Lawrence
★ 11k • written 8.1 years ago by
Peter Hickey
▴ 740
0
votes
2
replies
2.1k
views
Error reading vcf converted from bed file
readvcf
plink
file conversion
bed
bioc-devel
9.1 years ago
mjsduncan
• 0
3
votes
5
replies
1.7k
views
UcscTrack and BED without headers
gviz
BED
Ucsc
UcscTrack
8.3 years ago
Andy91
▴ 60
0
votes
1
reply
1.6k
views
Plot per-base-coverage output of a bed file of whole genome
coverage
bed
updated 6.7 years ago by
James W. MacDonald
65k • written 6.7 years ago by
sgupt46
• 0
0
votes
1
reply
1.5k
views
comparing 2 long BED files in R in an efficient way
bed
vcf
updated 5.9 years ago by
GENOMIC_region
• 0 • written 5.9 years ago by
Bogdan
▴ 670
2
votes
3
replies
1.4k
views
GRanges object from gene list
granges
bed
genomicranges
genomeintervals
deseq2
6.3 years ago
rbronste
▴ 60
1
vote
3
replies
1.4k
views
NAs values when importing BED file using import function
rtracklayer
NA
BED
getseq
8.5 years ago
Dimitris Polychronopoulos
▴ 80
5
votes
2
replies
1.2k
views
AnnotationHub: two broad peaks from same url are not the same
annotationhub
bugs
encode
bed
7.4 years ago
wcstcyx
▴ 30
0
votes
7
replies
1.2k
views
rtracklayer cannot export empty BED file
rtracklayer
bed
genomicranges
updated 5.5 years ago by
Michael Lawrence
★ 11k • written 5.5 years ago by
foehn
▴ 100
3
votes
4
replies
1.2k
views
Convert a bed file to bigBed with rtracklayer
bed
bigBed
rtracklayer
ucsc
18 months ago • updated 17 months ago
L
▴ 50
1
vote
2
replies
1.2k
views
Can rtracklayer import tab-delimited BED files with unquoted spaces in fields?
rtracklayer
bed
software error
updated 6.6 years ago by
Michael Lawrence
★ 11k • written 6.6 years ago by
Ryan C. Thompson
★ 7.9k
0
votes
3
replies
948
views
Error when using "readTranscriptFeatures" in "Genomation" R package for loading the bed file
readTranscriptFeatures
R
genomation
bed
updated 15 months ago by
James W. MacDonald
65k • written 16 months ago by
sat
• 0
0
votes
1
reply
899
views
Change the interval of bed file
mappability
bed
python
updated 2.3 years ago by
James W. MacDonald
65k • written 2.3 years ago by
the
• 0
0
votes
0
replies
790
views
Plotting bed8 with Sushi possible?
sushi
bed
5.6 years ago
maltethodberg
▴ 180
16 results • Page
1 of 1
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Replies
Comment: How to use bootRanges to bootstrap small RNA loci (nullranges package)
by
Michael Love
42k
> Any suggestions for methylation data segmentation? I think the same segmentation can be used.
Comment: deseq2 results
by
swbarnes2
★ 1.3k
Cross-posted https://www.biostars.org/p/9594331/#9594458
Answer: Mac ARM64 build report for BioC 3.19 from 'kjohnson3' reporting ERROR which it
by
Mike Smith
★ 6.5k
The other answers here are all good and demonstrate the issue with floating point comparisons nicely. I'd like to add that your particular…
Comment: More regions in union when increasing DBA$config$mergeOverlap
by
Ian D.
▴ 70
Nudging my question. I could do with confirmation before proceeding with my current projects. Thank you.
Comment: Extremely small p-values using Limma for proteomic data
by
Robert Castelo
★ 3.3k
From the point of view of visualization, I find handy the fact that raw p-values give more resolution than adjusted ones, which allows one …
Votes
A: Volcanoplot with limma - RAW P-values or Adj.P-Values
Answer: Mac ARM64 build report for BioC 3.19 from 'kjohnson3' reporting ERROR which it
Comment: Mac ARM64 build report for BioC 3.19 from 'kjohnson3' reporting ERROR which it
Answer: minfi latest update for EPIC V2 chip
A: Error in DESeqDataSet : some values in assay are not integers
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Michael Love
42k
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Haibo Liu
• 0
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▴ 10
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DevelopingHippo
• 0
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Robert Castelo
★ 3.3k
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