Showing : bioconductor • reset
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DESeq2 design and contrasts with 2 drug-treated and one control group
DESeq2 Bioconductor
4 days ago JT ▴ 10
2
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2
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188
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How to read OSCA book?
BIOCON OSCA Bioconductor
6 days ago • updated 3 days ago zr • 0
1
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2
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197
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WARNING: No Bioconductor dependencies detected.
Bioconductor Biocon
10 days ago • updated 8 days ago katja.danielzik • 0
0
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2
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281
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concentration tables suitable as input for new packages?
Bioconductor
11 days ago • updated 10 days ago katja.danielzik • 0
2
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229
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News: Save the Date for EuroBioC2025 in Barcelona!
EuroBioC2025 Conference Bioconductor Community
11 days ago Maria Doyle ▴ 90
0
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4
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334
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ı cant install clusterprofiler on my Ubuntu 20.04.6 LTS
Bioconductor clusterProfiler
updated 10 days ago by 67k • written 12 days ago by • 0
0
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0
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205
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News: Announcing GBCC 2025: The first-ever joint conference between Bioconductor and Galaxy!
Conference Bioconductor Community
17 days ago Maria Doyle ▴ 90
0
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1
reply
223
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Unable to install/use limma
limma Bioconductor
updated 17 days ago by 67k • written 17 days ago by • 0
1
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2
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282
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Review process for delivering R packages
Bioconductor
22 days ago XFWu • 0
0
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1
reply
236
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News: BioCAsia 2024 Registration Now Open!
BioCAsia2024 Conference Community Bioconductor
24 days ago • updated 23 days ago Maria Doyle ▴ 90
1
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3
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426
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Non-zero exit status error when installing GenomeInfoDbData
DECIPHER GenomeInfoDbData Bioconductor GenomeInfoDb
written 28 days ago by • 0
0
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0
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241
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Job: PhD position: Analysis of epistatic interactions in enzymes using long-read sequencing data
NGS AI Bioconductor
updated 25 days ago by ▴ 10 • written 29 days ago by ▴ 180
0
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0
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177
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BioCAsia 2024 Abstract Deadline - August 26th
BioCAsia2024 Community Conference Bioconductor
29 days ago Maria Doyle ▴ 90
0
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0
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201
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News: EuroBioC Updates: Important Deadlines
Conference EuroBioC2024 Bioconductor Community EuroBioC
5 weeks ago Maria Doyle ▴ 90
2
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4
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351
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Bioconductor Submission question
Bioconductor
5 weeks ago XFWu • 0
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161
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News: Annual Nominations Open for CAB and TAB! Deadline Aug 31
TAB CAB Bioconductor
6 weeks ago shepherl 4.0k
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179
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EuroBioC2024 Flashtalks & Birds-of-a-Feather Sessions - submissions open!
Community Conference Bioconductor EuroBioC2024
6 weeks ago Maria Doyle ▴ 90
1
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403
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News: Bioconductor Package Download Rate Limitation (HTTP 429)
downloads http429 http Bioconductor
8 weeks ago shepherl 4.0k
0
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4
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556
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featureCounts error: Assertion `numOfBuckets > 0' failed
featureCounts Subread Bioconductor
9 weeks ago • updated 6 weeks ago Jessica • 0
0
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2
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313
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Installing Bioconductor
Bioconductor
updated 9 weeks ago by ▴ 750 • written 10 weeks ago by • 0
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211
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News: EuroBioC2024 Carpentries workshops Sep 2-3
Community Workshop Bioconductor EuroBioC2024
10 weeks ago Maria Doyle ▴ 90
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194
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News: BioC2024 in-person registration closes soon (July 10)
BioC2024 Conference Bioconductor Community
11 weeks ago Maria Doyle ▴ 90
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0
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208
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Difference in Predictive component of PLS and OPLS Model
Metabolomics plotGrouper Bioconductor ropls PLSDAbatch
11 weeks ago devarti.mahakalkar • 0
0
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3
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366
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How to search Pubmed Central or other fulltext literature base using regex?
metaMSdata Bioconductor
11 weeks ago Abiologist • 0
0
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1
reply
252
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BiomaRt listAttributes - which are external ?
Bioconductor getBM
updated 12 weeks ago by 67k • written 12 weeks ago by • 0
4
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2
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431
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Behaviour of featureCounts when quantifying multi-mapping reads
Bioconductor featurecounts subread
3 months ago Rachael • 0
1
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5
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662
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Issues with installing Bioconductor packages (eg GEOquery)
GEOquery Bioconductor
updated 3 months ago by ★ 4.4k • written 3 months ago by • 0
0
votes
1
reply
240
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How to access the Bioconductor in Windows
Bioconductor
updated 3 months ago by ★ 4.4k • written 3 months ago by • 0
0
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0
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201
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EuroBioC2024 Registration is Open!
Community Conference Bioconductor EuroBioC2024
3 months ago Maria Doyle ▴ 90
0
votes
3
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848
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ChAMP not available for bioconductor 3.19
Bioconductor ChAMP
updated 3 months ago by 4.0k • written 3 months ago by • 0
0
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202
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News: Legacy Bioconductor Installation
Installation Bioconductor
3 months ago shepherl 4.0k
0
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0
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211
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News: Online course: Network Analysis in Systems Biology with R/Bioconductor
SystemsBiology Bioconductor Network
3 months ago info ▴ 10
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219
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News: Bioconductor Build System
Builds Bioconductor
4 months ago shepherl 4.0k
0
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241
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News: BioC2024 Bioconductor Carpentries RNA-Seq Workshop July 22-23
BioC2024 Conference Bioconductor Community
4 months ago Maria Doyle ▴ 90
0
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1
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295
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Problem in execuation of filterAndTrim command in DADA2
Bioconductor dada2
4 months ago • updated 11 weeks ago abhisek001 • 0
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6
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831
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Running ENmix with mouse methylation manifest: readidat error - Error in readmanifest(manifestfile) : length(control.line) == 1 && is.integer(cont…
ENmix Bioconductor
updated 3 months ago by • 0 • written 4 months ago by ▴ 10
3
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5
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736
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Error while installing BiocManager::install("org.Vdahliae.eg.db")
org.vdahlaie.eg.db Bioconductor
4 months ago Patadù ▴ 20
0
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1
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236
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Recovering my account credentials on Bioconductor
Bioconductor
updated 4 months ago by 4.0k • written 4 months ago by • 0
4
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507
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News: Bioconductor 3.19 is Released!
Release Bioconductor Packages Software
4 months ago shepherl 4.0k
0
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0
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248
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News: BioC2024 deadlines approaching
BioC2024 Bioconductor Community
4 months ago Maria Doyle ▴ 90
1
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1.8k
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Tutorial: Installing/switching between versions of R/Rstudio/Bioconductor on personal machine (Linux | Ubuntu)
bioconductor Install
5 months ago BioinfGuru ▴ 70
0
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277
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News: Important Release 3.18 Freeze Announcment
Release release Bioconductor Bioconducto
5 months ago shepherl 4.0k
0
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7
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891
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Internet connection for Bioconductor packages in Rstudio in Iran...
No_internet_connection_Packages Proxy Bioconductor GEOquery Internet_connection_problem
5 months ago needNGS • 0
2
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4
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bioconductor emailing list
Bioconductor
5 months ago • updated 5 weeks ago XFWu • 0
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329
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News: Deadline Extended - BioC2024 Abstracts and Sticker Contest - April 1st!
BioC2024 Conference Bioconductor
6 months ago Maria Doyle ▴ 90
1
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533
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News: Last Call: Nominations for Bioconductor Awards 2024! Deadline May 15
Recognition Awards Bioconductor Bioc204
6 months ago • updated 4 months ago shepherl 4.0k
1
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442
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supportedOrganisms() in goseq producing Error in names(trackIds)
goseq Bioconductor rtracklayer
6 months ago thomas • 0
0
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402
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News: BioC2024 registration is now open!
BioC2024 Conference Bioconductor Community
6 months ago Maria Doyle ▴ 90
1
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0
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438
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News: Nominations for Bioconductor Awards 2024!
Recognition Awards Bioconductor Bioc2024
7 months ago • updated 6 months ago shepherl 4.0k
0
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2
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614
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News: BioC2024 abstract submission is open!
BioC2024 Conference Bioconductor
written 7 months ago by ▴ 90
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Comment: Question on performing ANOVA-like analysis using limma by Gordon Smyth 51k
What does `sampleid` represent? If you use duplicateCorrelation(), then the blocking factor should be subject, it isn't clear from your que…
Answer: Question on performing ANOVA-like analysis using limma by Gordon Smyth 51k
In time course experiments such as this, it is essential to account for baseline variability between subjects, so the second analysis given…
Comment: AffylmGUI does not start wit R 4.4.1 by Gordon Smyth 51k
Glad to hear that you have figured it out. Your experience might help other people with limmaGUI or affylmGUI on MacOS as well.
Answer: rtracklayer accessing UCSC data table not working by James W. MacDonald 67k
The track argument is deprecated now, so you can omit it. ``` > tbl.rmsk <- getTable(ucscTableQuery(mySession, table = "rmsk", range = …
Answer: For feline genome by James W. MacDonald 67k
This support site is meant to help people with specific questions about using Bioconductor software. There is a [vignette for `ROntoTools`]…
Votes
Comment: AffylmGUI does not start wit R 4.4.1
DESeq2 testing ratio of ratios (RIP-Seq, CLIP-Seq, ribosomal profiling)
DESeq2 testing ratio of ratios (RIP-Seq, CLIP-Seq, ribosomal profiling)
Comment: Error in GOmeth function of missMethyl when EPICv2 annotation is used
Answer: unable to access Annotationhub latest record
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