Showing : camera • reset
3
votes
4
replies
264
views
Method to find pathways different between 2 groups
fgsea GSVA CAMERA
updated 7 days ago by 50k • written 8 days ago by ▴ 10
3
votes
4
replies
254
views
Help with error using camera() in limma
CAMERA limma
14 days ago Chris ▴ 10
1
vote
3
replies
373
views
CAMERA + Gene Ontology Gene Sets
GO limma CAMERA
updated 3 months ago by 50k • written 3 months ago by ▴ 10
1
vote
3
replies
660
views
Can CAMERA analyze just one particular pathway
pathway ORA limma CAMERA DGE
updated 8 months ago by 50k • written 9 months ago by • 0
0
votes
3
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625
views
Battery gene sets for CAMERA limma
CAMERA
updated 14 months ago by 65k • written 14 months ago by • 0
2
votes
2
replies
812
views
how to make a group to apply the data to CAMERA
CAMERA
24 months ago Akira • 0
4
votes
9
replies
1.8k
views
HELP! Troubleshooting Installing EBImage Package
Install CAMERA insta PackageType
updated 3.5 years ago by ▴ 750 • written 3.5 years ago by • 0
0
votes
0
replies
631
views
Interpretation of mroast p-value results for gene set testing of specific molecular signatures using microarray data
mroast camera gene set testing
3.6 years ago svlachavas ▴ 830
4
votes
11
replies
2.0k
views
Dealing with duplicated genes in camera gene set testing
limma camera gene set testing ensembl
updated 4.4 years ago by ★ 3.3k • written 4.4 years ago by ▴ 10
0
votes
2
replies
1.5k
views
Removing redundancy in Reactome pathways after performing gene set analysis with camera
camera limma gene set analysis gene set enrichment
updated 5.5 years ago by 50k • written 5.5 years ago by • 0
10
votes
2
replies
2.9k
views
How barcode-plot enrichment is calculated?
limma barcodeplot camera
updated 5.6 years ago by 50k • written 5.6 years ago by • 0
7
votes
2
replies
1.4k
views
Pre-ranked camera gene set testing with edgeR results
limma camera cameraPR edgeR gene set testing
updated 5.7 years ago by 50k • written 5.7 years ago by ▴ 60
0
votes
0
replies
1.1k
views
CAMERA error - isotopeProportionFits
camera metabolomics
6.3 years ago bhgyu ▴ 30
1
vote
2
replies
1.5k
views
Package won't recognise raw data files
camera metabolomics r
6.5 years ago bhgyu ▴ 30
0
votes
1
reply
1.4k
views
limma: Camera() about the input data
limma camera
updated 6.6 years ago by 50k • written 6.6 years ago by • 0
3
votes
1
reply
1.2k
views
No gene hits in cameraPR - due to bug dropping statistic names?
limma camera
updated 6.7 years ago by 50k • written 6.7 years ago by ▴ 40
0
votes
1
reply
1.2k
views
LIMMA Camera missing IDs.
limma camera
updated 6.8 years ago by 50k • written 6.8 years ago by • 0
0
votes
6
replies
1.8k
views
Different results obtained from mroast and camera from Deseq2 counts
limma camera mroast tximport
updated 6.9 years ago by 65k • written 6.9 years ago by ▴ 40
1
vote
0
replies
1.1k
views
Meta Analysis on CAMERA results
limma camera cohen d meta analysis
7.2 years ago Andy91 ▴ 60
0
votes
7
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2.4k
views
Camera gene set interpretation
limma camera gene set analysis gene set enrichment
updated 7.2 years ago by 50k • written 7.3 years ago by • 0
3
votes
2
replies
1.2k
views
how to deal with technical replicates in limma camera
limma camera
updated 7.5 years ago by 50k • written 7.5 years ago by ▴ 20
0
votes
2
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1.5k
views
using camera/roast/romer to find enriched gene sets from proteomics data
limma proteomics camera mroast romer
updated 7.6 years ago by 50k • written 7.6 years ago by • 0
0
votes
3
replies
1.9k
views
limma camera function Multiple contrasts
limma microarray contrast camera
updated 7.6 years ago by 50k • written 7.6 years ago by ▴ 20
1
vote
3
replies
1.9k
views
Is it possible to visualise the content of a xcmsSet object / the output of peak picking ?
metaMS xcmx CAMERA
updated 7.7 years ago by ▴ 20 • written 7.7 years ago by • 0
3
votes
7
replies
1.7k
views
major camera change from limma 3.22 to 3.28?
limma camera
updated 7.7 years ago by 50k • written 7.7 years ago by ▴ 10
3
votes
4
replies
1.6k
views
Competitive gene set testing between two sets of genes
gene set testing camera edger
updated 7.9 years ago by 50k • written 7.9 years ago by ▴ 20
2
votes
4
replies
1.7k
views
Getting gene ID's from camera results
limma camera
updated 8.0 years ago by ▴ 150 • written 8.0 years ago by ▴ 110
1
vote
5
replies
2.1k
views
Confused by results from CAMERA gene set testing
limma camera gene set testing
8.1 years ago claire.n.levy ▴ 10
2
votes
4
replies
3.0k
views
Arguments for camera (gene set analysis)
camera GSEA
updated 8.2 years ago by ★ 13k • written 8.2 years ago by ▴ 10
3
votes
4
replies
1.9k
views
Random effects with limma's camera()
limma camera duplicatecorrelation
updated 8.3 years ago by 50k • written 8.3 years ago by ▴ 30
8
votes
4
replies
5.6k
views
Differences between edgeR's and limma+voom's implementation of camera/roast/romer
limma edger mroast romer camera
updated 8.3 years ago by ★ 13k • written 8.3 years ago by ▴ 180
4
votes
12
replies
2.4k
views
Limma Camera error
limma camera
8.6 years ago ea1402 ▴ 20
5
votes
2
replies
2.1k
views
Using limma::roast/camera/romer etc from DESeq2
deseq2 edger limma romer camera
updated 8.7 years ago by 50k • written 8.7 years ago by ▴ 150
10
votes
9
replies
6.5k
views
CAMERA error: $ operator not defined for this S4 class
software error CAMERA
updated 8.9 years ago by ▴ 20 • written 8.9 years ago by ▴ 60
8
votes
4
replies
1.7k
views
NaN results on some pathways in CAMERA
camera edger pathway analysis
updated 8.9 years ago by 50k • written 8.9 years ago by ★ 7.9k
0
votes
1
reply
2.6k
views
CAMERA limma package. Gene set analysis.
limma camera
updated 9.1 years ago by 50k • written 9.1 years ago by • 0
0
votes
2
replies
1.3k
views
Using camera on a filtered expression matrix
camera limma gene set analysis
updated 9.3 years ago by 50k • written 9.3 years ago by • 0
3
votes
4
replies
5.2k
views
Gene set analysis with CAMERA
limma gene set analysis camera
updated 9.1 years ago by 50k • written 9.6 years ago by • 0
0
votes
3
replies
1.4k
views
CAMERA on Mac OS X 10.9 (Mavericks)
CAMERA CAMERA
updated 9.8 years ago by ★ 13k • written 9.8 years ago by ★ 13k
0
votes
0
replies
2.0k
views
IdeogramTrack and bigWig file errors in Gviz
GO Network rtracklayer CAMERA Gviz GO Network rtracklayer CAMERA Gviz
10.1 years ago Robert Ivanek ▴ 730
0
votes
0
replies
1.1k
views
CAMERA output to Neutral Monoisotopic Mass
convert CAMERA convert CAMERA
10.4 years ago Charles Determan Jr ▴ 140
0
votes
0
replies
1.3k
views
enrichment packages that accept t-stat (or related stat) as input
Microarray limma Category CAMERA GSVA Microarray limma Category CAMERA GSVA
10.6 years ago Gordon Smyth 50k
0
votes
0
replies
1.2k
views
enrichment packages that accept t-stat (or related stat) as input
Microarray Proteomics limma Category CAMERA GSVA Microarray Proteomics limma Category
10.6 years ago Pekka Kohonen ▴ 190
0
votes
1
reply
1.5k
views
IdeogramTrack and bigWig file errors in Gviz
ChIPSeq GO Network rtracklayer CAMERA chipseq Gviz ChIPSeq GO Network rtracklayer Gviz
updated 10.6 years ago by ★ 11k • written 10.6 years ago by ▴ 40
0
votes
2
replies
1.9k
views
romer implementation in edgeR
limma edgeR CAMERA limma edgeR CAMERA
updated 10.9 years ago by 50k • written 10.9 years ago by ▴ 190
0
votes
1
reply
1.2k
views
romer implementation in edgeR
edgeR CAMERA edgeR CAMERA
updated 8.3 years ago by 50k • written 10.9 years ago by ▴ 110
0
votes
2
replies
1.4k
views
IdeogramTrack and bigWig file errors in Gviz
Network rtracklayer CAMERA Gviz Network rtracklayer CAMERA Gviz
11.0 years ago Michael Lawrence ★ 11k
0
votes
6
replies
1.9k
views
IdeogramTrack and bigWig file errors in Gviz
ChIPSeq GO rtracklayer CAMERA chipseq Gviz ChIPSeq GO rtracklayer CAMERA chipseq Gviz
updated 11.0 years ago by ▴ 730 • written 11.1 years ago by ★ 13k
0
votes
3
replies
2.2k
views
CAMERA for non-directional gene sets
GO limma CAMERA GO limma CAMERA
updated 11.7 years ago by ▴ 120 • written 11.7 years ago by ▴ 20
0
votes
0
replies
1.2k
views
CFP: 23rd IEEE International Symposium on Computer-Based Medical Systems 2010 (IEEE CBMS 2010)
Proteomics CAMERA Proteomics CAMERA
14.0 years ago Amandeep Sidhu ▴ 20
50 results • Page 1 of 1
Recent ...
Replies
Comment: How to approach time course RNAseq data? Seeing 80% DE genes in timepoint groups by Gordon Smyth 50k
The NG dispersion is almost zero for your data, meaning that there is almost no biological variation between the replicates. There are also…
Comment: Can I trust the differential expression analysis when the two groups overlap on by BioinfGuru ▴ 30
No worries, wish I could be more help. Plotly provide a [3-D plot][1] function that's pretty simple (the two you did are still 2-D plots, t…
Comment: Can I trust the differential expression analysis when the two groups overlap on by Michael Love 42k
If you manually compute PCA on VST data, what are the top 5 genes contributing to PC1? https://github.com/thelovelab/DESeq2/blob/devel/R/p…
Comment: Can I trust the differential expression analysis when the two groups overlap on by Eric Katagirya • 0
I created a DESeqDataSet object using DESeqDataSetFromMatrix function. I don't anticipate any mismatching or mixup of sampleIDs.
Answer: Assymetric MA plot with no overall trend by Michael Love 42k
> so many upregulated genes vs. downregulated, which I think is worrying Take a look at the plotCounts for a couple of the up-regulated …
Votes
Answer: Can log2cpm be used for proteomics data normalization?
Ensembl 112 has been released.
A: Diffbind results - non uniform width
A: Different logFC (log2foldchange) values for genes from limma-voom and other too
Answer: Error EPICv2 ChAMP
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