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[DEVELOPMENT] Trying to use development version of Bioconductor, needs R 3.6?...
developers
bioc-devel
5.4 years ago
Casper van Mourik
• 0
0
votes
2
replies
1.3k
views
Circular dependencies between data and software packages: how best to avoid
developers
bioc-devel
package development
circular dependencies
updated 5.6 years ago by
shepherl
3.8k • written 5.6 years ago by
Tim Triche
★ 4.2k
3
votes
1
reply
2.1k
views
News:
Latin American BioC Developers Workshop 2018
bioconductor
developers
bioc-devel
News
6.0 years ago
Alejandro Reyes
★ 1.9k
0
votes
1
reply
1.5k
views
GIT: Fetch package source from remote upstream
git
github
developers
updated 6.3 years ago by
nitesh.turaga
▴ 140 • written 6.3 years ago by
wirth
• 0
1
vote
3
replies
1.9k
views
Access to github repository- how does one know if their ssh public key was accepted
github
package updates
developers
package development
6.6 years ago
rtraborn
• 0
1
vote
1
reply
843
views
flowDensity got downgraded
flowDensity
developers
updated 6.8 years ago by
Martin Morgan
25k • written 6.8 years ago by
mmalek
• 0
3
votes
2
replies
1.1k
views
Changing lead developer for existing package
developers
bioc-devel
updated 7.1 years ago by
Martin Morgan
25k • written 7.1 years ago by
mlbendall
• 0
1
vote
2
replies
1.6k
views
GitHub Continuous Integration, unit-tests, vignettes: R Packaging
github
vignette
test
developers
updated 8.3 years ago by
Dan Tenenbaum
★ 8.2k • written 8.3 years ago by
anthonycolombo60
• 0
0
votes
1
reply
2.0k
views
Is there a way to change the name of R package that is already published on bioconductor?
r
developers
devel
updated 8.5 years ago by
Martin Morgan
25k • written 8.5 years ago by
MarcinKosiński
• 0
1
vote
3
replies
1.6k
views
Are there any bioconductor github mirrors for data packages?
software
bioc-devel
developers
R
updated 8.5 years ago by
Dan Tenenbaum
★ 8.2k • written 8.5 years ago by
MarcinKosiński
• 0
7
votes
5
replies
2.9k
views
News:
European Bioconductor Developers Meeting: Cambridge 7/8th December 2015
developers
conference
workshop
News
updated 8.5 years ago by
Laurent Gatto
1.6k • written 8.7 years ago by
Mark Dunning
★ 1.1k
3
votes
1
reply
1.2k
views
Reverse the effect of useDevel()
bioconductor
devel
developers
updated 8.9 years ago by
Martin Morgan
25k • written 8.9 years ago by
andrew.j.skelton73
▴ 370
5
votes
3
replies
1.6k
views
BiocCheck: REQUIRED: vignette sources in vignettes/ directory (for custom vignettebuilder)
package
bioconductor
bioc-devel
developers
9.0 years ago
flying-sheep
▴ 10
0
votes
0
replies
2.1k
views
News:
European Bioconductor Developers' Meeting 12th-13th January 2015, Heidelberg
developers
workshop
conference
meeting
News
9.6 years ago
Wolfgang Huber
★ 13k
14 results • Page
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Answer: More regions in union when increasing DBA$config$mergeOverlap
by
Rory Stark
★ 5.2k
I think the documentation is out of sync with the code. Positive values represent gaps between intervals and negative values represent how …
Comment: log2FoldChange value is way too different when compared with counts(dds)
by
Michael Love
41k
But just to be clear, this is not the same as regressing out batch from the VST (approx log transformed): ``` limma::removeBatchEffect(cou…
Comment: log2FoldChange value is way too different when compared with counts(dds)
by
HAK
• 0
Thank you for the explanation, probably my brain just needed to accumulate enough info to understand what you are saying, but I finally got…
Answer: Getting Error in hclust(d, method = method): NA/NaN/Inf in foreign function call
by
ATpoint
★ 4.1k
Here the error probably means that you habe genes where expression scross all samples is the same. Rowscaling is value minus mean divided b…
Comment: Store output of matchPWM()
by
James W. MacDonald
65k
Here's a self contained reproducible example, using part of the example in `?matchPWM` ``` > library(Biostrings) > data(HNF4alpha) > libr…
Votes
Answer: DEseq2 coefficient
SPIA plotP giving error
Answer: Fold change calculation in Diffbind vs. DESEQ2?
C: How to establish a subset from TxDb.Hsapiens.UCSC.hg38.knownGene DB
C: Extremely big genes in annotation TxDb packages
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