Showing : enrichment • reset
5
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4
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GSVA ssGSEA vs. Broad implementation of ssGSEA
enrichment GSVA ssGSEA
updated 15 months ago by ▴ 10 • written 16 months ago by ▴ 30
0
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0
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900
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topGO: how do I retrieve my genes contributing to the GO term enrichment
gene enrichment topGO GO retrieve
2.8 years ago Priya • 0
0
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4
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2.3k
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Questions about non-model organisms gene enrichment analysis
non-model enrichment organisms analysis
updated 3.2 years ago by ★ 4.1k • written 3.4 years ago by • 0
0
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0
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881
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Enrichment in genomic regions
Enrichment clusterPro WGCNA
3.6 years ago María José • 0
0
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2
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1.5k
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Seeking help in multifactor differential gene expression analysis using DESeq2. Can not get significance difference while comparing 3 time factor (…
DifferentialExpression GeneExpression R enrichment DEGseq
updated 3.6 years ago by ★ 1.4k • written 3.6 years ago by • 0
1
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3
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3.4k
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enrichKEGG results for non-model organism
clusterProfiler enrichment KEGG
updated 23 months ago by • 0 • written 3.7 years ago by • 0
1
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3
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11k
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GSVA and ssGSEA output differences
enrichment GSVA enrichplot ssGSEA
updated 3.8 years ago by ★ 3.4k • written 3.8 years ago by • 0
0
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0
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1.0k
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Over-enrichment of cytobands in INDUCE-Seq
enrichment INDUCE-Seq
4.3 years ago Mark Dunning ★ 1.1k
2
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2
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1.4k
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Hypergeometric (gene set enrichment) test using "Categories" package
enrichment hypergeometric Categories
4.7 years ago josmantorres ▴ 10
0
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7
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5.0k
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topGO: GO term enrichment analysis of differentially expressed genes (!) including fold-change (!)
foldchange topGO DifferentialExpression enrichment
updated 5.2 years ago by 53k • written 5.2 years ago by ▴ 20
4
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4
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2.2k
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Replicating GO website analysis with bioconductor packages (topGO?)
topGO Gene Ontology enrichment panther.db
updated 5.4 years ago by 53k • written 5.4 years ago by ▴ 120
1
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2
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15k
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Interpreting TSS Enrichment Score Summary
atacseq atacseqqc tss enrichment
updated 5.5 years ago by ★ 1.3k • written 5.5 years ago by • 0
0
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0
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1.3k
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reactomePA error input file
r reactomePA enrichment
updated 5.7 years ago by ★ 4.0k • written 5.7 years ago by ▴ 10
3
votes
3
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7.8k
views
Genelist input for ClusterProfiler
R ClusterProfiler Enrichment Pathway
updated 2.7 years ago by ★ 4.1k • written 5.8 years ago by • 0
5
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7
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3.9k
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Alternative tools to perform GO enrichment on DE genes
go de enrichment rnaseq goana
updated 5.8 years ago by 53k • written 5.8 years ago by ▴ 60
2
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1
reply
2.3k
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Multiple protein ids issue- which protein IDs should be selected for downstream analysis?
Proteomics enrichment Perseus
5.9 years ago harelarik ▴ 60
3
votes
3
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1.9k
views
Discrepancies between topGO output and input
go topGO gene ontology enrichment
updated 6.6 years ago by 68k • written 6.6 years ago by • 0
1
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1
reply
1.6k
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How to retreive topGO significant IDs of genes after enrichment test ?
topGO significant enrichment genes IDs
7.0 years ago David ROUX ▴ 20
2
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3
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1.6k
views
How to calculate overlap between transposable elements differentially expressed in one experiment, with those expressed in another set of samples?
gene expression enrichment RNA-seq DESeq2
updated 7.0 years ago by 43k • written 7.0 years ago by ▴ 40
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0
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1.3k
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how to: enrichment (over representation) analysis of GWAS/QTL data distributed over a genome with GOSEQ
goseq enrichment GWAS
7.5 years ago zhu • 0
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0
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1.7k
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Enrichment of GWAS SNPs in regulatory regions
genomicranges enrichment fisher
9.4 years ago enricoferrero ▴ 680
1
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2
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3.0k
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Bias correction for enrichment analysis of 450k methylation data => feed bias adjusted genes into IPA
goseq 450k enrichment
updated 11.0 years ago by ▴ 40 • written 11.0 years ago by ▴ 10
0
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0
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2.1k
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DOSE: an R/Bioconductor package for Disease Ontology Semantic and Enrichment analysis
enrichment genesetenrichment dose gosemsim
11.2 years ago Guangchuang Yu ★ 1.2k
23 results • Page 1 of 1
Recent ...
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Comment: Error message that there is no package called Biobase by DamionLedner99 • 0
thanks for sharing!!! https://cran.r-project.org/
Comment: msmsTests, inconsistent sign between lFC.Av and LogFC by Ben • 0
Continued here due to posting difficulties: Extract from the results table: ``` Inhibitor Vehicle lFC.Av LogFC ... F1 0.0 27…
Answer: DESeq2 for 16S rRNA Analysis by James W. MacDonald 68k
The Wald test is only meant for comparison of two groups at a time, so it depends on what you mean by 'analyze across multiple groups at a …
Comment: MetaDE.pvalue: Error in xj[i]: invalid subscript type 'list' by varying.mastodon.isyn • 0
Oh, that error! I remember wrestling with that one for hours when I was first learning Python. Turns out I was trying to use a list itself …
Comment: Confirm that OpenStats will not be archived (pryr dependency) by Marina • 0
Thank you!
Votes
Answer: What happens to genes with low dispersion during dispersion shrinkage in DESeq2
Comment: Are transformed values from rlog /vst log2 normalized counts?
Answer: Are transformed values from rlog /vst log2 normalized counts?
A: DESeq2 normalization vs VST vs rlog
Answer: How to directly decet the outlier samples (libraries) in EdgeR pipeline
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