Showing : genefilter • reset
10
votes
23
replies
13k
views
Macbook M1 install genefilter failed
DESeq2 m1 macbook genefilter
2.8 years ago • updated 18 months ago soda ▴ 80
9
votes
10
replies
2.1k
views
Any efficient workaround to identify highly variable genes in Affymetrix microarray expression data?
limma microarray genefilter deseq2
4.9 years ago Jurat Shahidin ▴ 80
7
votes
5
replies
2.0k
views
Adjusted P values
limma genefilter
updated 9.5 years ago by 50k • written 9.5 years ago by ▴ 10
6
votes
5
replies
14k
views
Installation of package DESeq2
deseq2 rcurl annotate genefilter geneplotter
updated 7.3 years ago by 25k • written 7.3 years ago by ▴ 10
6
votes
6
replies
1.9k
views
genefilter filtered out 60% of the original genes?
genefilter edgeR
updated 8.0 years ago by ▴ 180 • written 8.0 years ago by ▴ 20
4
votes
4
replies
2.2k
views
Suggestions for non-specific filtering criteria with limma
limma genefilter
updated 8.4 years ago by ★ 13k • written 8.4 years ago by ▴ 10
4
votes
1
reply
1.1k
views
Is it valid to use only genes of interest before eBayes step in limma?
limma genefilter
updated 7.8 years ago by ★ 28k • written 7.8 years ago by • 0
4
votes
4
replies
2.6k
views
DEXSeq and Independent filtering
dexseq deseq2 genefilter
updated 8.4 years ago by ★ 13k • written 8.5 years ago by ▴ 20
4
votes
4
replies
2.6k
views
Non-specific filtering methodogies for ExpressionSet in R/Bioconductor
genefilter R bioconductor differential gene expression
updated 9.3 years ago by 50k • written 9.3 years ago by ▴ 830
3
votes
5
replies
2.2k
views
Fail to install "AnnotationHub"
software error annotation genefilter pd.hta.2.0
updated 7.6 years ago by 25k • written 7.6 years ago by ▴ 20
2
votes
4
replies
1.7k
views
filter.log in nsFilter function (package genefilter) gives null value
genefilter
updated 9.6 years ago by 65k • written 9.6 years ago by ▴ 10
2
votes
2
replies
1.3k
views
I'm looking for a filtering method that it does't use genewise variances
genefilter liimma microarray
updated 8.4 years ago by ★ 13k • written 8.4 years ago by ▴ 20
2
votes
12
replies
2.4k
views
I want to order genes in GO groups
gene ontology genefilter
updated 8.6 years ago by ▴ 360 • written 8.6 years ago by ▴ 10
2
votes
7
replies
1.7k
views
why genefilter does not work for me ?
R microarray genefilter
9.2 years ago Nemo ▴ 80
2
votes
1
reply
1.5k
views
Filtering array data with nsFilter
genefilter nsFilter
updated 8.0 years ago by 50k • written 8.0 years ago by • 0
1
vote
1
reply
2.1k
views
Removing probes with low variance across samples (Infinium 450k)
probe genefilter probe genefilter
updated 12.2 years ago by ★ 4.2k • written 12.2 years ago by ▴ 400
1
vote
5
replies
1.1k
views
error when trying to apply the specific gene filter.
genefilter
6.8 years ago DataFanatic ▴ 10
1
vote
3
replies
613
views
DESeq: relaxing gene filtering thresholds increases mean-Sd correlation, but recovers many important genes
metaanalysis meanSd genefilter DESeq2
10 months ago Ndimensional ▴ 20
1
vote
4
replies
1.9k
views
cran check shows that genefilter is not available
genefilter
6.5 years ago • updated 6.4 years ago jinkaixiu ▴ 10
1
vote
4
replies
1.4k
views
Error in the package of "genefilter" "nsFilter"
genefilter
updated 7.6 years ago by 65k • written 7.6 years ago by ▴ 20
1
vote
3
replies
2.9k
views
DESeq2/genefilter compatibility with R 4.2.2
DESeq2 genefilter
18 months ago Morgane ▴ 10
1
vote
1
reply
668
views
Weight Array Quality before of after applying variance filtering?
limma arrays genefilter
updated 21 months ago by 65k • written 21 months ago by ▴ 40
1
vote
3
replies
9.0k
views
genefilter installation error
genefilter genefilter
updated 9.7 years ago by ▴ 150 • written 9.7 years ago by ▴ 10
1
vote
2
replies
1.3k
views
removal of probes called "Absent"
probe genefilter probe genefilter
updated 13.8 years ago by ▴ 930 • written 13.8 years ago by ▴ 100
1
vote
1
reply
2.0k
views
Rosetta Resolver-like error-weighted ANOVAs in Bioconductor
Microarray genefilter affy Microarray genefilter affy
updated 10.2 years ago by ★ 7.9k • written 10.2 years ago by ▴ 10
1
vote
1
reply
1.5k
views
Error using nsFilter() Error in (function (classes, fdef, mtable) unable to find an inherited method for function columns for signature function
genefilter
8.0 years ago Lucy • 0
1
vote
3
replies
1.5k
views
Selecting genes that best separate between two groups
limma genefilter ttest clustering TPM
6.6 years ago lirongrossmann ▴ 80
0
votes
0
replies
734
views
Failure to install genefilter, multtest and affy in RAqua on Mac OS X
genefilter multtest affy genefilter multtest affy
20.5 years ago Paul Dickinson ▴ 10
0
votes
4
replies
1.9k
views
installation problem
Ruuid genefilter rhdf5 multtest affy graph Rgraphviz RBGL Ruuid genefilter rhdf5 affy
updated 20.6 years ago by 6.7k • written 20.6 years ago by ▴ 30
0
votes
0
replies
1.2k
views
Bioconductor 1.0
Microarray Annotation Normalization Cancer genefilter geneplotter multtest ROC Microarray
22.0 years ago Anthony Rossini ▴ 530
0
votes
1
reply
1.0k
views
Biobase load failed
Biobase genefilter tkWidgets Biobase genefilter tkWidgets
updated 20.6 years ago by 6.7k • written 20.6 years ago by ▴ 10
0
votes
2
replies
1.5k
views
Advice for analyzing Affy data
Cancer genefilter Cancer genefilter
updated 20.7 years ago by 65k • written 20.7 years ago by ▴ 180
0
votes
0
replies
1.5k
views
peer review process/DATE CORRECTION
Biobase annotate edd genefilter geneplotter rhdf5 multtest ROC tkWidgets affy AnnBuilder
22.1 years ago Vincent J. Carey, Jr. 6.7k
0
votes
2
replies
1.2k
views
simpleaffy and yeast2cdf problems
Survival cdf genefilter affy simpleaffy Survival cdf genefilter affy simpleaffy
updated 17.3 years ago by ▴ 160 • written 17.3 years ago by ▴ 50
0
votes
3
replies
1.1k
views
Recent changes to Bioconductor packages
genefilter affy graph Rgraphviz limma annaffy genefilter affy graph Rgraphviz limma
20.7 years ago • updated 20.6 years ago madman@jimmy.harvard.edu ▴ 850
0
votes
0
replies
2.7k
views
Error: (subscript) logical subscript too long. Help, please?
Cancer genefilter Cancer genefilter
20.9 years ago Fátima Núñez ▴ 130
0
votes
0
replies
854
views
Error Installation for Genefilter
Biobase genefilter Biobase genefilter
20.9 years ago Lisa Devereaux ▴ 20
0
votes
3
replies
837
views
multtest dependencies
Survival genefilter multtest reposTools Survival genefilter multtest reposTools
19.1 years ago Francois Pepin ★ 1.3k
0
votes
1
reply
877
views
Golub example from Gentleman and Carey
Annotation annotate genefilter Annotation annotate genefilter
updated 20.9 years ago by 6.7k • written 20.9 years ago by ▴ 150
0
votes
5
replies
1.6k
views
Importing CDF file for custom array using makecdfenv
Microarray GO Survival Cancer cdf Biobase annotate genefilter affy graph makecdfenv GO
updated 17.5 years ago by ▴ 20 • written 17.5 years ago by ★ 2.2k
0
votes
3
replies
3.3k
views
Installing genefilter
Microarray genefilter multtest Microarray genefilter multtest
updated 19.2 years ago by ▴ 300 • written 19.2 years ago by ▴ 20
0
votes
7
replies
1.1k
views
Gene filtering
genefilter genefilter
updated 19.2 years ago by ★ 1.8k • written 19.2 years ago by ▴ 310
0
votes
5
replies
1.3k
views
data() function problem
genefilter genefilter
21.0 years ago ZRG Zeren Gao ▴ 30
0
votes
3
replies
1.2k
views
Install of 1.5 Packages fails
GO edd genefilter annaffy affyPLM marray GO edd genefilter annaffy affyPLM marray
updated 19.5 years ago by ★ 5.5k • written 19.5 years ago by ★ 1.7k
0
votes
2
replies
1.3k
views
gregmisc package-problems with BioC latest release?
Biobase annotate edd genefilter geneplotter ROC limma siggenes affyPLM marray Biobase
updated 19.5 years ago by ★ 7.4k • written 19.5 years ago by ▴ 130
0
votes
2
replies
892
views
error in installing Bioconductor development packages
Biobase annotate genefilter reposTools affy Biobase annotate genefilter reposTools affy
updated 19.2 years ago by ★ 7.4k • written 19.2 years ago by ▴ 10
0
votes
2
replies
1.2k
views
Problems encountered using affy in R
Biobase annotate genefilter multtest ROC tkWidgets affy vsn Biobase annotate genefilter
updated 21.2 years ago by 6.7k • written 21.2 years ago by ▴ 20
0
votes
0
replies
860
views
question about multtest v.1.5.2
Survival genefilter multtest reposTools Survival genefilter multtest reposTools
19.1 years ago ivan.borozan@utoronto.ca ▴ 80
0
votes
2
replies
922
views
How to filter genes according to the intensities of both channels for cDNA array?
Normalization probe genefilter Normalization probe genefilter
updated 19.0 years ago by 21k • written 19.0 years ago by ▴ 90
0
votes
1
reply
3.0k
views
2 way anova in Bioconductor
Microarray GO genefilter limma GeneSpring ABarray preprocessCore arrayQualityMetrics BRAIN
updated 12.8 years ago by ▴ 210 • written 12.8 years ago by ▴ 110
50 results • Page 1 of 1
Recent ...
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Answer: log2FoldChange value is way too different when compared with counts(dds) by Michael Love 41k
This has been asked before, but with a multi factor design, the LFC for coefficient X adjust for the others, in a way that is often hard to…
Answer: Get genomic coordinates of CpGs sites (chromosomes, genomic position) by James W. MacDonald 65k
You don't say what array that is, so I will guess. ``` > library(IlluminaHumanMethylationEPICanno.ilm10b4.hg19) > Locations DataFrame…
Answer: SGSeq: moving toward diffex from SGSeq analysis by Leonard Goldstein ▴ 200
`vid` and `eid` are unique identifiers for splice variants and splicing events respectively. They are analogous to exon bin and gene identi…
Comment: Help with error using camera() in limma by Chris • 0
Thanks James! I fixed the error. I try gene symbol instead of entrez and it worked.
Comment: limma for gene expression analysis with big and unbalanced sample size by XW • 0
Could you explain more about the comment "there are no problems with using limma for unbalanced data sets" ? thanks.
Votes
SPIA plotP giving error
Answer: Fold change calculation in Diffbind vs. DESEQ2?
C: How to establish a subset from TxDb.Hsapiens.UCSC.hg38.knownGene DB
C: Extremely big genes in annotation TxDb packages
Make custom Txdb class objects from Txdb
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