Bioconductor Genome

Showing : genome • reset

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236

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ensembldb transcriptome genome coordinateconversion

updated 10 weeks ago by Michael Love 42k • written 11 weeks ago by saadmurtazakhan ▴ 10

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688

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build genome

15 months ago Dmitry • 0

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2.2k

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Genome bwamem ChIPSeqData index

updated 15 months ago by ATpoint ★ 4.2k • written 15 months ago by Maka • 0

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1.1k

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Alignment Genome

2.7 years ago • updated 2.6 years ago Charles Plessy ▴ 180

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1.3k

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Genome readVcf VariantAnnotation

3.3 years ago naive • 0

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1.1k

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Genome GWASdata

3.3 years ago Jocelyn • 0

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1.0k

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annotation genome hg38 TxDb.Hsapiens.UCSC.hg38.knownGene BSgenome.Hsapiens.UCSC.hg38

updated 4.3 years ago by kayla.interdonato ▴ 160 • written 4.3 years ago by jam526 • 0

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1.1k

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Gviz R UCSC Tracks genome locusplot

updated 4.7 years ago by Robert Ivanek ▴ 730 • written 4.7 years ago by s.koturan • 0

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947

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single cell bioinformatics genome sequencing Job

4.7 years ago jmaanaki • 0

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2.0k

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annotation gff3 gff genome

updated 4.8 years ago by Michael Lawrence ★ 11k • written 4.8 years ago by mictadlo ▴ 10

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2.7k

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txdb genome exons

updated 4.9 years ago by Martin Morgan 25k • written 4.9 years ago by Bogdan ▴ 670

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877

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single cell genome cancer Job

5.0 years ago jmaanaki • 0

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906

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genome novel package release

updated 5.4 years ago by James W. MacDonald 66k • written 5.4 years ago by pertille • 0

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1.2k

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multiplealignment genome

5.7 years ago Giuseppe ▴ 20

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1.3k

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r build genome chicken-sheme

8.6 years ago pertille • 0

15 results • Page 1 of 1

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Comment: Trouble reading samplesheet in with diffbind to create dba by Mallory • 0

Thank you for your reply! There mustve been something wierd going on with my peak formats as you pointed out. I recalled all the peaks and …

Answer: Trouble reading samplesheet in with diffbind to create dba by Anthony • 0

I was struggling with this today too. For me it happened because my peak files were not in the correct format. The "10 elements" refers to …

Comment: gds in GEOmetadb 2023-06-26 version is empty by Frederico Moraes Ferreira ▴ 100

Try axel -n 20 https://gbnci.cancer.gov/geo/GEOmetadb.sqlite.gz

Comment: Most enriched pathway is not expressed when modifying universe parameter by James W. MacDonald 66k

The default for `enrichGO` is to subset to those with a p-value<0.05. You don't adjust that default argument, so you shouldn't have any GO …

Answer: In a 3 group DEG analysis with three batches, can I use 1 group in all three bat by Michael Love 42k

You can compare A and C thanks to the sharing of samples from B across 1, 2 and 3.

Votes

Answer: How to do DESeq2 on Kallisto Data

Comment: Most enriched pathway is not expressed when modifying universe parameter

Time-course, comparison of two groups

Answer: Behaviour of featureCounts when quantifying multi-mapping reads

Answer: GESA with certain gene list returns no result with human genom, but many result

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